Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007303

Physical Location & Seq

Genomic Coordinates Forward (+)

15003942 .. 15006158

Gene Structure 2217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G125000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAAGAAACCTCGAGGCACAATCTCCACATCAAGCAAAATAAAGTTCGAAGAATCCGAATCTTCGTCTTCATCCGAAGATGAGAAGGAGATAGAGCAGGAGCTCGCAGATGTGACATTTGGAGAACTGCAAAAGGCACGCTCAAATGGGTCACATTTAGTGCACCCAAAGCCCAAAGAAGAGAAGAAGGGTGGCCGGGCAAACAAGAACCGGCCAATGGAGGTTGGTTGCGAGAAGCCTGTTACAAGATTTCGAGAGATCATTCAAGGTTCGAAAAAGGTGGTACGTGACCCACGTTTTGAATCTTTATGTGGAACACTGGATGTTGACGGGTTTAGGAAGAGATATGACTTTCTATTTGCAAACGAGCTTCCTGCCGAGAGAGGGGAACTGCAGAAGCAAGTGAAGAAATCCAAGGACCCAGAAGTCATTGAAGAACTAAAGAAACGCATATCTTGGATCATAATTTTCTTCATTGTTGTGTCTTTTCAGGATAAACAGCTCAAATCTGAGTCAGCCAAGCGCACTGTAGCTGCAATACTGGCCGAGCACAAGCAAAAAGAGAGAAAAGCAGCAAAGCAAGGGAAACAACCCTTTTTTCTTAAGAAATCTGAGATCCGAAAGAAACGACTTATAGAAAAGTATAAACAACTCAAGGGATCGAGCAAGCTTGAAGCCTTCATCGAGAAAAGGCGCAGGAAGAATGCTGCAAAGGACCACATATACATGCCATACCGTAGGCCTGACAACACTGAGCAACAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRP36

Protein Analysis

256

Amino Acids

29.68

Weight (kDa)

9.88

Isoelectric Point (pI)

