RLG00000034347

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017719
Physical Location & Seq
Forward (+)
41139805 .. 41140464
660 bp
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UTR
Exon/CDS
Intron
RLM00000034347

Sequence Viewer

Length: 660 bp
ATGACTGAAACTTTTGGAAGGAGGAGGCATGCCACTTTGGTCAAGAAAGCCCAAGAATTATCTATTCTATGTGCCGCAGAGGTCGCAGTCATCGCTTTCACAAGCGATGGAAAGCTTCATGAGTATTCTAGCACCAGTGTGGAACACACTCTTTCAAGATACAAGAACAATAAGGGCGGCCTAGTCCTCCCAACCAAGGTGAAATCTGATCCTCCAAAGGAGCGCTGCTGCGAAGCTGCTGCGGAAGAGGAGGATCCAAAATCAAGTGACAAAGTTCTTTATGCACTCAAGGGACAACATGCAGCGCTGAAATTGGACAATCAGCGGAGGATGGGAAAGGCGTTGGATGGCTTAAGTAGGGAAGAGCTGTATGCCCTGGAGCAACAACAAAAGTGGGCGTTAGTATCTGTCATGAAAAAGAAGGAAGAGCTACTTGTGCGGTTGTTGCACAGGTCCAAGGCGCGTGAACAGCAAGCCATTCGGGAGAAGGAGAATTTGAGAAGGGGTTATGAAGTGGGGACGATGGAAAAGCCGTATCTACAACTGTTCCCTGAGTACAGTACGAGTTTCTGCACAAGCTCGAAAGCTGTTACACTTTTGAATTGTCCAACAAAGAAAATGGACACTTCTTTGCACCTTGGGCTGTCACATAACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

220

Amino Acids

24.75

Weight (kDa)

