Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007303

Physical Location & Seq

Genomic Coordinates Reverse (-)

17440645 .. 17443512

Gene Structure 2868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1165500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGTAAAACCTGGCAGCTCAATGGGAATGCCAAGCAAAATAAAGTTGGAAGAACCCGAATCTTCGTCTTCTTCTGAAGATCTAAGTGGAGGAAATGGAGCAGATGTGACATTTGGGGAACTGCAGGAGGTGCGCTCGAACGGGTCACATGTAGTGCACCTTAAGCCTAAAGAAGAGAAGAAGGGTGGTCGGGCGAACAAGAACCGGCCAATGGAGGTTACTTGCACTAAGCCTGTCCCTAGATTTCGAGAGGTTATTCAAGGTTCAAAAAAAGGTGAGATTTTTGTGGTACGCGACCCACGTTTTGAATCTTTATGTGGAGAACTTGATGTTGATCGGAAGAAATATCGCTTTTTATTTGAGGAGGAGCTTCCTGCCGAAAAAGAGGAACTACAGAAGCAAATCAAGAAATCTAAGGATCCAGAAACCATTGAAGAACTAAAGAAACATATCTCTTTGATTGATACACAGCTAAAATCTGAGTCACCTAAGCATACTGAAGCGGCAATACTGACTGAGCACAAGAAAAAAGAGAGAAAAGCAGCAAAGGAAAGGAAGCAACCCTTTTTTCTTAAGAAATGTAATGCCCCTTCTTGCTGCCTCTCCACCTCTGTGCGCATGTTCATCTGTGTCCGGTTCAAACAGTATATACTTCTAGTTAGTACATATACAAGATGCAAGGAAATGAAAATTTTTTGTTCAAAATTTTCTATCACAATTCTAAGGAGCAGCTATAGTAACTGGTATTGGCGGTTCCAGTGCTGGACGTTTCCTTGGTCATGGTTGAGAATCTTGAGATCTGAGATCCGAAAGAAACGACTTGTGGAGAAGTATAAACAACTCAAGGCGTCTGGCAAGCTCGAAACCTTCATTGAAAAAAGGCGCCGGAAGAATGCAGCAAAGGACCACAGATACATGCCATACCGCGGGCCTGACGCAACCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRP36

Protein Analysis

316

Amino Acids

36.84

Weight (kDa)

9.71

Isoelectric Point (pI)

57.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRP36	PF06102	64 - 193	5.3e-32	rRNA biogenesis protein RRP36
RRP36	PF06102	266 - 304	8.1e-07	rRNA biogenesis protein RRP36

