FvH4_7g29460

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017719
Physical Location & Seq
Forward (+)
21663065 .. 21664046
982 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29460.t1

Sequence Viewer

Length: 633 bp
ATGCAAGAGAATGAAGTTCCCGGGAGGAGGAGACGCGCCACTTTGATCAAGAAAGCAAAAGAATTATCTATTCTATGTGATGCAGAGGTCGCAGTCATCGCTTTCACAAGTGATGGAAAGCTTCACGAGTACTCTACCAATAGTGTGGAGCACACACTTTCAAGATACCAGAACTATAAGAGCGGCCTCGTCCGCGCAACCAAGATGGAATCTGATGCGCCAGAGGAGTGCCGCCGCGAAGCTGTTTCAAACGAGGAAGTCCAAAAATCAAGTGACGAAGTTCTGCATGCACTCAAGGGACAACATGCAGCGCTGGAATTAGACAAGCTACGGAGAGAGGGAAAGGCTTTGGATGGGTTGAGTAGGGAAGAGCTGTGTGCCCTAGAGATAGAGCAACACCGGGCGTTAGAATCTGTCTTGAAAAAGAAGGAGGAACTACTTGTGCGGTTGGTGCATAAGTCTAATAAGGAGCGTGATCGACATCAAGCAATTCAGGAGAGGACGAGAGAAATACCTTATCTCCAACTGTTCCCGGAGAACAGTACGGGTTTCTCCACGAGCTCGAAAGCTGTTTCACTTTCAAATTGTCCAACACAGGATATGGACATTGATCTTTTGCGCCTTAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

211

Amino Acids

23.98

Weight (kDa)

6.68

Isoelectric Point (pI)

