Rw5G028440

Ribosomal RNA processing protein 36 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0007303
Physical Location & Seq
Forward (+)
43144766 .. 43147965
3200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G028440.1

Sequence Viewer

Length: 735 bp
ATGGAGCAAGCTCGCAGCACAATCGGAAAACCAGTGAAGACGAAGTTCGAAGACCCCGAATCATCACCTTCCTCTTCTTCCGAAGATGAGGAGGAGATAGAGGAGGAGCTTGCGGATGTGACATTCGGGGATTTGCAGAGGGCGCGCTCCAATGGGTTGCATGTAGTGTTGCCGAAGCCCAAAGAAGAGAAGAAGGGTGGCCGAGCAAACAAGAACCGGCCAATGGAGGTGAGCTGCAAGAAGCCTGTCAGTAGATTTAGAGAGGTCATTCAGGCTCCGAAAAAGGTGGTACGTGATCCGCGTTTTGAATCTTTATGCGGAACTCTGAATGTTGATGGGTTTAGGAAGAGATATGATTTTTTGTTTTCAAACGAGCTTCCTGCTGAAAAGCAGGATCTAAAGAAACAATTGAAAAAATCGAAGGATCCAGAAGTCATTGAAGATCTAAAGCAGCACATATCTTGGATTGATAAACAGCTAAAATCTGATTCATCTAAGCGCACTGAAGCTGAAATTCTAGCTCAGCACAAGAAAAAAGAGAGAGAAAAGGCAAAGCAAGGAAAACAACCCTTCTTTATCAAGAAATCTGAGATCCGAAAGAAACGACTTGTTGAAAAGTACAAAAATCTCAAGGGATCTGGCAAGCTTGAAGCCTTCTTGGAGCAAAGGCGAAAGAAGAATGCTACAAAGGACCACAGATACATGCCGTACCGTAGACCTGACAACATTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRP36

Protein Analysis

244

Amino Acids

28.49

Weight (kDa)

9.72

Isoelectric Point (pI)

