transcription regulatory region sequence-specific DNA binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G12650 AT1G12650 AT1G12650 AT1G12650 |
| fragaria_vesca | FvH4_3g24970 FvH4_7g07500 |
| malus_domestica | MD03G1146200.v1.1 MD11G1165500.v1.1 |
| prunus_persica | Prupe.6G131000_v2.0.a1 Prupe.8G125000_v2.0.a1 |
| pyrus_communis | pycom03g10060 |
| rosa_chinensis | RchiOBHm_Chr5g0045251 |
| rosa_laevigata | RLG00000034349 |
| rosa_multiflora | Rmu_sc0001773.1_g000021 Rmu_sc0001773.1_g000022 Rmu_sc0007992.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00035800 |
| rosa_rugosa | Rorug05G0222100 |
| rosa_samantha | Rh5AG303200 Rh5BG311800 Rh5CG337900 Rh5DG321900 |
| rosa_wichuraiana | Rw5G028150 Rw5G028400 Rw5G028440 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 716 |
| Acc36I | ACCTGC | 2 cut(s) | 239, 634 |
| AccB1I | GGYRCC | 1 cut(s) | 410 |
| AccBSI | CCGCTC | 1 cut(s) | 1680 |
| AccII | CGCG | 2 cut(s) | 914, 1266 |
| AciI | CCGC | 4 cut(s) | 339, 506, 752, 1680 |
| AclWI | GGATC | 1 cut(s) | 692 |
| AcoI | YGGCCR | 3 cut(s) | 336, 559, 1986 |
| AcsI | RAATTY | 7 cut(s) | 592, 857, 1046, 1139, 1279, 1544, 2018 |
| AcuI | CTGAAG | 3 cut(s) | 492, 1019, 1038 |
| AcyI | GRCGYC | 2 cut(s) | 213, 411 |
| AfaI | GTAC | 9 cut(s) | 245, 308, 332, 479, 485, 809, 1175, 1296, 1752 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 835, 966 |
| AflIII | ACRYGT | 3 cut(s) | 480, 898, 1303 |
| AgsI | TTSAA | 6 cut(s) | 160, 361, 1235, 1247, 1382, 1717 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 217 |
| AhlI | ACTAGT | 2 cut(s) | 104, 638 |
| AjiI | CACGTC | 1 cut(s) | 1306 |
| AjnI | CCWGG | 3 cut(s) | 373, 833, 1224 |
| AluBI | AGCT | 3 cut(s) | 186, 605, 1374 |
| AluI | AGCT | 3 cut(s) | 186, 605, 1374 |
| Alw21I | GWGCWC | 3 cut(s) | 112, 263, 946 |
| Alw26I | GTCTC | 4 cut(s) | 221, 659, 1515, 2072 |
| AlwI | GGATC | 1 cut(s) | 692 |
| AoxI | GGCC | 6 cut(s) | 70, 336, 559, 830, 1719, 1986 |
| ApeKI | GCWGC | 2 cut(s) | 1805, 1889 |
| ApoI | RAATTY | 7 cut(s) | 592, 857, 1046, 1139, 1279, 1544, 2018 |
| AseI | ATTAAT | 2 cut(s) | 1128, 1533 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1151 |
| AspLEI | GCGC | 3 cut(s) | 413, 916, 1805 |
| AspS9I | GGNCC | 4 cut(s) | 371, 831, 838, 1685 |
| AsuHPI | GGTGA | 3 cut(s) | 359, 1007, 1747 |
| AvaII | GGWCC | 3 cut(s) | 371, 838, 1685 |
| BalI | TGGCCA | 1 cut(s) | 1988 |