64.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12650 AT1G12650 AT1G12650 AT1G12650
fragaria_vesca	FvH4_3g24970 FvH4_7g07500
malus_domestica	MD03G1146200.v1.1 MD11G1165500.v1.1
prunus_persica	Prupe.6G131000_v2.0.a1 Prupe.8G125000_v2.0.a1
pyrus_communis	pycom03g10060
rosa_chinensis	RchiOBHm_Chr5g0045251
rosa_laevigata	RLG00000034349
rosa_multiflora	Rmu_sc0001773.1_g000021 Rmu_sc0001773.1_g000022 Rmu_sc0007992.1_g000004
rosa_roxburghii	Rroxscaffold_1G00035800
rosa_rugosa	Rorug05G0222100
rosa_samantha	Rh5AG303200 Rh5BG311800 Rh5CG337900 Rh5DG321900
rosa_wichuraiana	Rw5G028150 Rw5G028400 Rw5G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	425
AbsI	CCTCGAGG	1 cut(s)	12
AclWI	GGATC	3 cut(s)	467, 610, 667
AcoI	YGGCCR	3 cut(s)	193, 212, 543
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	2 cut(s)	217, 384
AflII	CTTAAG	1 cut(s)	602
AgsI	TTSAA	4 cut(s)	266, 302, 434, 674
AluBI	AGCT	5 cut(s)	103, 370, 502, 533, 670
AluI	AGCT	5 cut(s)	103, 370, 502, 533, 670
Alw21I	GWGCWC	3 cut(s)	105, 165, 552
Alw44I	GTGCAC	1 cut(s)	161
AlwI	GGATC	3 cut(s)	467, 610, 667
Ama87I	CYCGRG	1 cut(s)	12
AoxI	GGCC	4 cut(s)	193, 212, 543, 740
ApaLI	GTGCAC	1 cut(s)	161
ApeKI	GCWGC	3 cut(s)	533, 572, 707
ArsI	GACNNNNNNTTYG	4 cut(s)	281, 313, 341, 373
AspLEI	GCGC	2 cut(s)	525, 696
AspS9I	GGNCC	2 cut(s)	418, 715
AsuC2I	CCSGG	1 cut(s)	197
AsuII	TTCGAA	2 cut(s)	48, 272
AvaI	CYCGRG	1 cut(s)	12
AvaII	GGWCC	2 cut(s)	418, 715
BaeGI	GKGCMC	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	3 cut(s)	105, 165, 552
BbvI	GCAGC	3 cut(s)	520, 584, 694
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BcnI	CCSGG	1 cut(s)	197
BfmI	CTRYAG	2 cut(s)	392, 528
BfrI	CTTAAG	1 cut(s)	602
BisI	GCNGC	3 cut(s)	534, 573, 708
BlsI	GCNGC	3 cut(s)	535, 574, 709
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	2 cut(s)	418, 715
BmeT110I	CYCGRG	1 cut(s)	12
BmgT120I	GGNCC	2 cut(s)	418, 715
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	60
Bpu14I	TTCGAA	2 cut(s)	48, 272
BpuEI	CTTGAG	1 cut(s)	638
BpuMI	CCSGG	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 384
Bse118I	RCCGGY	1 cut(s)	210
Bse1I	ACTGG	2 cut(s)	324, 546
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	2 cut(s)	71, 328
BseLI	CCNNNNNNNGG	2 cut(s)	217, 384
BseMII	CTCAG	3 cut(s)	501, 603, 744
BseNI	ACTGG	2 cut(s)	324, 546
BseSI	GKGCMC	1 cut(s)	165
BseXI	GCAGC	3 cut(s)	520, 584, 694
BshFI	GGCC	4 cut(s)	195, 214, 545, 742
BsiHKAI	GWGCWC	3 cut(s)	105, 165, 552
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	2 cut(s)	196, 211
BslI	CCNNNNNNNGG	2 cut(s)	217, 384
BsmI	GAATGC	1 cut(s)	709
BsnI	GGCC	4 cut(s)	195, 214, 545, 742
BsoBI	CYCGRG	1 cut(s)	12
Bsp119I	TTCGAA	2 cut(s)	48, 272
Bsp1286I	GDGCHC	3 cut(s)	105, 165, 552
Bsp143I	GATC	4 cut(s)	258, 459, 615, 659
BspANI	GGCC	4 cut(s)	195, 214, 545, 742
BspCNI	CTCAG	3 cut(s)	502, 604, 745
BspLI	GGNNCC	1 cut(s)	420
BspMAI	CTGCAG	1 cut(s)	396
BspPI	GGATC	3 cut(s)	467, 610, 667
BspT104I	TTCGAA	2 cut(s)	48, 272
BspTI	CTTAAG	1 cut(s)	602
BsrFI	RCCGGY	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	324, 546
BssAI	RCCGGY	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	4 cut(s)	258, 459, 615, 659
BssT1I	CCWWGG	1 cut(s)	414
Bst4CI	ACNGT	2 cut(s)	529, 737
Bst6I	CTCTTC	2 cut(s)	174, 335
BstAFI	CTTAAG	1 cut(s)	602
BstBAI	YACGTR	1 cut(s)	287
BstBI	TTCGAA	2 cut(s)	48, 272
BstC8I	GCNNGC	3 cut(s)	105, 139, 668
BstDEI	CTNAG	3 cut(s)	510, 612, 753
BstF5I	GGATG	2 cut(s)	71, 328
BstHHI	GCGC	2 cut(s)	525, 696
BstKTI	GATC	4 cut(s)	261, 462, 618, 662
BstMBI	GATC	4 cut(s)	258, 459, 615, 659
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 542
BstNSI	RCATGY	1 cut(s)	730
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	2 cut(s)	392, 528
BstSLI	GKGCMC	1 cut(s)	165
BstV1I	GCAGC	3 cut(s)	520, 584, 694
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	615
BstYI	RGATCY	1 cut(s)	615
BsuRI	GGCC	4 cut(s)	195, 214, 545, 742
BtsCI	GGATG	2 cut(s)	71, 328
BtsIMutI	CAGTG	3 cut(s)	317, 525, 750
Cac8I	GCNNGC	3 cut(s)	105, 139, 668
CfoI	GCGC	2 cut(s)	525, 696
Cfr10I	RCCGGY	1 cut(s)	210
Cfr13I	GGNCC	2 cut(s)	418, 715
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	1 cut(s)	727
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	3 cut(s)	510, 612, 753
DpnI	GATC	4 cut(s)	260, 461, 617, 661