53.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 44 6.6e-15 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017719)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29460
rosa_chinensis RchiOBHm_Chr5g0045241
rosa_laevigata RLG00000034347
rosa_multiflora Rmu_sc0001773.1_g000020 Rmu_sc0007992.1_g000003
rosa_roxburghii Rroxscaffold_1G00035810
rosa_rugosa Rorug05G0222100
rosa_samantha Rh5BG311700 Rh5CG337800 Rh5DG321800
rosa_wichuraiana Rw5G028140 Rw5G028450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 183
AccII CGCG 3 cut(s) 36, 195, 237
AciI CCGC 5 cut(s) 183, 193, 232, 235, 445
AfaI GTAC 2 cut(s) 131, 544
AfeI AGCGCT 1 cut(s) 312
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 4 cut(s) 162, 249, 421, 582
AluBI AGCT 6 cut(s) 121, 242, 328, 373, 561, 569
AluI AGCT 6 cut(s) 121, 242, 328, 373, 561, 569
Alw21I GWGCWC 2 cut(s) 153, 563
Alw26I GTCTC 1 cut(s) 25
Ama87I CYCGRG 1 cut(s) 20
Aor51HI AGCGCT 1 cut(s) 312
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 308
AspLEI GCGC 5 cut(s) 38, 197, 220, 313, 621
AsuC2I CCSGG 4 cut(s) 21, 22, 401, 533
AvaI CYCGRG 1 cut(s) 20
AxyI CCTNAGG 1 cut(s) 623
BaeGI GKGCMC 1 cut(s) 382
BanII GRGCYC 1 cut(s) 563
BauI CACGAG 2 cut(s) 125, 556
Bbv12I GWGCWC 2 cut(s) 153, 563
BbvI GCAGC 1 cut(s) 320
BccI CCATC 3 cut(s) 107, 199, 347
BclI TGATCA 1 cut(s) 45
BcnI CCSGG 4 cut(s) 21, 22, 401, 533
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 1 cut(s) 383
BfoI RGCGCY 1 cut(s) 314
BisI GCNGC 4 cut(s) 184, 232, 235, 309
BlsI GCNGC 4 cut(s) 185, 233, 236, 310
BmcAI AGTACT 1 cut(s) 131
Bme1390I CCNGG 4 cut(s) 21, 22, 401, 533
BmeT110I CYCGRG 1 cut(s) 20
BmrFI CCNGG 4 cut(s) 21, 22, 401, 533
BmsI GCATC 2 cut(s) 70, 205
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 4 cut(s) 21, 22, 401, 533
BsaBI GATNNNNATC 1 cut(s) 480
BsaJI CCNNGG 1 cut(s) 20
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse21I CCTNAGG 1 cut(s) 623
Bse8I GATNNNNATC 1 cut(s) 480
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 358
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 1 cut(s) 27
BseRI GAGGAG 3 cut(s) 40, 43, 239
BseSI GKGCMC 1 cut(s) 382
BseXI GCAGC 1 cut(s) 320
Bsh1236I CGCG 3 cut(s) 36, 195, 237
BshFI GGCC 1 cut(s) 186
BsiHKAI GWGCWC 2 cut(s) 153, 563
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 3 cut(s) 21, 400, 533
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 25
BsmBI CGTCTC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 312
BsnI GGCC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 20
Bsp1286I GDGCHC 3 cut(s) 153, 382, 563
Bsp143I GATC 3 cut(s) 45, 475, 610
BspACI CCGC 5 cut(s) 183, 193, 232, 235, 445
BspANI GGCC 1 cut(s) 186
BspFNI CGCG 3 cut(s) 36, 195, 237
BspQI GCTCTTC 1 cut(s) 363
BsrBI CCGCTC 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 3 cut(s) 45, 475, 610
BssSI CACGAG 2 cut(s) 125, 556
Bst2BI CACGAG 2 cut(s) 125, 556
Bst4CI ACNGT 2 cut(s) 528, 542
Bst6I CTCTTC 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 1 cut(s) 623
BstF5I GGATG 1 cut(s) 358
BstFNI CGCG 3 cut(s) 36, 195, 237
BstH2I RGCGCY 1 cut(s) 314
BstHHI GCGC 5 cut(s) 38, 197, 220, 313, 621
BstKTI GATC 3 cut(s) 48, 478, 613
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 3 cut(s) 45, 475, 610
BstMWI GCNNNNNNNGC 5 cut(s) 89, 98, 192, 451, 625
BstNSI RCATGY 2 cut(s) 290, 308
BstSCI CCNGG 4 cut(s) 19, 20, 399, 531
BstSLI GKGCMC 1 cut(s) 382
BstUI CGCG 3 cut(s) 36, 195, 237
BstV1I GCAGC 1 cut(s) 320
BstXI CCANNNNNNTGG 1 cut(s) 145
Bsu36I CCTNAGG 1 cut(s) 623
BsuRI GGCC 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 288
CfoI GCGC 5 cut(s) 38, 197, 220, 313, 621
Cfr9I CCCGGG 1 cut(s) 20
CseI GACGC 1 cut(s) 42
Csp6I GTAC 2 cut(s) 130, 543
CviAII CATG 2 cut(s) 287, 305
CviJI RGCY 9 cut(s) 121, 186, 242, 328, 347, 373, 561, 569, 628