9.27

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 8 - 42 5.5e-13 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 89 - 168 2.2e-07 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017719)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29460
rosa_chinensis RchiOBHm_Chr5g0045241
rosa_laevigata RLG00000034347
rosa_multiflora Rmu_sc0001773.1_g000020 Rmu_sc0007992.1_g000003
rosa_roxburghii Rroxscaffold_1G00035810
rosa_rugosa Rorug05G0222100
rosa_samantha Rh5BG311700 Rh5CG337800 Rh5DG321800
rosa_wichuraiana Rw5G028140 Rw5G028450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 463
AciI CCGC 5 cut(s) 75, 177, 242, 325, 439
AclWI GGATC 3 cut(s) 203, 248, 261
AcsI RAATTY 1 cut(s) 493
AfaI GTAC 2 cut(s) 557, 562
AfeI AGCGCT 2 cut(s) 224, 306
AfiI CCNNNNNNNGG 1 cut(s) 196
AflII CTTAAG 1 cut(s) 352
AgsI TTSAA 2 cut(s) 156, 601
AjnI CCWGG 1 cut(s) 375
AleI CACNNNNGTG 1 cut(s) 137
AluBI AGCT 6 cut(s) 115, 236, 367, 430, 579, 587
AluI AGCT 6 cut(s) 115, 236, 367, 430, 579, 587
AlwI GGATC 3 cut(s) 203, 248, 261
Aor51HI AGCGCT 2 cut(s) 224, 306
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 5 cut(s) 225, 228, 236, 239, 302
ApoI RAATTY 1 cut(s) 493
AspLEI GCGC 3 cut(s) 225, 307, 463
AspS9I GGNCC 1 cut(s) 453
AsuHPI GGTGA 1 cut(s) 211
AvaII GGWCC 1 cut(s) 453
BamHI GGATCC 1 cut(s) 253
BbvI GCAGC 5 cut(s) 212, 215, 223, 226, 314
BccI CCATC 4 cut(s) 101, 325, 341, 517
BceAI ACGGC 1 cut(s) 517
BcgI CGANNNNNNTGC 4 cut(s) 221, 255, 461, 495
BciT130I CCWGG 1 cut(s) 377
BfaI CTAG 2 cut(s) 129, 182
BfoI RGCGCY 2 cut(s) 226, 308
BfrI CTTAAG 1 cut(s) 352
BisI GCNGC 7 cut(s) 75, 178, 226, 229, 237, 240, 303
BlsI GCNGC 7 cut(s) 76, 179, 227, 230, 238, 241, 304
Bme1390I CCNGG 1 cut(s) 377
Bme18I GGWCC 1 cut(s) 453
BmgT120I GGNCC 1 cut(s) 453
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 377
BpmI CTGGAG 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 272
BsaJI CCNNGG 4 cut(s) 195, 375, 456, 637
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 4 cut(s) 195, 375, 456, 637
BseGI GGATG 2 cut(s) 336, 352
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 2 cut(s) 37, 263
BseXI GCAGC 5 cut(s) 212, 215, 223, 226, 314
BsgI GTGCAG 1 cut(s) 556
Bsh1236I CGCG 1 cut(s) 463
BshFI GGCC 1 cut(s) 180
BslFI GGGAC 2 cut(s) 306, 532
BslI CCNNNNNNNGG 1 cut(s) 196
BsmFI GGGAC 2 cut(s) 306, 532
BsnI GGCC 1 cut(s) 180
Bsp143I GATC 2 cut(s) 208, 253
BspACI CCGC 5 cut(s) 75, 177, 242, 325, 439
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 544
BspFNI CGCG 1 cut(s) 463
BspHI TCATGA 2 cut(s) 118, 411
BspLI GGNNCC 1 cut(s) 255
BspPI GGATC 3 cut(s) 203, 248, 261
BspQI GCTCTTC 2 cut(s) 357, 420
BspTI CTTAAG 1 cut(s) 352
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 4 cut(s) 195, 375, 456, 637
BssMI GATC 2 cut(s) 208, 253
BssT1I CCWWGG 3 cut(s) 195, 456, 637
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 2 cut(s) 546, 560
Bst6I CTCTTC 3 cut(s) 240, 357, 420
BstAFI CTTAAG 1 cut(s) 352
BstC8I GCNNGC 2 cut(s) 30, 474
BstDEI CTNAG 1 cut(s) 552
BstF5I GGATG 2 cut(s) 336, 352
BstFNI CGCG 1 cut(s) 463
BstH2I RGCGCY 2 cut(s) 226, 308
BstHHI GCGC 3 cut(s) 225, 307, 463
BstKTI GATC 2 cut(s) 211, 256
BstMBI GATC 2 cut(s) 208, 253
BstMWI GCNNNNNNNGC 6 cut(s) 83, 92, 436, 445, 469, 640
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 2 cut(s) 32, 302
BstSCI CCNGG 1 cut(s) 375
BstUI CGCG 1 cut(s) 463
BstV1I GCAGC 5 cut(s) 212, 215, 223, 226, 314
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BsuRI GGCC 1 cut(s) 180
BtgZI GCGATG 2 cut(s) 76, 120
BtsCI GGATG 2 cut(s) 336, 352
BtsIMutI CAGTG 1 cut(s) 142
Cac8I GCNNGC 2 cut(s) 30, 474
CciI TCATGA 2 cut(s) 118, 411
CfoI GCGC 3 cut(s) 225, 307, 463
Cfr13I GGNCC 1 cut(s) 453
Csp6I GTAC 2 cut(s) 556, 561
CspCI CAANNNNNGTGG 2 cut(s) 374, 409
CviAII CATG 4 cut(s) 29, 119, 299, 412
CviQI GTAC 2 cut(s) 556, 561