72.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRP36 PF06102 68 - 233 1.9e-53 rRNA biogenesis protein RRP36
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 715
AccII CGCG 2 cut(s) 145, 301
AciI CCGC 3 cut(s) 113, 299, 318
AclWI GGATC 6 cut(s) 290, 402, 419, 432, 586, 643
AcoI YGGCCR 2 cut(s) 199, 218
AcsI RAATTY 1 cut(s) 513
AcuI CTGAAG 1 cut(s) 525
AfaI GTAC 3 cut(s) 291, 620, 710
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 6 cut(s) 308, 369, 412, 440, 614, 650
AluBI AGCT 8 cut(s) 11, 109, 234, 376, 478, 509, 521, 646
AluI AGCT 8 cut(s) 11, 109, 234, 376, 478, 509, 521, 646
AlwI GGATC 6 cut(s) 290, 402, 419, 432, 586, 643
AoxI GGCC 2 cut(s) 199, 218
ApeKI GCWGC 3 cut(s) 15, 234, 451
ApoI RAATTY 1 cut(s) 513
AspLEI GCGC 3 cut(s) 145, 147, 501
AspS9I GGNCC 1 cut(s) 691
AsuHPI GGTGA 2 cut(s) 57, 241
AsuII TTCGAA 1 cut(s) 48
AvaII GGWCC 1 cut(s) 691
BamHI GGATCC 1 cut(s) 424
BbsI GAAGAC 2 cut(s) 44, 57
BbvI GCAGC 3 cut(s) 27, 221, 463
BccI CCATC 1 cut(s) 329
BceAI ACGGC 1 cut(s) 691
BcgI CGANNNNNNTGC 4 cut(s) 4, 38, 362, 396
BfaI CTAG 1 cut(s) 518
BglII AGATCT 1 cut(s) 442
BisI GCNGC 3 cut(s) 16, 235, 452
BlpI GCTNAGC 1 cut(s) 522
BlsI GCNGC 3 cut(s) 17, 236, 453
Bme18I GGWCC 1 cut(s) 691
BmgT120I GGNCC 1 cut(s) 691
BmiI GGNNCC 2 cut(s) 276, 426
BpiI GAAGAC 2 cut(s) 44, 57
Bpu1102I GCTNAGC 1 cut(s) 522
Bpu14I TTCGAA 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 614
BsaAI YACGTR 1 cut(s) 293
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse118I RCCGGY 1 cut(s) 216
Bse1I ACTGG 1 cut(s) 32
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMII CTCAG 2 cut(s) 536, 579
BseNI ACTGG 1 cut(s) 32
BsePI GCGCGC 1 cut(s) 143
BseRI GAGGAG 4 cut(s) 104, 107, 116, 119
BseXI GCAGC 3 cut(s) 27, 221, 463
Bsh1236I CGCG 2 cut(s) 145, 301
BshFI GGCC 2 cut(s) 201, 220
BsiSI CCGG 1 cut(s) 217
BslI CCNNNNNNNGG 1 cut(s) 223
BsmI GAATGC 1 cut(s) 685
BsnI GGCC 2 cut(s) 201, 220
Bsp119I TTCGAA 1 cut(s) 48
Bsp143I GATC 6 cut(s) 295, 394, 424, 442, 591, 635
Bsp1720I GCTNAGC 1 cut(s) 522
BspACI CCGC 3 cut(s) 113, 299, 318
BspANI GGCC 2 cut(s) 201, 220
BspCNI CTCAG 2 cut(s) 535, 580
BspFNI CGCG 2 cut(s) 145, 301
BspLI GGNNCC 2 cut(s) 276, 426
BspPI GGATC 6 cut(s) 290, 402, 419, 432, 586, 643
BspT104I TTCGAA 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 216
BsrI ACTGG 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 216
BssHII GCGCGC 1 cut(s) 143
BssMI GATC 6 cut(s) 295, 394, 424, 442, 591, 635
Bst4CI ACNGT 1 cut(s) 713
Bst6I CTCTTC 3 cut(s) 79, 180, 341
BstBAI YACGTR 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 48
BstC8I GCNNGC 5 cut(s) 9, 13, 111, 145, 644
BstDEI CTNAG 3 cut(s) 495, 522, 588
BstF5I GGATG 1 cut(s) 121
BstFNI CGCG 2 cut(s) 145, 301
BstHHI GCGC 3 cut(s) 145, 147, 501
BstKTI GATC 6 cut(s) 298, 397, 427, 445, 594, 638
BstMBI GATC 6 cut(s) 295, 394, 424, 442, 591, 635
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNSI RCATGY 2 cut(s) 164, 706
BstUI CGCG 2 cut(s) 145, 301
BstV1I GCAGC 3 cut(s) 27, 221, 463
BstV2I GAAGAC 2 cut(s) 44, 57
BstX2I RGATCY 5 cut(s) 394, 424, 442, 591, 635
BstYI RGATCY 5 cut(s) 394, 424, 442, 591, 635
BsuRI GGCC 2 cut(s) 201, 220
BtsCI GGATG 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 39, 501
Cac8I GCNNGC 5 cut(s) 9, 13, 111, 145, 644
CfoI GCGC 3 cut(s) 145, 147, 501
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 691
Csp6I GTAC 3 cut(s) 290, 619, 709
CviAII CATG 2 cut(s) 161, 703
CviQI GTAC 3 cut(s) 290, 619, 709