CviKI_1 RGCY 9 cut(s) 121, 186, 242, 328, 347, 373, 561, 569, 628
CviQI GTAC 2 cut(s) 130, 543
DdeI CTNAG 1 cut(s) 623
DpnI GATC 3 cut(s) 47, 477, 612
DpnII GATC 3 cut(s) 45, 475, 610
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Ecl136II GAGCTC 1 cut(s) 561
Eco24I GRGCYC 1 cut(s) 563
Eco47III AGCGCT 1 cut(s) 312
Eco53kI GAGCTC 1 cut(s) 561
Eco81I CCTNAGG 1 cut(s) 623
Eco88I CYCGRG 1 cut(s) 20
EcoICRI GAGCTC 1 cut(s) 561
EcoT38I GRGCYC 1 cut(s) 563
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 2 cut(s) 290, 308
FaiI YATR 6 cut(s) 76, 177, 288, 306, 456, 602
FaqI GGGAC 1 cut(s) 312
FatI CATG 2 cut(s) 286, 304
FbaI TGATCA 1 cut(s) 45
Fnu4HI GCNGC 4 cut(s) 184, 232, 235, 309
FokI GGATG 1 cut(s) 365
FriOI GRGCYC 1 cut(s) 563
Fsp4HI GCNGC 4 cut(s) 184, 232, 235, 309
FspBI CTAG 1 cut(s) 383
GlaI GCGC 5 cut(s) 37, 196, 219, 312, 620
GluI GCNGC 4 cut(s) 184, 232, 235, 309
HaeII RGCGCY 1 cut(s) 314
HaeIII GGCC 1 cut(s) 186
HapII CCGG 3 cut(s) 21, 400, 533
HgaI GACGC 1 cut(s) 42
HhaI GCGC 5 cut(s) 38, 197, 220, 313, 621
Hin1II CATG 2 cut(s) 290, 308
Hin6I GCGC 5 cut(s) 36, 195, 218, 311, 619
HinP1I GCGC 5 cut(s) 36, 195, 218, 311, 619
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 2 cut(s) 209, 410
HpaII CCGG 3 cut(s) 21, 400, 533
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 5 cut(s) 49, 125, 162, 418, 494
HpyAV CCTTC 1 cut(s) 421
HpyCH4III ACNGT 2 cut(s) 528, 542
HpyCH4V TGCA 6 cut(s) 4, 83, 286, 290, 308, 454
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 98, 192, 451, 625
HpyF3I CTNAG 1 cut(s) 623
Hsp92II CATG 2 cut(s) 290, 308
HspAI GCGC 5 cut(s) 36, 195, 218, 311, 619
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 3 cut(s) 45, 475, 610
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 2 cut(s) 148, 469
LpnPI CCDG 8 cut(s) 34, 182, 234, 299, 413, 479, 546, 581
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 2 cut(s) 70, 205
MaeI CTAG 1 cut(s) 383
MaeIII GTNAC 1 cut(s) 272
MalI GATC 3 cut(s) 47, 477, 612
MbiI CCGCTC 1 cut(s) 183
MboI GATC 3 cut(s) 45, 475, 610
MboII GAAGA 1 cut(s) 380
MhlI GDGCHC 3 cut(s) 153, 382, 563
MluCI AATT 4 cut(s) 62, 317, 489, 583
MmeI TCCRAC 2 cut(s) 547, 614
MnlI CCTC 9 cut(s) 18, 21, 79, 197, 217, 247, 331, 424, 492
MspI CCGG 3 cut(s) 21, 400, 533
MspR9I CCNGG 4 cut(s) 21, 22, 401, 533
MvnI CGCG 3 cut(s) 36, 195, 237
MwoI GCNNNNNNNGC 5 cut(s) 89, 98, 192, 451, 625
NciI CCSGG 4 cut(s) 21, 22, 401, 533
NdeII GATC 3 cut(s) 45, 475, 610
NlaIII CATG 2 cut(s) 290, 308
NmuCI GTSAC 1 cut(s) 272
NspI RCATGY 2 cut(s) 290, 308
PaeI GCATGC 1 cut(s) 290
PciSI GCTCTTC 1 cut(s) 363
PfeI GAWTC 2 cut(s) 209, 410
PfoI TCCNGGA 1 cut(s) 531
PkrI GCNGC 4 cut(s) 185, 233, 236, 310
Psp124BI GAGCTC 1 cut(s) 563
RsaI GTAC 2 cut(s) 131, 544
RsaNI GTAC 2 cut(s) 130, 543
SacI GAGCTC 1 cut(s) 563
SapI GCTCTTC 1 cut(s) 363
SatI GCNGC 4 cut(s) 184, 232, 235, 309
Sau3AI GATC 3 cut(s) 45, 475, 610
ScaI AGTACT 1 cut(s) 131
ScrFI CCNGG 4 cut(s) 21, 22, 401, 533
SduI GDGCHC 3 cut(s) 153, 382, 563
SetI ASST 8 cut(s) 90, 123, 244, 330, 375, 517, 563, 571
SfaNI GCATC 2 cut(s) 70, 205
SmaI CCCGGG 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
SphI GCATGC 1 cut(s) 290
Sse9I AATT 4 cut(s) 62, 317, 489, 583
SsiI CCGC 5 cut(s) 183, 193, 232, 235, 445
SspMI CTAG 1 cut(s) 383
SstI GAGCTC 1 cut(s) 563
StyD4I CCNGG 4 cut(s) 19, 20, 399, 531
TaaI ACNGT 2 cut(s) 528, 542
TaqI TCGA 2 cut(s) 478, 563
TasI AATT 4 cut(s) 62, 317, 489, 583
TatI WGTACW 1 cut(s) 129
TauI GCSGC 3 cut(s) 186, 234, 237
TfiI GAWTC 2 cut(s) 209, 410
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 1 cut(s) 346
TspMI CCCGGG 1 cut(s) 20
XceI RCATGY 2 cut(s) 290, 308
XmaI CCCGGG 1 cut(s) 20
XspI CTAG 1 cut(s) 383
ZrmI AGTACT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.