Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007303

Physical Location & Seq

Genomic Coordinates Forward (+)

7391634 .. 7395944

Gene Structure 4311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGATCACCGGAGGAAGGGAGGCAATAGCTTCGTCTGAGGTGGCCGGAAAACGGAGTTCCGACAAAGTCTCCGGTCGGACCCCAAACACCCAAAATCCCCTTCGTCATCTTCTCCATCCGCCGACGTTGCTCCGGTCACCGACTTGGTCCAAAGGAGCTTACTTAATTCAGGTCCAGCGAAGAATTCAAATCCTCCATACAATCTCCAAATTCGAAATGAAGCAACCACCCAGCACAATCGGAAAGCCAGTGAAGACGAAGTTTGAAGACCCCGAATCATCATCCTATTCTTCCGAAGATGAAGAGGAGATAGAGGAGGAGCTTGCAGATGTGACCTTTGGGGATTTGCAGAAGGCGCGATCCAACGGCTCGCATGTCTTGTTGCCTCAGCCTAAGCTTAAAGATGACAAGAAGAAGTCTGCCCGAGCTAACAAGAACCGGCCGATGGAGGTGAGTAGCAAGAAGCCTGTCAGTAGATTTAGGGAGGTCATCCAAGCTCCGAAAAAGGTGGTACGTGATCCGCGTTTTGAATCTTTATGCGGAACACTGAATGTTGATGGATTTAGGAAGAGATATGATTTTTTGTTTTCAAACGAGCTTCCTGCTGAAAAGGAGGATCTAAAGAAACAATTGAAGACATCCAAGGACCCAGAAGTCATTGAAGATCTAAAGAAGCGCATATCTTGGATTGATAAACAGCTAAAATCTGATTCGTCTAAGCATACTGAAGCTGAAATTCTAGCTAAGCACAAGAAAAAAGAGAGAGAAAAAGCAAAGCAAGGGAAACAACCCTTCTTTATCAAGAAATCTGATATCCGGAAGAAACGACTTATTGAAAAGTATAAAAATCTGGAGGGATCTGGCAAACTTGATAACTTCTTGGAGCAAAGGCGAAAGAAGAATGCTTCAAAGGACCACAGATACATGCCGTACCGTAGACCTGACAACATTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRP36

Protein Analysis

319

Amino Acids

36.77

Weight (kDa)

9.88

Isoelectric Point (pI)

61.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRP36	PF06102	142 - 307	2.5e-53	rRNA biogenesis protein RRP36