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12650 AT1G12650 AT1G12650 AT1G12650
fragaria_vesca	FvH4_3g24970 FvH4_7g07500
malus_domestica	MD03G1146200.v1.1 MD11G1165500.v1.1
prunus_persica	Prupe.6G131000_v2.0.a1 Prupe.8G125000_v2.0.a1
pyrus_communis	pycom03g10060
rosa_chinensis	RchiOBHm_Chr5g0045251
rosa_laevigata	RLG00000034349
rosa_multiflora	Rmu_sc0001773.1_g000021 Rmu_sc0001773.1_g000022 Rmu_sc0007992.1_g000004
rosa_roxburghii	Rroxscaffold_1G00035800
rosa_rugosa	Rorug05G0222100
rosa_samantha	Rh5AG303200 Rh5BG311800 Rh5CG337900 Rh5DG321900
rosa_wichuraiana	Rw5G028150 Rw5G028400 Rw5G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	617
AccB1I	GGYRCC	1 cut(s)	882
AccII	CGCG	2 cut(s)	294, 927
AciI	CCGC	4 cut(s)	503, 751, 925, 927
AclWI	GGATC	3 cut(s)	413, 426, 799
AcoI	YGGCCR	1 cut(s)	206
AcsI	RAATTY	2 cut(s)	690, 704
AcuI	CTGAAG	2 cut(s)	96, 519
AcyI	GRCGYC	2 cut(s)	848, 883
AfaI	GTAC	2 cut(s)	291, 664
AfiI	CCNNNNNNNGG	2 cut(s)	211, 926
AflII	CTTAAG	2 cut(s)	161, 572
AflIII	ACRYGT	1 cut(s)	148
AgsI	TTSAA	7 cut(s)	260, 267, 308, 434, 640, 702, 875
AjnI	CCWGG	1 cut(s)	10
AleI	CACNNNNGTG	1 cut(s)	611
AluBI	AGCT	5 cut(s)	18, 370, 472, 732, 859
AluI	AGCT	5 cut(s)	18, 370, 472, 732, 859
Alw21I	GWGCWC	2 cut(s)	159, 522
Alw44I	GTGCAC	1 cut(s)	155
AlwI	GGATC	3 cut(s)	413, 426, 799
AoxI	GGCC	2 cut(s)	206, 929
ApaLI	GTGCAC	1 cut(s)	155
ApeKI	GCWGC	5 cut(s)	15, 542, 597, 729, 896
ApoI	RAATTY	2 cut(s)	690, 704
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AspLEI	GCGC	3 cut(s)	135, 618, 885
AspS9I	GGNCC	2 cut(s)	904, 929
AsuHPI	GGTGA	2 cut(s)	287, 477
AvaII	GGWCC	1 cut(s)	904
BaeGI	GKGCMC	1 cut(s)	159
BamHI	GGATCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	882
BarI	GAAGNNNNNNTAC	4 cut(s)	492, 524, 574, 606
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	2 cut(s)	159, 522
BbvI	GCAGC	5 cut(s)	27, 554, 584, 741, 908
BciT130I	CCWGG	1 cut(s)	12
BfaI	CTAG	2 cut(s)	240, 656
BfmI	CTRYAG	3 cut(s)	122, 392, 733
BfoI	RGCGCY	1 cut(s)	886
BfrI	CTTAAG	2 cut(s)	161, 572
BglII	AGATCT	2 cut(s)	79, 797
BisI	GCNGC	6 cut(s)	16, 504, 543, 598, 730, 897
BlsI	GCNGC	6 cut(s)	17, 505, 544, 599, 731, 898
Bme1390I	CCNGG	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	904
BmgT120I	GGNCC	2 cut(s)	904, 929
BmiI	GGNNCC	3 cut(s)	420, 755, 884
BmrFI	CCNGG	1 cut(s)	12
BmsI	GCATC	1 cut(s)	665
BpiI	GAAGAC	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
Bpu10I	CCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	2 cut(s)	814, 827
BsaBI	GATNNNNATC	1 cut(s)	333
BsaHI	GRCGYC	2 cut(s)	848, 883
BsaJI	CCNNGG	2 cut(s)	773, 925
BsaWI	WCCGGW	1 cut(s)	633