DdeI CTNAG 1 cut(s) 552
DpnI GATC 2 cut(s) 210, 255
DpnII GATC 2 cut(s) 208, 253
Eam1104I CTCTTC 3 cut(s) 240, 357, 420
EarI CTCTTC 3 cut(s) 240, 357, 420
Eco130I CCWWGG 3 cut(s) 195, 456, 637
Eco47I GGWCC 1 cut(s) 453
Eco47III AGCGCT 2 cut(s) 224, 306
EcoRII CCWGG 1 cut(s) 375
EcoT14I CCWWGG 3 cut(s) 195, 456, 637
ErhI CCWWGG 3 cut(s) 195, 456, 637
FaeI CATG 4 cut(s) 32, 122, 302, 415
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FaqI GGGAC 2 cut(s) 306, 532
FatI CATG 4 cut(s) 28, 118, 298, 411
Fnu4HI GCNGC 7 cut(s) 75, 178, 226, 229, 237, 240, 303
FokI GGATG 2 cut(s) 343, 359
Fsp4HI GCNGC 7 cut(s) 75, 178, 226, 229, 237, 240, 303
FspBI CTAG 2 cut(s) 129, 182
GlaI GCGC 3 cut(s) 224, 306, 462
GluI GCNGC 7 cut(s) 75, 178, 226, 229, 237, 240, 303
GsuI CTGGAG 1 cut(s) 398
HaeII RGCGCY 2 cut(s) 226, 308
HaeIII GGCC 1 cut(s) 180
HhaI GCGC 3 cut(s) 225, 307, 463
Hin1II CATG 4 cut(s) 32, 122, 302, 415
Hin6I GCGC 3 cut(s) 223, 305, 461
HinP1I GCGC 3 cut(s) 223, 305, 461
HindIII AAGCTT 1 cut(s) 113
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 467
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 5 cut(s) 43, 119, 156, 412, 482
Hpy8I GTNNAC 1 cut(s) 467
HpyAV CCTTC 4 cut(s) 12, 415, 481, 495
HpyCH4III ACNGT 2 cut(s) 546, 560
HpyCH4V TGCA 5 cut(s) 284, 302, 448, 573, 634
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 92, 436, 445, 469, 640
HpyF3I CTNAG 1 cut(s) 552
Hsp92II CATG 4 cut(s) 32, 122, 302, 415
HspAI GCGC 3 cut(s) 223, 305, 461
Kzo9I GATC 2 cut(s) 208, 253
LguI GCTCTTC 2 cut(s) 357, 420
LmnI GCTCC 2 cut(s) 220, 379
LpnPI CCDG 5 cut(s) 148, 362, 389, 436, 564
Lsp1109I GCAGC 5 cut(s) 212, 215, 223, 226, 314
MaeI CTAG 2 cut(s) 129, 182
MaeIII GTNAC 3 cut(s) 266, 589, 645
MalI GATC 2 cut(s) 210, 255
MboI GATC 2 cut(s) 208, 253
MboII GAAGA 3 cut(s) 257, 374, 437
MflI RGATCY 1 cut(s) 253
MluCI AATT 4 cut(s) 56, 311, 493, 601
MmeI TCCRAC 2 cut(s) 324, 632
MnlI CCTC 8 cut(s) 15, 18, 73, 197, 222, 241, 244, 321
MseI TTAA 1 cut(s) 353
MslI CAYNNNNRTG 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 325
MspCI CTTAAG 1 cut(s) 352
MspR9I CCNGG 1 cut(s) 377
MvaI CCWGG 1 cut(s) 377
MvnI CGCG 1 cut(s) 463
MwoI GCNNNNNNNGC 6 cut(s) 83, 92, 436, 445, 469, 640
NdeII GATC 2 cut(s) 208, 253
NlaIII CATG 4 cut(s) 32, 122, 302, 415
NlaIV GGNNCC 1 cut(s) 255
NmuCI GTSAC 2 cut(s) 266, 645
NspI RCATGY 2 cut(s) 32, 302
OliI CACNNNNGTG 1 cut(s) 137
PaeI GCATGC 1 cut(s) 32
PagI TCATGA 2 cut(s) 118, 411
PciSI GCTCTTC 2 cut(s) 357, 420
PkrI GCNGC 7 cut(s) 76, 179, 227, 230, 238, 241, 304
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 453
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 2 cut(s) 557, 562
RsaNI GTAC 2 cut(s) 556, 561
RseI CAYNNNNRTG 1 cut(s) 137
SapI GCTCTTC 2 cut(s) 357, 420
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 7 cut(s) 75, 178, 226, 229, 237, 240, 303
Sau3AI GATC 2 cut(s) 208, 253
Sau96I GGNCC 1 cut(s) 453
ScrFI CCNGG 1 cut(s) 377
SinI GGWCC 1 cut(s) 453
SmiMI CAYNNNNRTG 1 cut(s) 137
SmlI CTYRAG 2 cut(s) 287, 352
SmoI CTYRAG 2 cut(s) 287, 352
SphI GCATGC 1 cut(s) 32
Sse9I AATT 4 cut(s) 56, 311, 493, 601
SsiI CCGC 5 cut(s) 75, 177, 242, 325, 439
SspMI CTAG 2 cut(s) 129, 182
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 3 cut(s) 195, 456, 637
TaaI ACNGT 2 cut(s) 546, 560
TaqI TCGA 1 cut(s) 581
TasI AATT 4 cut(s) 56, 311, 493, 601
TatI WGTACW 1 cut(s) 555
TauI GCSGC 2 cut(s) 77, 180
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 2 cut(s) 266, 645
TseI GCWGC 5 cut(s) 225, 228, 236, 239, 302
Tsp45I GTSAC 2 cut(s) 266, 645
TspDTI ATGAA 3 cut(s) 107, 428, 525
TspRI CASTG 1 cut(s) 142
Vha464I CTTAAG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 453
XapI RAATTY 1 cut(s) 493
XceI RCATGY 2 cut(s) 32, 302
XspI CTAG 2 cut(s) 129, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.