MD03G1146200.v1.1

Ribosomal RNA processing protein 36 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0007303
Physical Location & Seq
Reverse (-)
16021555 .. 16025435
3881 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1146200.v1.1.491

Sequence Viewer

Length: 720 bp
ATGTTAAAACCTGGCAGCTCGATGGGAATGCCAACCAAAACAAAGTTCGAAGAACCTGAATCTTCGTCTTCTGAGGATGAGGAGGAGATAGAGCAGGCGCTTGCAGATGTGACATTTGGGGAACTGCAGAAGGCACGCTCGAACGGGTCACATTTAGTGCACCTTAAGCCTAAAGAAGAGAAGAAGGGTGGCCGGGCGAACAAGAACCGGCCGATGGAGGTTACTTGCACAAAGCCTGTCCCTAGATTTCGAGAAGTCATTCAAGGTTCGAAAAAGGTGGTACGGGACCCACGTTTCGAATCTTTATGTGGAGAACTTGATGTTGACCGGAAGAAATATCGCTTTTTATTTGAGGAGGAGCTTCCTGCCGAAAAAGAGGAACTACAGAAGCAAATCAAGAAATCTAAGGACCCAGAAACCATTGAAGAACTAAAGAAACACATATCTTTGATTGATAAACAGCTAAAATCTGATTCAGCTAAGGGTACTGAAGCTGCAATACTGACTGAGCACAAGAAAAAAGAGAGAAAAGCAGCAAAGGAAGGGAAGCAACCCTTTTTCCTTAAGAAATCTGAGATCCGAAAGAAAAGACTCATGGAGAAGTATAAACAACTCAAGGCATCTGGCAAGCTCGAAGCCTTCATTGAGAAAAGGCGCAGGAAGAATGCAGCGAAGGACCACAGATACATGCCATACCGCAGGCCCGACGCTATCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRP36

Protein Analysis

240

Amino Acids

27.75

Weight (kDa)

9.62

Isoelectric Point (pI)