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 926
Bse118I	RCCGGY	1 cut(s)	204
Bse1I	ACTGG	2 cut(s)	746, 757
Bse8I	GATNNNNATC	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	773, 925
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	2 cut(s)	211, 926
BseMII	CTCAG	3 cut(s)	471, 507, 792
BseNI	ACTGG	2 cut(s)	746, 757
BseRI	GAGGAG	2 cut(s)	377, 380
BseSI	GKGCMC	1 cut(s)	159
BseXI	GCAGC	5 cut(s)	27, 554, 584, 741, 908
Bsh1236I	CGCG	2 cut(s)	294, 927
BshFI	GGCC	2 cut(s)	208, 931
BshNI	GGYRCC	1 cut(s)	882
BsiHKAI	GWGCWC	2 cut(s)	159, 522
BsiSI	CCGG	3 cut(s)	205, 634, 886
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	211, 926
BsmFI	GGGAC	1 cut(s)	221
BsmI	GAATGC	2 cut(s)	33, 898
BsnI	GGCC	2 cut(s)	208, 931
Bsp1286I	GDGCHC	2 cut(s)	159, 522
Bsp143I	GATC	5 cut(s)	79, 334, 418, 797, 804
BspACI	CCGC	4 cut(s)	503, 751, 925, 927
BspANI	GGCC	2 cut(s)	208, 931
BspCNI	CTCAG	3 cut(s)	472, 508, 793
BspFNI	CGCG	2 cut(s)	294, 927
BspLI	GGNNCC	3 cut(s)	420, 755, 884
BspMAI	CTGCAG	1 cut(s)	126
BspPI	GGATC	3 cut(s)	413, 426, 799
BspT107I	GGYRCC	1 cut(s)	882
BspTI	CTTAAG	2 cut(s)	161, 572
BsrFI	RCCGGY	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	746, 757
BssAI	RCCGGY	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	773, 925
BssMI	GATC	5 cut(s)	79, 334, 418, 797, 804
BssNI	GRCGYC	2 cut(s)	848, 883
BssT1I	CCWWGG	1 cut(s)	773
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	645
Bst6I	CTCTTC	1 cut(s)	168
BstACI	GRCGYC	2 cut(s)	848, 883
BstAFI	CTTAAG	2 cut(s)	161, 572
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	857, 929
BstDEI	CTNAG	8 cut(s)	83, 228, 414, 480, 489, 516, 722, 801
BstDSI	CCRYGG	1 cut(s)	925
BstFNI	CGCG	2 cut(s)	294, 927
BstH2I	RGCGCY	1 cut(s)	886
BstHHI	GCGC	3 cut(s)	135, 618, 885
BstKTI	GATC	5 cut(s)	82, 337, 421, 800, 807
BstMBI	GATC	5 cut(s)	79, 334, 418, 797, 804
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 163
BstNI	CCWGG	1 cut(s)	12
BstNSI	RCATGY	3 cut(s)	152, 622, 919
BstSCI	CCNGG	1 cut(s)	10
BstSFI	CTRYAG	3 cut(s)	122, 392, 733
BstSLI	GKGCMC	1 cut(s)	159
BstUI	CGCG	2 cut(s)	294, 927
BstV1I	GCAGC	5 cut(s)	27, 554, 584, 741, 908
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	4 cut(s)	79, 418, 797, 804
BstYI	RGATCY	4 cut(s)	79, 418, 797, 804
BsuRI	GGCC	2 cut(s)	208, 931
BtgI	CCRYGG	1 cut(s)	925
BtsIMutI	CAGTG	1 cut(s)	764
Cac8I	GCNNGC	2 cut(s)	857, 929
CfoI	GCGC	3 cut(s)	135, 618, 885
Cfr10I	RCCGGY	1 cut(s)	204
Cfr13I	GGNCC	2 cut(s)	904, 929
Cfr42I	CCGCGG	1 cut(s)	928
CseI	GACGC	1 cut(s)	837
Csp6I	GTAC	2 cut(s)	290, 663
CviAII	CATG	4 cut(s)	149, 619, 780, 916