| BanI | GGYRCC | 1 cut(s) | 410 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1014, 1046, 2127, 2159 |
| BbsI | GAAGAC | 2 cut(s) | 373, 817 |
| Bbv12I | GWGCWC | 3 cut(s) | 112, 263, 946 |
| BbvI | GCAGC | 2 cut(s) | 1792, 1901 |
| BccI | CCATC | 4 cut(s) | 286, 986, 1112, 1391 |
| BceAI | ACGGC | 2 cut(s) | 57, 241 |
| BciT130I | CCWGG | 3 cut(s) | 375, 835, 1226 |
| BclI | TGATCA | 2 cut(s) | 136, 1437 |
| BcoDI | GTCTC | 4 cut(s) | 221, 659, 1515, 2072 |
| BcuI | ACTAGT | 2 cut(s) | 104, 638 |
| BfaI | CTAG | 9 cut(s) | 105, 390, 639, 917, 1674, 1754, 1763, 1863, 2147 |
| BfmI | CTRYAG | 2 cut(s) | 1806, 2025 |
| BfoI | RGCGCY | 2 cut(s) | 414, 1806 |
| BfuAI | ACCTGC | 2 cut(s) | 239, 634 |
| BglII | AGATCT | 2 cut(s) | 354, 2084 |
| BisI | GCNGC | 3 cut(s) | 339, 1806, 1890 |
| BlsI | GCNGC | 3 cut(s) | 340, 1807, 1891 |
| BmcAI | AGTACT | 2 cut(s) | 308, 1296 |
| Bme1390I | CCNGG | 3 cut(s) | 375, 835, 1226 |
| Bme18I | GGWCC | 3 cut(s) | 371, 838, 1685 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 217 |
| BmgBI | CACGTC | 1 cut(s) | 1306 |
| BmgT120I | GGNCC | 4 cut(s) | 371, 831, 838, 1685 |
| BmiI | GGNNCC | 4 cut(s) | 372, 412, 839, 1327 |
| BmrFI | CCNGG | 3 cut(s) | 375, 835, 1226 |
| BmrI | ACTGGG | 1 cut(s) | 2126 |
| BmsI | GCATC | 1 cut(s) | 1455 |
| BmuI | ACTGGG | 1 cut(s) | 2126 |
| BoxI | GACNNNNGTC | 1 cut(s) | 671 |
| BpiI | GAAGAC | 2 cut(s) | 373, 817 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1317, 1349 |
| BpmI | CTGGAG | 1 cut(s) | 510 |
| Bsa29I | ATCGAT | 2 cut(s) | 984, 1110 |
| BsaAI | YACGTR | 2 cut(s) | 481, 956 |
| BsaBI | GATNNNNATC | 2 cut(s) | 138, 141 |
| BsaHI | GRCGYC | 2 cut(s) | 213, 411 |
| BsaI | GGTCTC | 4 cut(s) | 221, 659, 1515, 2072 |
| BsaJI | CCNNGG | 7 cut(s) | 319, 406, 459, 833, 834, 937, 1238 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 835, 966 |
| Bse118I | RCCGGY | 1 cut(s) | 561 |
| Bse1I | ACTGG | 3 cut(s) | 493, 1558, 2132 |
| Bse3DI | GCAATG | 2 cut(s) | 2070, 2138 |
| Bse8I | GATNNNNATC | 2 cut(s) | 138, 141 |
| BseBI | CCWGG | 3 cut(s) | 375, 835, 1226 |
| BseCI | ATCGAT | 2 cut(s) | 984, 1110 |
| BseDI | CCNNGG | 7 cut(s) | 319, 406, 459, 833, 834, 937, 1238 |
| BseGI | GGATG | 1 cut(s) | 1575 |
| BseJI | GATNNNNATC | 2 cut(s) | 138, 141 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 835, 966 |
| BseMI | GCAATG | 2 cut(s) | 2070, 2138 |
| BseMII | CTCAG | 2 cut(s) | 213, 711 |
| BseNI | ACTGG | 3 cut(s) | 493, 1558, 2132 |