67.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRP36 PF06102 65 - 228 1.2e-47 rRNA biogenesis protein RRP36
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 697
AclWI GGATC 1 cut(s) 571
AcoI YGGCCR 2 cut(s) 190, 209
AcuI CTGAAG 1 cut(s) 510
AfaI GTAC 2 cut(s) 282, 487
AfiI CCNNNNNNNGG 1 cut(s) 214
AflII CTTAAG 2 cut(s) 164, 563
AgsI TTSAA 2 cut(s) 263, 425
AjnI CCWGG 1 cut(s) 10
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 6 cut(s) 18, 361, 463, 479, 494, 631
AluI AGCT 6 cut(s) 18, 361, 463, 479, 494, 631
Alw21I GWGCWC 2 cut(s) 162, 513
Alw44I GTGCAC 1 cut(s) 158
AlwI GGATC 1 cut(s) 571
AoxI GGCC 3 cut(s) 190, 209, 701
ApaLI GTGCAC 1 cut(s) 158
ApeKI GCWGC 4 cut(s) 15, 494, 533, 668
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
Asp700I GAANNNNTTC 1 cut(s) 258
AspLEI GCGC 2 cut(s) 100, 657
AspS9I GGNCC 4 cut(s) 286, 409, 676, 702
AsuC2I CCSGG 1 cut(s) 194
AsuII TTCGAA 3 cut(s) 48, 269, 297
AvaII GGWCC 3 cut(s) 286, 409, 676
BaeGI GKGCMC 1 cut(s) 162
BarI GAAGNNNNNNTAC 2 cut(s) 483, 515
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 2 cut(s) 162, 513
BbvI GCAGC 4 cut(s) 27, 481, 545, 680
BccI CCATC 2 cut(s) 16, 208
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 1 cut(s) 12
BcnI CCSGG 1 cut(s) 194
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 2 cut(s) 125, 383
BfoI RGCGCY 1 cut(s) 101
BfrI CTTAAG 2 cut(s) 164, 563
BisI GCNGC 4 cut(s) 16, 495, 534, 669
BlsI GCNGC 4 cut(s) 17, 496, 535, 670
Bme1390I CCNGG 2 cut(s) 12, 194
Bme18I GGWCC 3 cut(s) 286, 409, 676
BmgT120I GGNCC 4 cut(s) 286, 409, 676, 702
BmiI GGNNCC 3 cut(s) 287, 288, 411
BmrFI CCNGG 2 cut(s) 12, 194
BmsI GCATC 1 cut(s) 629
BpiI GAAGAC 1 cut(s) 60
Bpu10I CCTNAGC 1 cut(s) 480
Bpu14I TTCGAA 3 cut(s) 48, 269, 297
BpuEI CTTGAG 1 cut(s) 599
BpuMI CCSGG 1 cut(s) 194
BsaWI WCCGGW 1 cut(s) 327
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse118I RCCGGY 1 cut(s) 207
BseBI CCWGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 3 cut(s) 63, 498, 564
BseRI GAGGAG 4 cut(s) 95, 98, 368, 371
BseSI GKGCMC 1 cut(s) 162
BseX3I CGGCCG 1 cut(s) 209
BseXI GCAGC 4 cut(s) 27, 481, 545, 680
Bsh1285I CGRYCG 1 cut(s) 212
BshFI GGCC 3 cut(s) 192, 211, 703
BsiEI CGRYCG 1 cut(s) 212
BsiHKAI GWGCWC 2 cut(s) 162, 513
BsiSI CCGG 3 cut(s) 193, 208, 328
BslFI GGGAC 2 cut(s) 224, 299
BslI CCNNNNNNNGG 1 cut(s) 214
BsmFI GGGAC 2 cut(s) 224, 299
BsmI GAATGC 2 cut(s) 33, 670
BsnI GGCC 3 cut(s) 192, 211, 703
Bsp119I TTCGAA 3 cut(s) 48, 269, 297
Bsp1286I GDGCHC 2 cut(s) 162, 513
Bsp143I GATC 1 cut(s) 576
BspACI CCGC 1 cut(s) 697
BspANI GGCC 3 cut(s) 192, 211, 703
BspCNI CTCAG 3 cut(s) 64, 499, 565
BspLI GGNNCC 3 cut(s) 287, 288, 411
BspMAI CTGCAG 1 cut(s) 129
BspPI GGATC 1 cut(s) 571
BspT104I TTCGAA 3 cut(s) 48, 269, 297
BspTI CTTAAG 2 cut(s) 164, 563
BsrFI RCCGGY 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 207
BssMI GATC 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 12
Bst6I CTCTTC 1 cut(s) 171
BstAFI CTTAAG 2 cut(s) 164, 563
BstBI TTCGAA 3 cut(s) 48, 269, 297
BstC8I GCNNGC 5 cut(s) 96, 102, 136, 629, 701
BstDEI CTNAG 5 cut(s) 72, 405, 480, 507, 573
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 2 cut(s) 100, 657
BstKTI GATC 1 cut(s) 579
BstMBI GATC 1 cut(s) 576
BstMCI CGRYCG 1 cut(s) 212
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNI CCWGG 1 cut(s) 12
BstNSI RCATGY 1 cut(s) 691
BstSCI CCNGG 2 cut(s) 10, 192
BstSFI CTRYAG 2 cut(s) 125, 383
BstSLI GKGCMC 1 cut(s) 162
BstV1I GCAGC 4 cut(s) 27, 481, 545, 680
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 576
BstYI RGATCY 1 cut(s) 576
BstZI CGGCCG 1 cut(s) 209
BsuRI GGCC 3 cut(s) 192, 211, 703
BtsCI GGATG 1 cut(s) 82
Cac8I GCNNGC 5 cut(s) 96, 102, 136, 629, 701
CfoI GCGC 2 cut(s) 100, 657
Cfr10I RCCGGY 1 cut(s) 207
Cfr13I GGNCC 4 cut(s) 286, 409, 676, 702
Csp6I GTAC 2 cut(s) 281, 486
CviAII CATG 2 cut(s) 595, 688
CviQI GTAC 2 cut(s) 281, 486
DdeI CTNAG 5 cut(s) 72, 405, 480, 507, 573
DpnI GATC 1 cut(s) 578
DpnII GATC 1 cut(s) 576