CviJI	RGCY	9 cut(s)	18, 166, 208, 232, 370, 472, 732, 859, 931
CviKI_1	RGCY	9 cut(s)	18, 166, 208, 232, 370, 472, 732, 859, 931
CviQI	GTAC	2 cut(s)	290, 663
DdeI	CTNAG	8 cut(s)	83, 228, 414, 480, 489, 516, 722, 801
DinI	GGCGCC	1 cut(s)	884
DpnI	GATC	5 cut(s)	81, 336, 420, 799, 806
DpnII	GATC	5 cut(s)	79, 334, 418, 797, 804
EaeI	YGGCCR	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	773
Eco47I	GGWCC	1 cut(s)	904
Eco57I	CTGAAG	2 cut(s)	96, 519
EcoRII	CCWGG	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	773
EgeI	GGCGCC	1 cut(s)	884
EheI	GGCGCC	1 cut(s)	884
ErhI	CCWWGG	1 cut(s)	773
FaeI	CATG	4 cut(s)	152, 622, 783, 919
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	4 cut(s)	148, 618, 779, 915
FauI	CCCGC	1 cut(s)	920
Fnu4HI	GCNGC	6 cut(s)	16, 504, 543, 598, 730, 897
Fsp4HI	GCNGC	6 cut(s)	16, 504, 543, 598, 730, 897
FspAI	RTGCGCAY	1 cut(s)	617
FspBI	CTAG	2 cut(s)	240, 656
FspI	TGCGCA	1 cut(s)	617
GlaI	GCGC	3 cut(s)	134, 617, 884
GluI	GCNGC	6 cut(s)	16, 504, 543, 598, 730, 897
HaeII	RGCGCY	1 cut(s)	886
HaeIII	GGCC	2 cut(s)	208, 931
HapII	CCGG	3 cut(s)	205, 634, 886
HgaI	GACGC	1 cut(s)	837
HhaI	GCGC	3 cut(s)	135, 618, 885
Hin1I	GRCGYC	2 cut(s)	848, 883
Hin1II	CATG	4 cut(s)	152, 622, 783, 919
Hin6I	GCGC	3 cut(s)	133, 616, 883
HinP1I	GCGC	3 cut(s)	133, 616, 883
HinfI	GANTC	4 cut(s)	59, 308, 482, 789
HpaII	CCGG	3 cut(s)	205, 634, 886
HphI	GGTGA	2 cut(s)	287, 477
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	5 cut(s)	76, 339, 481, 802, 809
Hpy188III	TCNNGA	4 cut(s)	248, 406, 422, 793
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	3 cut(s)	175, 600, 877
HpyCH4III	ACNGT	1 cut(s)	645
HpyCH4IV	ACGT	2 cut(s)	301, 767
HpyCH4V	TGCA	5 cut(s)	124, 157, 225, 678, 896
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 163
HpyF3I	CTNAG	8 cut(s)	83, 228, 414, 480, 489, 516, 722, 801
HpySE526I	ACGT	2 cut(s)	301, 767
Hsp92I	GRCGYC	2 cut(s)	848, 883
Hsp92II	CATG	4 cut(s)	152, 622, 783, 919
HspAI	GCGC	3 cut(s)	133, 616, 883
KasI	GGCGCC	1 cut(s)	882
KspI	CCGCGG	1 cut(s)	928
Kzo9I	GATC	5 cut(s)	79, 334, 418, 797, 804
LmnI	GCTCC	3 cut(s)	98, 367, 726
Lsp1109I	GCAGC	5 cut(s)	27, 554, 584, 741, 908
LweI	GCATC	1 cut(s)	665
MaeI	CTAG	2 cut(s)	240, 656
MaeII	ACGT	2 cut(s)	301, 767
MaeIII	GTNAC	5 cut(s)	106, 144, 217, 483, 737
MalI	GATC	5 cut(s)	81, 336, 420, 799, 806
MboI	GATC	5 cut(s)	79, 334, 418, 797, 804
MflI	RGATCY	4 cut(s)	79, 418, 797, 804
MhlI	GDGCHC	2 cut(s)	159, 522
MluCI	AATT	3 cut(s)	690, 704, 717
Mly113I	GGCGCC	1 cut(s)	883
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	9 cut(s)	83, 121, 208, 244, 355, 358, 379, 611, 619