| BseRI | GAGGAG | 3 cut(s) | 239, 733, 1553 |
| BseXI | GCAGC | 2 cut(s) | 1792, 1901 |
| BseYI | CCCAGC | 1 cut(s) | 1966 |
| BsgI | GTGCAG | 1 cut(s) | 1908 |
| Bsh1236I | CGCG | 2 cut(s) | 914, 1266 |
| BshFI | GGCC | 6 cut(s) | 72, 338, 561, 832, 1721, 1988 |
| BshNI | GGYRCC | 1 cut(s) | 410 |
| BshVI | ATCGAT | 2 cut(s) | 984, 1110 |
| BsiHKAI | GWGCWC | 3 cut(s) | 112, 263, 946 |
| BsiSI | CCGG | 4 cut(s) | 342, 562, 829, 1800 |
| BslFI | GGGAC | 4 cut(s) | 187, 556, 1655, 1829 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 835, 966 |
| BsmAI | GTCTC | 4 cut(s) | 221, 659, 1515, 2072 |
| BsmFI | GGGAC | 4 cut(s) | 187, 556, 1655, 1829 |
| BsmI | GAATGC | 1 cut(s) | 2108 |
| BsnI | GGCC | 6 cut(s) | 72, 338, 561, 832, 1721, 1988 |
| Bso31I | GGTCTC | 4 cut(s) | 221, 659, 1515, 2072 |
| Bsp1286I | GDGCHC | 3 cut(s) | 112, 263, 946 |
| Bsp1407I | TGTACA | 1 cut(s) | 483 |
| Bsp19I | CCATGG | 1 cut(s) | 319 |
| BspACI | CCGC | 4 cut(s) | 339, 506, 752, 1680 |
| BspANI | GGCC | 6 cut(s) | 72, 338, 561, 832, 1721, 1988 |
| BspCNI | CTCAG | 2 cut(s) | 214, 710 |
| BspDI | ATCGAT | 2 cut(s) | 984, 1110 |
| BspFNI | CGCG | 2 cut(s) | 914, 1266 |
| BspHI | TCATGA | 4 cut(s) | 687, 1114, 1143, 1440 |
| BspLI | GGNNCC | 4 cut(s) | 372, 412, 839, 1327 |
| BspMAI | CTGCAG | 2 cut(s) | 1810, 2029 |
| BspMI | ACCTGC | 2 cut(s) | 239, 634 |
| BspPI | GGATC | 1 cut(s) | 692 |
| BspT107I | GGYRCC | 1 cut(s) | 410 |
| BspTNI | GGTCTC | 4 cut(s) | 221, 659, 1515, 2072 |
| BsrBI | CCGCTC | 1 cut(s) | 1680 |
| BsrDI | GCAATG | 2 cut(s) | 2070, 2138 |
| BsrFI | RCCGGY | 1 cut(s) | 561 |
| BsrGI | TGTACA | 1 cut(s) | 483 |
| BsrI | ACTGG | 3 cut(s) | 493, 1558, 2132 |
| BssAI | RCCGGY | 1 cut(s) | 561 |
| BssECI | CCNNGG | 7 cut(s) | 319, 406, 459, 833, 834, 937, 1238 |
| BssNI | GRCGYC | 2 cut(s) | 213, 411 |
| BssT1I | CCWWGG | 4 cut(s) | 319, 459, 937, 1238 |
| Bst2UI | CCWGG | 3 cut(s) | 375, 835, 1226 |
| Bst4CI | ACNGT | 6 cut(s) | 97, 128, 243, 269, 934, 1101 |
| Bst6I | CTCTTC | 2 cut(s) | 468, 751 |
| BstACI | GRCGYC | 2 cut(s) | 213, 411 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1859, 1886, 2114 |
| BstAUI | TGTACA | 1 cut(s) | 483 |
| BstBAI | YACGTR | 2 cut(s) | 481, 956 |
| BstC8I | GCNNGC | 4 cut(s) | 559, 563, 1349, 1810 |
| BstDEI | CTNAG | 4 cut(s) | 222, 697, 1298, 1427 |
| BstDSI | CCRYGG | 1 cut(s) | 319 |
| BstF5I | GGATG | 1 cut(s) | 1575 |
| BstFNI | CGCG | 2 cut(s) | 914, 1266 |
