RLG00000026964

Protein of unknown function (DUF2985)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0019730
Physical Location & Seq
Forward (+)
7290513 .. 7291083
571 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026964

Sequence Viewer

Length: 393 bp
ATGGAGCAGAAAGCCATTGAAGATGCTTCATTTTCTGTGGTTCATCTGTGTTTATGGAGACCAGAAGATGCTTCAAAGCTTCGAAGGTTTTACTGCAAAATTGGGAAAGAGAGGCCGCATGAAAGGGCACACATGGTGGCCATTGTCATTCTGTTCCAAGTGACCTGTTTTTCACAATACATTGTTTGTGGTTTACACTGGGGTTACAGCATTTCCGAACGACCTTTCGAAGCAATTGGAATAAGTTTATTGATTACGATAAGTTCAGTTATAATTGCTGTTCTATACAAAACTTTCGGCCCCTTGCAAAAGGAGGATCCTAATTCCGGCGTGGATGTGGAAGCGCCTGGCTGCGAAGGCAACCTCCCCAGAACCCCAATTTTTAAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2985 PLAC8

Protein Analysis

131

Amino Acids

14.62

Weight (kDa)

6.89

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019730)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25460
rosa_chinensis RchiOBHm_Chr1g0371421
rosa_laevigata RLG00000026964
rosa_samantha Rh1AG374000 Rh1BG337400 Rh1CG350700 Rh1DG368400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 272
AciI CCGC 1 cut(s) 116
AclWI GGATC 2 cut(s) 311, 324
AcoI YGGCCR 1 cut(s) 138
AdeI CACNNNGTG 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 2 cut(s) 20, 75
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 2 cut(s) 311, 324
AoxI GGCC 4 cut(s) 113, 138, 298, 387
ApeKI GCWGC 1 cut(s) 351
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 299
AsuII TTCGAA 2 cut(s) 82, 228
BaeGI GKGCMC 1 cut(s) 130
BalI TGGCCA 1 cut(s) 140
BamHI GGATCC 1 cut(s) 316
BbvI GCAGC 1 cut(s) 338
BciT130I CCWGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 52
BfoI RGCGCY 1 cut(s) 347
BisI GCNGC 2 cut(s) 116, 352
BlsI GCNGC 2 cut(s) 117, 353
Bme1390I CCNGG 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 2 cut(s) 301, 318
BmrFI CCNGG 1 cut(s) 348
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 2 cut(s) 13, 58
BmuI ACTGGG 1 cut(s) 208
Bpu14I TTCGAA 2 cut(s) 82, 228
BsaI GGTCTC 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 348
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 326
BseNI ACTGG 1 cut(s) 203
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 1 cut(s) 338
BshFI GGCC 4 cut(s) 115, 140, 300, 389
BsiSI CCGG 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 52
BsnI GGCC 4 cut(s) 115, 140, 300, 389
Bso31I GGTCTC 1 cut(s) 52
Bsp119I TTCGAA 2 cut(s) 82, 228
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 316
BspACI CCGC 1 cut(s) 116
BspANI GGCC 4 cut(s) 115, 140, 300, 389
BspLI GGNNCC 2 cut(s) 301, 318
BspPI GGATC 2 cut(s) 311, 324
BspT104I TTCGAA 2 cut(s) 82, 228
BspTNI GGTCTC 1 cut(s) 52
BsrI ACTGG 1 cut(s) 203
BssMI GATC 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 348
BstBI TTCGAA 2 cut(s) 82, 228
BstF5I GGATG 1 cut(s) 340
BstH2I RGCGCY 1 cut(s) 347
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 346
BstSLI GKGCMC 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BsuRI GGCC 4 cut(s) 115, 140, 300, 389
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 196
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 299
CviAII CATG 2 cut(s) 119, 133
CviJI RGCY 7 cut(s) 14, 79, 115, 140, 300, 351, 389
CviKI_1 RGCY 7 cut(s) 14, 79, 115, 140, 300, 351, 389
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
DraIII CACNNNGTG 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 138
Eco147I AGGCCT 1 cut(s) 389
Eco31I GGTCTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 346
FaeI CATG 2 cut(s) 122, 136
FaiI YATR 5 cut(s) 55, 120, 134, 272, 286
FatI CATG 2 cut(s) 118, 132
Fnu4HI GCNGC 2 cut(s) 116, 352
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 2 cut(s) 116, 352
GlaI GCGC 1 cut(s) 345
GluI GCNGC 2 cut(s) 116, 352
HaeII RGCGCY 1 cut(s) 347
HaeIII GGCC 4 cut(s) 115, 140, 300, 389
HapII CCGG 1 cut(s) 327
HhaI GCGC 1 cut(s) 346
Hin1II CATG 2 cut(s) 122, 136
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HindIII AAGCTT 1 cut(s) 77
HpaII CCGG 1 cut(s) 327
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 194
HpyAV CCTTC 2 cut(s) 78, 350
HpyCH4V TGCA 2 cut(s) 96, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
Hsp92II CATG 2 cut(s) 122, 136
HspAI GCGC 1 cut(s) 344
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 7 cut(s) 75, 178, 184, 333, 340, 360, 382
Lsp1109I GCAGC 1 cut(s) 338
LweI GCATC 2 cut(s) 13, 58
MaeIII GTNAC 2 cut(s) 160, 203
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 2 cut(s) 32, 77
MfeI CAATTG 1 cut(s) 234
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 5 cut(s) 99, 234, 273, 322, 378
MluNI TGGCCA 1 cut(s) 140
MnlI CCTC 3 cut(s) 105, 307, 374
Mox20I TGGCCA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 140
MseI TTAA 1 cut(s) 384
Msp20I TGGCCA 1 cut(s) 140
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 1 cut(s) 348
MunI CAATTG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 348
MwoI GCNNNNNNNGC 1 cut(s) 357
NdeII GATC 1 cut(s) 316
NlaIII CATG 2 cut(s) 122, 136
NlaIV GGNNCC 2 cut(s) 301, 318
NmuCI GTSAC 1 cut(s) 160
NspV TTCGAA 2 cut(s) 82, 228
PceI AGGCCT 1 cut(s) 389
PkrI GCNGC 2 cut(s) 117, 353
PsiI TTATAA 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 2 cut(s) 301, 318
PspPI GGNCC 1 cut(s) 299
PsuI RGATCY 1 cut(s) 316
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 2 cut(s) 116, 352
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 1 cut(s) 130
SetI ASST 5 cut(s) 81, 89, 167, 226, 366
SfaNI GCATC 2 cut(s) 13, 58
SfuI TTCGAA 2 cut(s) 82, 228
Sse9I AATT 5 cut(s) 99, 234, 273, 322, 378
SseBI AGGCCT 1 cut(s) 389
SsiI CCGC 1 cut(s) 116
StuI AGGCCT 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 346
TaqI TCGA 2 cut(s) 82, 228
TasI AATT 5 cut(s) 99, 234, 273, 322, 378
TauI GCSGC 1 cut(s) 118
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 1 cut(s) 203
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 351
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 3 cut(s) 18, 32, 135
TspRI CASTG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.