EaeI YGGCCR 2 cut(s) 190, 209
EagI CGGCCG 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
EclXI CGGCCG 1 cut(s) 209
Eco47I GGWCC 3 cut(s) 286, 409, 676
Eco52I CGGCCG 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 510
EcoO109I RGGNCCY 2 cut(s) 286, 409
EcoRII CCWGG 1 cut(s) 10
FaeI CATG 2 cut(s) 598, 691
FaiI YATR 6 cut(s) 307, 443, 596, 606, 689, 694
FalI AAGNNNNNCTT 2 cut(s) 539, 571
FaqI GGGAC 2 cut(s) 224, 299
FatI CATG 2 cut(s) 594, 687
Fnu4HI GCNGC 4 cut(s) 16, 495, 534, 669
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 4 cut(s) 16, 495, 534, 669
FspBI CTAG 1 cut(s) 243
GlaI GCGC 2 cut(s) 99, 656
GluI GCNGC 4 cut(s) 16, 495, 534, 669
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 3 cut(s) 192, 211, 703
HapII CCGG 3 cut(s) 193, 208, 328
HhaI GCGC 2 cut(s) 100, 657
Hin1II CATG 2 cut(s) 598, 691
Hin6I GCGC 2 cut(s) 98, 655
HinP1I GCGC 2 cut(s) 98, 655
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 4 cut(s) 59, 299, 473, 591
HpaII CCGG 3 cut(s) 193, 208, 328
Hpy166II GTNNAC 2 cut(s) 160, 325
Hpy188I TCNGA 4 cut(s) 73, 472, 574, 581
Hpy188III TCNNGA 2 cut(s) 251, 397
Hpy8I GTNNAC 2 cut(s) 160, 325
Hpy99I CGWCG 1 cut(s) 710
HpyAV CCTTC 5 cut(s) 124, 178, 536, 649, 667
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 6 cut(s) 104, 127, 160, 228, 497, 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 5 cut(s) 72, 405, 480, 507, 573
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 2 cut(s) 598, 691
HspAI GCGC 2 cut(s) 98, 655
KflI GGGWCCC 1 cut(s) 286
Kzo9I GATC 1 cut(s) 576
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 4 cut(s) 27, 481, 545, 680
LweI GCATC 1 cut(s) 629
MaeI CTAG 1 cut(s) 243
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 3 cut(s) 109, 147, 220
MalI GATC 1 cut(s) 578
MboI GATC 1 cut(s) 576
MboII GAAGA 8 cut(s) 54, 60, 62, 188, 193, 343, 437, 673
MflI RGATCY 1 cut(s) 576
MhlI GDGCHC 2 cut(s) 162, 513
MlyI GAGTC 1 cut(s) 585
MnlI CCTC 7 cut(s) 67, 73, 76, 211, 346, 349, 370
MroXI GAANNNNTTC 1 cut(s) 258
MseI TTAA 3 cut(s) 5, 165, 564
MspCI CTTAAG 2 cut(s) 164, 563
MspI CCGG 3 cut(s) 193, 208, 328
MspR9I CCNGG 2 cut(s) 12, 194
Mva1269I GAATGC 2 cut(s) 33, 670
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 166
NciI CCSGG 1 cut(s) 194
NdeII GATC 1 cut(s) 576
NlaIII CATG 2 cut(s) 598, 691
NlaIV GGNNCC 3 cut(s) 287, 288, 411
NmuCI GTSAC 2 cut(s) 109, 147
NspI RCATGY 1 cut(s) 691
NspV TTCGAA 3 cut(s) 48, 269, 297
PcsI WCGNNNNNNNCGW 1 cut(s) 289
PctI GAATGC 2 cut(s) 33, 670
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 3 cut(s) 59, 299, 473
PkrI GCNGC 4 cut(s) 17, 496, 535, 670
PleI GAGTC 1 cut(s) 585
PpsI GAGTC 1 cut(s) 585
PpuMI RGGWCCY 2 cut(s) 286, 409
Psp5II RGGWCCY 2 cut(s) 286, 409
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 3 cut(s) 287, 288, 411
PspPI GGNCC 4 cut(s) 286, 409, 676, 702
PspPPI RGGWCCY 2 cut(s) 286, 409
PstI CTGCAG 1 cut(s) 129
PsuI RGATCY 1 cut(s) 576
RsaI GTAC 2 cut(s) 282, 487
RsaNI GTAC 2 cut(s) 281, 486
SaqAI TTAA 3 cut(s) 5, 165, 564
SatI GCNGC 4 cut(s) 16, 495, 534, 669
Sau3AI GATC 1 cut(s) 576
Sau96I GGNCC 4 cut(s) 286, 409, 676, 702
SchI GAGTC 1 cut(s) 585
ScrFI CCNGG 2 cut(s) 12, 194
SduI GDGCHC 2 cut(s) 162, 513
SfaNI GCATC 1 cut(s) 629
SfcI CTRYAG 2 cut(s) 125, 383
SfuI TTCGAA 3 cut(s) 48, 269, 297
SinI GGWCC 3 cut(s) 286, 409, 676
SmlI CTYRAG 3 cut(s) 164, 563, 614
SmoI CTYRAG 3 cut(s) 164, 563, 614
SsiI CCGC 1 cut(s) 697
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 2 cut(s) 10, 192
TaiI ACGT 1 cut(s) 295
TaqI TCGA 8 cut(s) 20, 48, 140, 250, 269, 297, 633, 714
TfiI GAWTC 3 cut(s) 59, 299, 473
Tru1I TTAA 3 cut(s) 5, 165, 564
Tru9I TTAA 3 cut(s) 5, 165, 564
TseFI GTSAC 2 cut(s) 109, 147
TseI GCWGC 4 cut(s) 15, 494, 533, 668
Tsp45I GTSAC 2 cut(s) 109, 147
TspDTI ATGAA 1 cut(s) 631
Vha464I CTTAAG 2 cut(s) 164, 563
VneI GTGCAC 1 cut(s) 158
VpaK11BI GGWCC 3 cut(s) 286, 409, 676
XceI RCATGY 1 cut(s) 691
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.