| BstH2I | RGCGCY | 2 cut(s) | 414, 1806 |
| BstHHI | GCGC | 3 cut(s) | 413, 916, 1805 |
| BstMAI | GTCTC | 4 cut(s) | 221, 659, 1515, 2072 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 1763, 1809, 1859, 1868, 1877, 1886, 2114 |
| BstNI | CCWGG | 3 cut(s) | 375, 835, 1226 |
| BstNSI | RCATGY | 3 cut(s) | 284, 902, 1351 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 671 |
| BstSCI | CCNGG | 3 cut(s) | 373, 833, 1224 |
| BstSFI | CTRYAG | 2 cut(s) | 1806, 2025 |
| BstUI | CGCG | 2 cut(s) | 914, 1266 |
| BstV1I | GCAGC | 2 cut(s) | 1792, 1901 |
| BstV2I | GAAGAC | 2 cut(s) | 373, 817 |
| BstX2I | RGATCY | 2 cut(s) | 354, 2084 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 170 |
| BstYI | RGATCY | 2 cut(s) | 354, 2084 |
| Bsu15I | ATCGAT | 2 cut(s) | 984, 1110 |
| BsuRI | GGCC | 6 cut(s) | 72, 338, 561, 832, 1721, 1988 |
| BsuTUI | ATCGAT | 2 cut(s) | 984, 1110 |
| BtgI | CCRYGG | 1 cut(s) | 319 |
| BtrI | CACGTC | 1 cut(s) | 1306 |
| BtsCI | GGATG | 1 cut(s) | 1575 |
| BtsIMutI | CAGTG | 5 cut(s) | 486, 705, 930, 1188, 1914 |
| BveI | ACCTGC | 2 cut(s) | 239, 634 |
| Cac8I | GCNNGC | 4 cut(s) | 559, 563, 1349, 1810 |
| CciI | TCATGA | 4 cut(s) | 687, 1114, 1143, 1440 |
| CfoI | GCGC | 3 cut(s) | 413, 916, 1805 |
| Cfr10I | RCCGGY | 1 cut(s) | 561 |
| Cfr13I | GGNCC | 4 cut(s) | 371, 831, 838, 1685 |
| ClaI | ATCGAT | 2 cut(s) | 984, 1110 |
| CseI | GACGC | 3 cut(s) | 221, 661, 1652 |
| CsiI | ACCWGGT | 1 cut(s) | 1224 |
| Csp6I | GTAC | 9 cut(s) | 244, 307, 331, 478, 484, 808, 1174, 1295, 1751 |
| CviQI | GTAC | 9 cut(s) | 244, 307, 331, 478, 484, 808, 1174, 1295, 1751 |
| DdeI | CTNAG | 4 cut(s) | 222, 697, 1298, 1427 |
| DinI | GGCGCC | 1 cut(s) | 412 |
| DriI | GACNNNNNGTC | 1 cut(s) | 217 |
| EaeI | YGGCCR | 3 cut(s) | 336, 559, 1986 |
| Eam1104I | CTCTTC | 2 cut(s) | 468, 751 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 217 |
| EarI | CTCTTC | 2 cut(s) | 468, 751 |
| Eco130I | CCWWGG | 4 cut(s) | 319, 459, 937, 1238 |
| Eco31I | GGTCTC | 4 cut(s) | 221, 659, 1515, 2072 |
| Eco47I | GGWCC | 3 cut(s) | 371, 838, 1685 |
| Eco57I | CTGAAG | 3 cut(s) | 492, 1019, 1038 |
| EcoO109I | RGGNCCY | 1 cut(s) | 371 |
| EcoRI | GAATTC | 3 cut(s) | 1139, 1544, 2018 |
| EcoRII | CCWGG | 3 cut(s) | 373, 833, 1224 |
| EcoT14I | CCWWGG | 4 cut(s) | 319, 459, 937, 1238 |
| EgeI | GGCGCC | 1 cut(s) | 412 |
| EheI | GGCGCC | 1 cut(s) | 412 |
| ErhI | CCWWGG | 4 cut(s) | 319, 459, 937, 1238 |