DpnII	GATC	4 cut(s)	258, 459, 615, 659
DrdI	GACNNNNNNGTC	1 cut(s)	425
DseDI	GACNNNNNNGTC	1 cut(s)	425
EaeI	YGGCCR	3 cut(s)	193, 212, 543
Eam1104I	CTCTTC	2 cut(s)	174, 335
EarI	CTCTTC	2 cut(s)	174, 335
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	414
Eco147I	AGGCCT	1 cut(s)	742
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	2 cut(s)	418, 715
Eco53kI	GAGCTC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	1 cut(s)	730
FatI	CATG	1 cut(s)	726
Fnu4HI	GCNGC	3 cut(s)	534, 573, 708
FokI	GGATG	2 cut(s)	58, 335
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	3 cut(s)	534, 573, 708
GlaI	GCGC	2 cut(s)	524, 695
GluI	GCNGC	3 cut(s)	534, 573, 708
HaeIII	GGCC	4 cut(s)	195, 214, 545, 742
HapII	CCGG	2 cut(s)	196, 211
HhaI	GCGC	2 cut(s)	525, 696
Hin1II	CATG	1 cut(s)	730
Hin6I	GCGC	2 cut(s)	523, 694
HinP1I	GCGC	2 cut(s)	523, 694
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	4 cut(s)	53, 59, 302, 512
HpaII	CCGG	2 cut(s)	196, 211
Hpy166II	GTNNAC	2 cut(s)	163, 328
Hpy188I	TCNGA	5 cut(s)	58, 76, 511, 613, 620
Hpy188III	TCNNGA	3 cut(s)	254, 491, 685
Hpy8I	GTNNAC	2 cut(s)	163, 328
HpyAV	CCTTC	3 cut(s)	79, 181, 688
HpyCH4III	ACNGT	2 cut(s)	529, 737
HpyCH4IV	ACGT	2 cut(s)	286, 295
HpyCH4V	TGCA	6 cut(s)	130, 163, 362, 394, 536, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 542
HpyF3I	CTNAG	3 cut(s)	510, 612, 753
HpySE526I	ACGT	2 cut(s)	286, 295
Hsp92II	CATG	1 cut(s)	730
HspAI	GCGC	2 cut(s)	523, 694
Kzo9I	GATC	4 cut(s)	258, 459, 615, 659
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	3 cut(s)	520, 584, 694
MaeII	ACGT	2 cut(s)	286, 295
MaeIII	GTNAC	4 cut(s)	112, 150, 241, 287
MalI	GATC	4 cut(s)	260, 461, 617, 661
MboI	GATC	4 cut(s)	258, 459, 615, 659
MflI	RGATCY	1 cut(s)	615
MhlI	GDGCHC	3 cut(s)	105, 165, 552
MluCI	AATT	1 cut(s)	465
MlyI	GAGTC	1 cut(s)	521
MnlI	CCTC	4 cut(s)	8, 21, 214, 377
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	2 cut(s)	479, 725
MspCI	CTTAAG	1 cut(s)	602
MspI	CCGG	2 cut(s)	196, 211
MspR9I	CCNGG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	709
MwoI	GCNNNNNNNGC	2 cut(s)	169, 542
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	4 cut(s)	258, 459, 615, 659
NlaIII	CATG	1 cut(s)	730
NlaIV	GGNNCC	1 cut(s)	420
NmeAIII	GCCGAG	2 cut(s)	403, 571
NmuCI	GTSAC	3 cut(s)	112, 150, 287
NspI	RCATGY	1 cut(s)	730
NspV	TTCGAA	2 cut(s)	48, 272
PaeR7I	CTCGAG	1 cut(s)	12
PceI	AGGCCT	1 cut(s)	742
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 292
PctI	GAATGC	1 cut(s)	709
PfeI	GAWTC	3 cut(s)	53, 59, 302
PkrI	GCNGC	3 cut(s)	535, 574, 709
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
Ppu21I	YACGTR	1 cut(s)	287
PpuMI	RGGWCCY	1 cut(s)	418
Psp124BI	GAGCTC	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	418
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	2 cut(s)	418, 715
PspPPI	RGGWCCY	1 cut(s)	418
PspXI	VCTCGAGB	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	396
PsuI	RGATCY	1 cut(s)	615
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
RseI	CAYNNNNRTG	2 cut(s)	479, 725
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	3 cut(s)	534, 573, 708
Sau3AI	GATC	4 cut(s)	258, 459, 615, 659
Sau96I	GGNCC	2 cut(s)	418, 715
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	3 cut(s)	105, 165, 552
SfcI	CTRYAG	2 cut(s)	392, 528
Sfr274I	CTCGAG	1 cut(s)	12
SfuI	TTCGAA	2 cut(s)	48, 272
SinI	GGWCC	2 cut(s)	418, 715
SlaI	CTCGAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	2 cut(s)	479, 725
SmlI	CTYRAG	3 cut(s)	12, 602, 653
SmoI	CTYRAG	3 cut(s)	12, 602, 653
Sse9I	AATT	1 cut(s)	465
SseBI	AGGCCT	1 cut(s)	742
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	742
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	2 cut(s)	529, 737
TaiI	ACGT	2 cut(s)	289, 298
TaqI	TCGA	6 cut(s)	13, 48, 253, 272, 662, 684
TasI	AATT	1 cut(s)	465
TfiI	GAWTC	3 cut(s)	53, 59, 302
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	3 cut(s)	324, 532, 757
TseFI	GTSAC	3 cut(s)	112, 150, 287
TseI	GCWGC	3 cut(s)	533, 572, 707
Tsp45I	GTSAC	3 cut(s)	112, 150, 287
TspDTI	ATGAA	4 cut(s)	17, 60, 463, 670
TspRI	CASTG	3 cut(s)	324, 532, 757
Vha464I	CTTAAG	1 cut(s)	602
VneI	GTGCAC	1 cut(s)	161
VpaK11BI	GGWCC	2 cut(s)	418, 715
XceI	RCATGY	1 cut(s)	730
XhoI	CTCGAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.