Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001773.1

Orthogroup ID

OG0007303

Physical Location & Seq

Genomic Coordinates Reverse (-)

143402 .. 143890

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001773.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atggagcaagctcgcagcacaatcggaaaaccagtgaagacgaagttcgaagaccccgaatcatcaccttcctcttcttccgaagatgaagaggaggaggaggagatagaggaggagcttgcggatgtgacattcggggatttgcagagggcgcgctccaatgggtcgcatgtagtgttgccgaagcccaaagaagagaagaagggtggccgagcaaacaagaaccggccaatggaggttagctgcaagaagcctgtcagtagatttagggaggtcattcaggctccgaaaaaggtcagcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRP36

Protein Analysis

101

Amino Acids

11.36

Weight (kDa)

5.57

Isoelectric Point (pI)

89.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12650 AT1G12650 AT1G12650 AT1G12650
fragaria_vesca	FvH4_3g24970 FvH4_7g07500
malus_domestica	MD03G1146200.v1.1 MD11G1165500.v1.1
prunus_persica	Prupe.6G131000_v2.0.a1 Prupe.8G125000_v2.0.a1
pyrus_communis	pycom03g10060
rosa_chinensis	RchiOBHm_Chr5g0045251
rosa_laevigata	RLG00000034349
rosa_multiflora	Rmu_sc0001773.1_g000021 Rmu_sc0001773.1_g000022 Rmu_sc0007992.1_g000004
rosa_roxburghii	Rroxscaffold_1G00035800
rosa_rugosa	Rorug05G0222100
rosa_samantha	Rh5AG303200 Rh5BG311800 Rh5CG337900 Rh5DG321900
rosa_wichuraiana	Rw5G028150 Rw5G028400 Rw5G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	154
AciI	CCGC	1 cut(s)	122
AcoI	YGGCCR	2 cut(s)	208, 227
AfiI	CCNNNNNNNGG	1 cut(s)	232
AluBI	AGCT	4 cut(s)	11, 118, 243, 300
AluI	AGCT	4 cut(s)	11, 118, 243, 300
AoxI	GGCC	2 cut(s)	208, 227
ApeKI	GCWGC	2 cut(s)	15, 243
AspLEI	GCGC	2 cut(s)	154, 156
AsuHPI	GGTGA	1 cut(s)	57
AsuII	TTCGAA	1 cut(s)	48
BbsI	GAAGAC	2 cut(s)	44, 57
BbvI	GCAGC	2 cut(s)	27, 230
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BisI	GCNGC	2 cut(s)	16, 244
BlsI	GCNGC	2 cut(s)	17, 245
BmiI	GGNNCC	1 cut(s)	285
BpiI	GAAGAC	2 cut(s)	44, 57
Bpu14I	TTCGAA	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	32
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	32
BsePI	GCGCGC	1 cut(s)	152
BseRI	GAGGAG	6 cut(s)	107, 110, 113, 116, 125, 128
BseXI	GCAGC	2 cut(s)	27, 230
Bsh1236I	CGCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	210, 229
BsiSI	CCGG	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	232
BsnI	GGCC	2 cut(s)	210, 229
Bsp119I	TTCGAA	1 cut(s)	48
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	2 cut(s)	210, 229
BspFNI	CGCG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	285
BspT104I	TTCGAA	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	225
BssHII	GCGCGC	1 cut(s)	152
Bst6I	CTCTTC	3 cut(s)	79, 84, 189
BstBI	TTCGAA	1 cut(s)	48
BstC8I	GCNNGC	4 cut(s)	9, 13, 120, 154
BstF5I	GGATG	1 cut(s)	130
BstFNI	CGCG	1 cut(s)	154
BstHHI	GCGC	2 cut(s)	154, 156
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNSI	RCATGY	1 cut(s)	173
BstUI	CGCG	1 cut(s)	154
BstV1I	GCAGC	2 cut(s)	27, 230
BstV2I	GAAGAC	2 cut(s)	44, 57
BsuRI	GGCC	2 cut(s)	210, 229
BtsCI	GGATG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	4 cut(s)	9, 13, 120, 154
CfoI	GCGC	2 cut(s)	154, 156
Cfr10I	RCCGGY	1 cut(s)	225
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	9 cut(s)	11, 118, 187, 210, 229, 243, 253, 284, 300
CviKI_1	RGCY	9 cut(s)	11, 118, 187, 210, 229, 243, 253, 284, 300
EaeI	YGGCCR	2 cut(s)	208, 227
Eam1104I	CTCTTC	3 cut(s)	79, 84, 189
EarI	CTCTTC	3 cut(s)	79, 84, 189
FaeI	CATG	1 cut(s)	173
FaiI	YATR	1 cut(s)	171
FalI	AAGNNNNNCTT	1 cut(s)	284
FatI	CATG	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	16, 244
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	2 cut(s)	16, 244
GlaI	GCGC	2 cut(s)	153, 155
GluI	GCNGC	2 cut(s)	16, 244
HaeIII	GGCC	2 cut(s)	210, 229
HapII	CCGG	1 cut(s)	226
HhaI	GCGC	2 cut(s)	154, 156
Hin1II	CATG	1 cut(s)	173
Hin6I	GCGC	2 cut(s)	152, 154
HinP1I	GCGC	2 cut(s)	152, 154
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	1 cut(s)	57
Hpy188I	TCNGA	3 cut(s)	26, 82, 288
HpyAV	CCTTC	2 cut(s)	78, 196
HpyCH4V	TGCA	2 cut(s)	145, 246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
Hsp92II	CATG	1 cut(s)	173
HspAI	GCGC	2 cut(s)	152, 154
LmnI	GCTCC	4 cut(s)	4, 115, 161, 289
LpnPI	CCDG	4 cut(s)	45, 239, 266, 267
Lsp1109I	GCAGC	2 cut(s)	27, 230
MaeIII	GTNAC	1 cut(s)	127
MboII	GAAGA	8 cut(s)	49, 62, 66, 69, 95, 101, 206, 211
MspI	CCGG	1 cut(s)	226
MvnI	CGCG	1 cut(s)	154
MwoI	GCNNNNNNNGC	1 cut(s)	151
NlaIII	CATG	1 cut(s)	173
NlaIV	GGNNCC	1 cut(s)	285
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	1 cut(s)	173
NspV	TTCGAA	1 cut(s)	48
PauI	GCGCGC	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	17, 245
PspN4I	GGNNCC	1 cut(s)	285
PteI	GCGCGC	1 cut(s)	152
SatI	GCNGC	2 cut(s)	16, 244
SetI	ASST	8 cut(s)	13, 70, 120, 240, 245, 276, 297, 302
SfuI	TTCGAA	1 cut(s)	48
SsiI	CCGC	1 cut(s)	122
TaqI	TCGA	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	59
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	2 cut(s)	15, 243
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	102
TspRI	CASTG	1 cut(s)	39
XceI	RCATGY	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.