| FaqI | GGGAC | 4 cut(s) | 187, 556, 1655, 1829 |
| FauI | CCCGC | 1 cut(s) | 499 |
| FauNDI | CATATG | 1 cut(s) | 1356 |
| FbaI | TGATCA | 2 cut(s) | 136, 1437 |
| Fnu4HI | GCNGC | 3 cut(s) | 339, 1806, 1890 |
| FokI | GGATG | 1 cut(s) | 1582 |
| Fsp4HI | GCNGC | 3 cut(s) | 339, 1806, 1890 |
| FspBI | CTAG | 9 cut(s) | 105, 390, 639, 917, 1674, 1754, 1763, 1863, 2147 |
| GlaI | GCGC | 3 cut(s) | 412, 915, 1804 |
| GluI | GCNGC | 3 cut(s) | 339, 1806, 1890 |
| GsaI | CCCAGC | 1 cut(s) | 1970 |
| GsuI | CTGGAG | 1 cut(s) | 510 |
| HaeII | RGCGCY | 2 cut(s) | 414, 1806 |
| HaeIII | GGCC | 6 cut(s) | 72, 338, 561, 832, 1721, 1988 |
| HapII | CCGG | 4 cut(s) | 342, 562, 829, 1800 |
| HgaI | GACGC | 3 cut(s) | 221, 661, 1652 |
| HhaI | GCGC | 3 cut(s) | 413, 916, 1805 |
| Hin1I | GRCGYC | 2 cut(s) | 213, 411 |
| Hin6I | GCGC | 3 cut(s) | 411, 914, 1803 |
| HinP1I | GCGC | 3 cut(s) | 411, 914, 1803 |
| HincII | GTYRAC | 3 cut(s) | 600, 1489, 1693 |
| HindII | GTYRAC | 3 cut(s) | 600, 1489, 1693 |
| HindIII | AAGCTT | 1 cut(s) | 1372 |
| HpaI | GTTAAC | 1 cut(s) | 1489 |
| HpaII | CCGG | 4 cut(s) | 342, 562, 829, 1800 |
| HphI | GGTGA | 3 cut(s) | 359, 1007, 1747 |
| Hpy166II | GTNNAC | 6 cut(s) | 484, 486, 600, 1489, 1685, 1693 |
| Hpy188I | TCNGA | 8 cut(s) | 68, 124, 182, 223, 1291, 1417, 1615, 1933 |
| Hpy8I | GTNNAC | 6 cut(s) | 484, 486, 600, 1489, 1685, 1693 |
| Hpy99I | CGWCG | 1 cut(s) | 1475 |
| HpyAV | CCTTC | 4 cut(s) | 199, 960, 1827, 2128 |
| HpyCH4III | ACNGT | 6 cut(s) | 97, 128, 243, 269, 934, 1101 |
| HpyCH4IV | ACGT | 4 cut(s) | 480, 955, 1305, 1473 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 1763, 1809, 1859, 1868, 1877, 1886, 2114 |
| HpyF3I | CTNAG | 4 cut(s) | 222, 697, 1298, 1427 |
| HpySE526I | ACGT | 4 cut(s) | 480, 955, 1305, 1473 |
| Hsp92I | GRCGYC | 2 cut(s) | 213, 411 |
| HspAI | GCGC | 3 cut(s) | 411, 914, 1803 |
| KasI | GGCGCC | 1 cut(s) | 410 |
| KroI | GCCGGC | 1 cut(s) | 561 |
| KroNI | GCCGGC | 1 cut(s) | 563 |
| Ksp22I | TGATCA | 2 cut(s) | 136, 1437 |
| KspAI | GTTAAC | 1 cut(s) | 1489 |
| LmnI | GCTCC | 5 cut(s) | 191, 528, 941, 1325, 1677 |
| Lsp1109I | GCAGC | 2 cut(s) | 1792, 1901 |
| LweI | GCATC | 1 cut(s) | 1455 |
| MabI | ACCWGGT | 1 cut(s) | 1224 |
| MaeI | CTAG | 9 cut(s) | 105, 390, 639, 917, 1674, 1754, 1763, 1863, 2147 |
| MaeII | ACGT | 4 cut(s) | 480, 955, 1305, 1473 |
| MaeIII | GTNAC | 4 cut(s) | 97, 995, 1457, 1549 |
| MbiI | CCGCTC | 1 cut(s) | 1680 |