MseI	TTAA	2 cut(s)	162, 573
MslI	CAYNNNNRTG	1 cut(s)	611
MspA1I	CMGCKG	1 cut(s)	927
MspCI	CTTAAG	2 cut(s)	161, 572
MspI	CCGG	3 cut(s)	205, 634, 886
MspR9I	CCNGG	1 cut(s)	12
Mva1269I	GAATGC	2 cut(s)	33, 898
MvaI	CCWGG	1 cut(s)	12
MvnI	CGCG	2 cut(s)	294, 927
MwoI	GCNNNNNNNGC	2 cut(s)	130, 163
NarI	GGCGCC	1 cut(s)	883
NdeII	GATC	5 cut(s)	79, 334, 418, 797, 804
NlaIII	CATG	4 cut(s)	152, 622, 783, 919
NlaIV	GGNNCC	3 cut(s)	420, 755, 884
NmuCI	GTSAC	3 cut(s)	106, 144, 483
NsbI	TGCGCA	1 cut(s)	617
NspI	RCATGY	3 cut(s)	152, 622, 919
OliI	CACNNNNGTG	1 cut(s)	611
PciI	ACATGT	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	1 cut(s)	298
PctI	GAATGC	2 cut(s)	33, 898
PfeI	GAWTC	3 cut(s)	59, 308, 789
PkrI	GCNGC	6 cut(s)	17, 505, 544, 599, 731, 898
PleI	GAGTC	1 cut(s)	490
PluTI	GGCGCC	1 cut(s)	886
PpsI	GAGTC	1 cut(s)	490
PscI	ACATGT	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
PspN4I	GGNNCC	3 cut(s)	420, 755, 884
PspPI	GGNCC	2 cut(s)	904, 929
PsrI	GAACNNNNNNTAC	2 cut(s)	737, 769
PstI	CTGCAG	1 cut(s)	126
PsuI	RGATCY	4 cut(s)	79, 418, 797, 804
RsaI	GTAC	2 cut(s)	291, 664
RsaNI	GTAC	2 cut(s)	290, 663
RseI	CAYNNNNRTG	1 cut(s)	611
SacII	CCGCGG	1 cut(s)	928
SaqAI	TTAA	2 cut(s)	162, 573
SatI	GCNGC	6 cut(s)	16, 504, 543, 598, 730, 897
Sau3AI	GATC	5 cut(s)	79, 334, 418, 797, 804
Sau96I	GGNCC	2 cut(s)	904, 929
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	12
SduI	GDGCHC	2 cut(s)	159, 522
SfaNI	GCATC	1 cut(s)	665
SfcI	CTRYAG	3 cut(s)	122, 392, 733
SfoI	GGCGCC	1 cut(s)	884
Sfr303I	CCGCGG	1 cut(s)	928
SgrBI	CCGCGG	1 cut(s)	928
SinI	GGWCC	1 cut(s)	904
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	4 cut(s)	161, 572, 793, 842
SmoI	CTYRAG	4 cut(s)	161, 572, 793, 842
Sse9I	AATT	3 cut(s)	690, 704, 717
SsiI	CCGC	4 cut(s)	503, 751, 925, 927
SspDI	GGCGCC	1 cut(s)	882
SspMI	CTAG	2 cut(s)	240, 656
StyD4I	CCNGG	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	773
TaaI	ACNGT	1 cut(s)	645
TaiI	ACGT	2 cut(s)	304, 770
TaqI	TCGA	3 cut(s)	137, 247, 861
TasI	AATT	3 cut(s)	690, 704, 717
TatI	WGTACW	1 cut(s)	662
TauI	GCSGC	1 cut(s)	506
TfiI	GAWTC	3 cut(s)	59, 308, 789
Tru1I	TTAA	2 cut(s)	162, 573
Tru9I	TTAA	2 cut(s)	162, 573
TscAI	CASTG	1 cut(s)	764
TseFI	GTSAC	3 cut(s)	106, 144, 483
TseI	GCWGC	5 cut(s)	15, 542, 597, 729, 896
Tsp45I	GTSAC	3 cut(s)	106, 144, 483
TspDTI	ATGAA	3 cut(s)	613, 701, 859
TspRI	CASTG	1 cut(s)	764
Vha464I	CTTAAG	2 cut(s)	161, 572
VneI	GTGCAC	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	904
XapI	RAATTY	2 cut(s)	690, 704
XceI	RCATGY	3 cut(s)	152, 622, 919
XspI	CTAG	2 cut(s)	240, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.