DdeI CTNAG 3 cut(s) 495, 522, 588
DpnI GATC 6 cut(s) 297, 396, 426, 444, 593, 637
DpnII GATC 6 cut(s) 295, 394, 424, 442, 591, 635
EaeI YGGCCR 2 cut(s) 199, 218
Eam1104I CTCTTC 3 cut(s) 79, 180, 341
EarI CTCTTC 3 cut(s) 79, 180, 341
Eco47I GGWCC 1 cut(s) 691
Eco57I CTGAAG 1 cut(s) 525
FaeI CATG 2 cut(s) 164, 706
FaiI YATR 5 cut(s) 162, 316, 354, 458, 704
FatI CATG 2 cut(s) 160, 702
FblI GTMKAC 1 cut(s) 715
Fnu4HI GCNGC 3 cut(s) 16, 235, 452
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 3 cut(s) 16, 235, 452
FspBI CTAG 1 cut(s) 518
GlaI GCGC 3 cut(s) 144, 146, 500
GluI GCNGC 3 cut(s) 16, 235, 452
HaeIII GGCC 2 cut(s) 201, 220
HapII CCGG 1 cut(s) 217
HhaI GCGC 3 cut(s) 145, 147, 501
Hin1II CATG 2 cut(s) 164, 706
Hin6I GCGC 3 cut(s) 143, 145, 499
HinP1I GCGC 3 cut(s) 143, 145, 499
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 3 cut(s) 59, 308, 488
HpaII CCGG 1 cut(s) 217
HphI GGTGA 2 cut(s) 57, 241
Hpy166II GTNNAC 1 cut(s) 716
Hpy188I TCNGA 7 cut(s) 26, 82, 279, 327, 487, 589, 596
Hpy188III TCNNGA 2 cut(s) 428, 580
Hpy8I GTNNAC 1 cut(s) 716
HpyAV CCTTC 5 cut(s) 78, 187, 415, 580, 664
HpyCH4III ACNGT 1 cut(s) 713
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 3 cut(s) 136, 160, 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 3 cut(s) 495, 522, 588
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 2 cut(s) 164, 706
HspAI GCGC 3 cut(s) 143, 145, 499
Kzo9I GATC 6 cut(s) 295, 394, 424, 442, 591, 635
LmnI GCTCC 5 cut(s) 4, 106, 152, 280, 661
LpnPI CCDG 8 cut(s) 45, 230, 257, 258, 377, 393, 441, 624
Lsp1109I GCAGC 3 cut(s) 27, 221, 463
MaeI CTAG 1 cut(s) 518
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 118
MalI GATC 6 cut(s) 297, 396, 426, 444, 593, 637
MboI GATC 6 cut(s) 295, 394, 424, 442, 591, 635
MfeI CAATTG 1 cut(s) 407
MflI RGATCY 5 cut(s) 394, 424, 442, 591, 635
MluCI AATT 2 cut(s) 407, 513
MnlI CCTC 8 cut(s) 82, 82, 85, 94, 97, 132, 220, 256
MspI CCGG 1 cut(s) 217
MunI CAATTG 1 cut(s) 407
Mva1269I GAATGC 1 cut(s) 685
MvnI CGCG 2 cut(s) 145, 301
MwoI GCNNNNNNNGC 1 cut(s) 142
NdeII GATC 6 cut(s) 295, 394, 424, 442, 591, 635
NlaIII CATG 2 cut(s) 164, 706
NlaIV GGNNCC 2 cut(s) 276, 426
NmeAIII GCCGAG 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 118
NspI RCATGY 2 cut(s) 164, 706
NspV TTCGAA 1 cut(s) 48
PauI GCGCGC 1 cut(s) 143
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 298
PctI GAATGC 1 cut(s) 685
PfeI GAWTC 3 cut(s) 59, 308, 488
PkrI GCNGC 3 cut(s) 17, 236, 453
Ppu21I YACGTR 1 cut(s) 293
PspN4I GGNNCC 2 cut(s) 276, 426
PspPI GGNCC 1 cut(s) 691
PsuI RGATCY 5 cut(s) 394, 424, 442, 591, 635
PteI GCGCGC 1 cut(s) 143
RsaI GTAC 3 cut(s) 291, 620, 710
RsaNI GTAC 3 cut(s) 290, 619, 709
SatI GCNGC 3 cut(s) 16, 235, 452
Sau3AI GATC 6 cut(s) 295, 394, 424, 442, 591, 635
Sau96I GGNCC 1 cut(s) 691
SfuI TTCGAA 1 cut(s) 48
SinI GGWCC 1 cut(s) 691
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 2 cut(s) 407, 513
SsiI CCGC 3 cut(s) 113, 299, 318
SspMI CTAG 1 cut(s) 518
TaaI ACNGT 1 cut(s) 713
TaiI ACGT 1 cut(s) 295
TaqI TCGA 2 cut(s) 48, 419
TasI AATT 2 cut(s) 407, 513
TatI WGTACW 1 cut(s) 618
TfiI GAWTC 3 cut(s) 59, 308, 488
TscAI CASTG 2 cut(s) 39, 508
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 3 cut(s) 15, 234, 451
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 480
TspRI CASTG 2 cut(s) 39, 508
VpaK11BI GGWCC 1 cut(s) 691
XapI RAATTY 1 cut(s) 513
XceI RCATGY 2 cut(s) 164, 706
XmiI GTMKAC 1 cut(s) 715
XspI CTAG 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.