| MfeI | CAATTG | 1 cut(s) | 654 |
| MflI | RGATCY | 2 cut(s) | 354, 2084 |
| MhlI | GDGCHC | 3 cut(s) | 112, 263, 946 |
| MlsI | TGGCCA | 1 cut(s) | 1988 |
| MluNI | TGGCCA | 1 cut(s) | 1988 |
| Mly113I | GGCGCC | 1 cut(s) | 411 |
| MlyI | GAGTC | 4 cut(s) | 227, 335, 431, 1619 |
| MmeI | TCCRAC | 6 cut(s) | 133, 217, 475, 1191, 1303, 1593 |
| Mox20I | TGGCCA | 1 cut(s) | 1988 |
| MroNI | GCCGGC | 1 cut(s) | 561 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1151 |
| MscI | TGGCCA | 1 cut(s) | 1988 |
| MseI | TTAA | 5 cut(s) | 453, 1128, 1488, 1533, 1559 |
| MslI | CAYNNNNRTG | 2 cut(s) | 147, 2060 |
| Msp20I | TGGCCA | 1 cut(s) | 1988 |
| MspI | CCGG | 4 cut(s) | 342, 562, 829, 1800 |
| MspR9I | CCNGG | 3 cut(s) | 375, 835, 1226 |
| MunI | CAATTG | 1 cut(s) | 654 |
| Mva1269I | GAATGC | 1 cut(s) | 2108 |
| MvaI | CCWGG | 3 cut(s) | 375, 835, 1226 |
| MvnI | CGCG | 2 cut(s) | 914, 1266 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 1763, 1809, 1859, 1868, 1877, 1886, 2114 |
| NaeI | GCCGGC | 1 cut(s) | 563 |
| NarI | GGCGCC | 1 cut(s) | 411 |
| NcoI | CCATGG | 1 cut(s) | 319 |
| NdeI | CATATG | 1 cut(s) | 1356 |
| NgoMIV | GCCGGC | 1 cut(s) | 561 |
| NlaIV | GGNNCC | 4 cut(s) | 372, 412, 839, 1327 |
| NmeAIII | GCCGAG | 2 cut(s) | 241, 387 |
| NmuCI | GTSAC | 1 cut(s) | 995 |
| NspI | RCATGY | 3 cut(s) | 284, 902, 1351 |
| PaeI | GCATGC | 1 cut(s) | 1351 |
| PagI | TCATGA | 4 cut(s) | 687, 1114, 1143, 1440 |
| PasI | CCCWGGG | 1 cut(s) | 834 |
| PciI | ACATGT | 1 cut(s) | 898 |
| PctI | GAATGC | 1 cut(s) | 2108 |
| PdiI | GCCGGC | 1 cut(s) | 563 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1151 |
| PfeI | GAWTC | 7 cut(s) | 156, 364, 447, 703, 924, 1243, 1481 |
| PkrI | GCNGC | 3 cut(s) | 340, 1807, 1891 |
| PleI | GAGTC | 4 cut(s) | 226, 334, 430, 1618 |
| PluTI | GGCGCC | 1 cut(s) | 414 |
| PpsI | GAGTC | 4 cut(s) | 226, 334, 430, 1618 |
| Ppu21I | YACGTR | 2 cut(s) | 481, 956 |
| PpuMI | RGGWCCY | 1 cut(s) | 371 |
| PscI | ACATGT | 1 cut(s) | 898 |
| PshAI | GACNNNNGTC | 1 cut(s) | 671 |
| PshBI | ATTAAT | 2 cut(s) | 1128, 1533 |
| PsiI | TTATAA | 1 cut(s) | 716 |
| Psp5II | RGGWCCY | 1 cut(s) | 371 |
| Psp6I | CCWGG | 3 cut(s) | 373, 833, 1224 |
| PspFI | CCCAGC | 1 cut(s) | 1966 |
| PspGI | CCWGG | 3 cut(s) | 373, 833, 1224 |
| PspN4I | GGNNCC | 4 cut(s) | 372, 412, 839, 1327 |
| PspPI | GGNCC | 4 cut(s) | 371, 831, 838, 1685 |
| PspPPI | RGGWCCY | 1 cut(s) | 371 |
| PsrI | GAACNNNNNNTAC | 8 cut(s) | 257, 289, 299, 331, 1743, 1775, 2025, 2057 |
| PstI | CTGCAG | 2 cut(s) | 1810, 2029 |
| PsuI | RGATCY | 2 cut(s) | 354, 2084 |
| RsaI | GTAC | 9 cut(s) | 245, 308, 332, 479, 485, 809, 1175, 1296, 1752 |
| RsaNI | GTAC | 9 cut(s) | 244, 307, 331, 478, 484, 808, 1174, 1295, 1751 |
| RseI | CAYNNNNRTG | 2 cut(s) | 147, 2060 |
| SaqAI | TTAA | 5 cut(s) | 453, 1128, 1488, 1533, 1559 |
| SatI | GCNGC | 3 cut(s) | 339, 1806, 1890 |
| Sau96I | GGNCC | 4 cut(s) | 371, 831, 838, 1685 |
| ScaI | AGTACT | 2 cut(s) | 308, 1296 |
| SchI | GAGTC | 4 cut(s) | 227, 335, 431, 1619 |
| ScrFI | CCNGG | 3 cut(s) | 375, 835, 1226 |
| SduI | GDGCHC | 3 cut(s) | 112, 263, 946 |
| SexAI | ACCWGGT | 1 cut(s) | 1224 |
| SfaNI | GCATC | 1 cut(s) | 1455 |
| SfcI | CTRYAG | 2 cut(s) | 1806, 2025 |
| SfoI | GGCGCC | 1 cut(s) | 412 |
| SinI | GGWCC | 3 cut(s) | 371, 838, 1685 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 147, 2060 |
| SpeI | ACTAGT | 2 cut(s) | 104, 638 |
| SphI | GCATGC | 1 cut(s) | 1351 |
| SsiI | CCGC | 4 cut(s) | 339, 506, 752, 1680 |
| SspDI | GGCGCC | 1 cut(s) | 410 |
| SspI | AATATT | 1 cut(s) | 1366 |
| SspMI | CTAG | 9 cut(s) | 105, 390, 639, 917, 1674, 1754, 1763, 1863, 2147 |
| StyD4I | CCNGG | 3 cut(s) | 373, 833, 1224 |
| StyI | CCWWGG | 4 cut(s) | 319, 459, 937, 1238 |
| TaaI | ACNGT | 6 cut(s) | 97, 128, 243, 269, 934, 1101 |
| TaiI | ACGT | 4 cut(s) | 483, 958, 1308, 1476 |
| TaqI | TCGA | 6 cut(s) | 82, 263, 984, 1110, 1470, 1662 |
| TatI | WGTACW | 6 cut(s) | 306, 483, 807, 1173, 1294, 1750 |
| TauI | GCSGC | 1 cut(s) | 341 |
| TfiI | GAWTC | 7 cut(s) | 156, 364, 447, 703, 924, 1243, 1481 |
| Tru1I | TTAA | 5 cut(s) | 453, 1128, 1488, 1533, 1559 |
| Tru9I | TTAA | 5 cut(s) | 453, 1128, 1488, 1533, 1559 |
| TscAI | CASTG | 5 cut(s) | 493, 705, 937, 1188, 1921 |
| TseFI | GTSAC | 1 cut(s) | 995 |
| TseI | GCWGC | 2 cut(s) | 1805, 1889 |
| Tsp45I | GTSAC | 1 cut(s) | 995 |
| TspRI | CASTG | 5 cut(s) | 493, 705, 937, 1188, 1921 |
| VpaK11BI | GGWCC | 3 cut(s) | 371, 838, 1685 |
| VspI | ATTAAT | 2 cut(s) | 1128, 1533 |
| XapI | RAATTY | 7 cut(s) | 592, 857, 1046, 1139, 1279, 1544, 2018 |
| XceI | RCATGY | 3 cut(s) | 284, 902, 1351 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1729 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1151 |
| XspI | CTAG | 9 cut(s) | 105, 390, 639, 917, 1674, 1754, 1763, 1863, 2147 |
| ZrmI | AGTACT | 2 cut(s) | 308, 1296 |