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12650 AT1G12650 AT1G12650 AT1G12650
fragaria_vesca	FvH4_3g24970 FvH4_7g07500
malus_domestica	MD03G1146200.v1.1 MD11G1165500.v1.1
prunus_persica	Prupe.6G131000_v2.0.a1 Prupe.8G125000_v2.0.a1
pyrus_communis	pycom03g10060
rosa_chinensis	RchiOBHm_Chr5g0045251
rosa_laevigata	RLG00000034349
rosa_multiflora	Rmu_sc0001773.1_g000021 Rmu_sc0001773.1_g000022 Rmu_sc0007992.1_g000004
rosa_roxburghii	Rroxscaffold_1G00035800
rosa_rugosa	Rorug05G0222100
rosa_samantha	Rh5AG303200 Rh5BG311800 Rh5CG337900 Rh5DG321900
rosa_wichuraiana	Rw5G028150 Rw5G028400 Rw5G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	653
AccI	GTMKAC	1 cut(s)	937
AccII	CGCG	2 cut(s)	358, 523
AccIII	TCCGGA	1 cut(s)	816
AciI	CCGC	3 cut(s)	119, 521, 540
AclWI	GGATC	4 cut(s)	354, 512, 624, 865
AcoI	YGGCCR	2 cut(s)	42, 440
AcsI	RAATTY	3 cut(s)	183, 209, 735
AcuI	CTGAAG	1 cut(s)	747
AfaI	GTAC	2 cut(s)	513, 932
AfiI	CCNNNNNNNGG	3 cut(s)	15, 51, 445
AgsI	TTSAA	8 cut(s)	188, 266, 530, 591, 634, 662, 836, 909
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	4 cut(s)	354, 512, 624, 865
Ama87I	CYCGRG	1 cut(s)	423
Aor13HI	TCCGGA	1 cut(s)	816
AoxI	GGCC	2 cut(s)	42, 440
ApoI	RAATTY	3 cut(s)	183, 209, 735
AspLEI	GCGC	2 cut(s)	358, 678
AspS9I	GGNCC	5 cut(s)	78, 147, 172, 646, 913
AsuHPI	GGTGA	2 cut(s)	129, 463
AsuII	TTCGAA	1 cut(s)	213
AvaI	CYCGRG	1 cut(s)	423
AvaII	GGWCC	5 cut(s)	78, 147, 172, 646, 913
BbsI	GAAGAC	3 cut(s)	260, 273, 641
BbvCI	CCTCAGC	1 cut(s)	387
BccI	CCATC	3 cut(s)	123, 439, 551
BceAI	ACGGC	2 cut(s)	382, 913
BcgI	CGANNNNNNTGC	4 cut(s)	12, 46, 584, 618
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	740
BglII	AGATCT	1 cut(s)	664
BlpI	GCTNAGC	1 cut(s)	744
Bme18I	GGWCC	5 cut(s)	78, 147, 172, 646, 913
BmeT110I	CYCGRG	1 cut(s)	423
BmgT120I	GGNCC	5 cut(s)	78, 147, 172, 646, 913
BmiI	GGNNCC	2 cut(s)	80, 648
BpiI	GAAGAC	3 cut(s)	260, 273, 641
BpmI	CTGGAG	1 cut(s)	872
Bpu10I	CCTNAGC	2 cut(s)	387, 393
Bpu1102I	GCTNAGC	1 cut(s)	744
Bpu14I	TTCGAA	1 cut(s)	213
BsaAI	YACGTR	1 cut(s)	515
BsaJI	CCNNGG	1 cut(s)	642
BsaWI	WCCGGW	4 cut(s)	8, 71, 132, 816
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 51, 445
Bse118I	RCCGGY	1 cut(s)	438
Bse1I	ACTGG	1 cut(s)	248
BseAI	TCCGGA	1 cut(s)	816
BseDI	CCNNGG	1 cut(s)	642
BseGI	GGATG	4 cut(s)	115, 281, 489, 638
BseLI	CCNNNNNNNGG	3 cut(s)	15, 51, 445
BseMII	CTCAG	2 cut(s)	27, 401
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	3 cut(s)	320, 329, 332
BseX3I	CGGCCG	1 cut(s)	440
BseYI	CCCAGC	1 cut(s)	230
Bsh1236I	CGCG	2 cut(s)	358, 523
Bsh1285I	CGRYCG	2 cut(s)	76, 443
BshFI	GGCC	2 cut(s)	44, 442
BsiEI	CGRYCG	2 cut(s)	76, 443
BsiHKCI	CYCGRG	1 cut(s)	423
BsiSI	CCGG	6 cut(s)	9, 45, 72, 133, 439, 817
BslI	CCNNNNNNNGG	3 cut(s)	15, 51, 445
BsmAI	GTCTC	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	907
BsnI	GGCC	2 cut(s)	44, 442
BsoBI	CYCGRG	1 cut(s)	423
Bsp119I	TTCGAA	1 cut(s)	213
Bsp13I	TCCGGA	1 cut(s)	816
Bsp143I	GATC	6 cut(s)	3, 359, 517, 616, 664, 857
Bsp1720I	GCTNAGC	1 cut(s)	744
BspACI	CCGC	3 cut(s)	119, 521, 540
BspANI	GGCC	2 cut(s)	44, 442
BspCNI	CTCAG	2 cut(s)	28, 400
BspEI	TCCGGA	1 cut(s)	816
BspFNI	CGCG	2 cut(s)	358, 523
BspLI	GGNNCC	2 cut(s)	80, 648
BspPI	GGATC	4 cut(s)	354, 512, 624, 865
BspT104I	TTCGAA	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	438
BssECI	CCNNGG	1 cut(s)	642
BssMI	GATC	6 cut(s)	3, 359, 517, 616, 664, 857
BssT1I	CCWWGG	1 cut(s)	642
Bst4CI	ACNGT	1 cut(s)	935
Bst6I	CTCTTC	2 cut(s)	297, 563
BstBAI	YACGTR	1 cut(s)	515
BstBI	TTCGAA	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	324, 371
BstDEI	CTNAG	5 cut(s)	36, 387, 393, 717, 744
BstEII	GGTNACC	1 cut(s)	135
BstF5I	GGATG	4 cut(s)	115, 281, 489, 638
BstFNI	CGCG	2 cut(s)	358, 523
BstHHI	GCGC	2 cut(s)	358, 678
BstKTI	GATC	6 cut(s)	6, 362, 520, 619, 667, 860
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	6 cut(s)	3, 359, 517, 616, 664, 857
BstMCI	CGRYCG	2 cut(s)	76, 443
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 355
BstNSI	RCATGY	2 cut(s)	377, 928
BstPI	GGTNACC	1 cut(s)	135
BstUI	CGCG	2 cut(s)	358, 523
BstV2I	GAAGAC	3 cut(s)	260, 273, 641
BstX2I	RGATCY	3 cut(s)	616, 664, 857
BstYI	RGATCY	3 cut(s)	616, 664, 857
BstZI	CGGCCG	1 cut(s)	440
BsuRI	GGCC	2 cut(s)	44, 442
BtsCI	GGATG	4 cut(s)	115, 281, 489, 638
BtsIMutI	CAGTG	2 cut(s)	255, 545
Cac8I	GCNNGC	2 cut(s)	324, 371
CfoI	GCGC	2 cut(s)	358, 678
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	5 cut(s)	78, 147, 172, 646, 913
Csp6I	GTAC	2 cut(s)	512, 931
CviAII	CATG	2 cut(s)	374, 925
CviQI	GTAC	2 cut(s)	512, 931
DdeI	CTNAG	5 cut(s)	36, 387, 393, 717, 744
DpnI	GATC	6 cut(s)	5, 361, 519, 618, 666, 859
DpnII	GATC	6 cut(s)	3, 359, 517, 616, 664, 857
DrdI	GACNNNNNNGTC	1 cut(s)	653
DseDI	GACNNNNNNGTC	1 cut(s)	653
EaeI	YGGCCR	2 cut(s)	42, 440
EagI	CGGCCG	1 cut(s)	440
Eam1104I	CTCTTC	2 cut(s)	297, 563
EarI	CTCTTC	2 cut(s)	297, 563
EciI	GGCGGA	1 cut(s)	108
EclXI	CGGCCG	1 cut(s)	440
Eco130I	CCWWGG	1 cut(s)	642
Eco32I	GATATC	1 cut(s)	814
Eco47I	GGWCC	5 cut(s)	78, 147, 172, 646, 913
Eco52I	CGGCCG	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	747
Eco88I	CYCGRG	1 cut(s)	423
Eco91I	GGTNACC	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	646
EcoO65I	GGTNACC	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	183
EcoRV	GATATC	1 cut(s)	814
EcoT14I	CCWWGG	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	642
FaeI	CATG	2 cut(s)	377, 928
FaiI	YATR	8 cut(s)	198, 375, 538, 576, 680, 723, 843, 926
FatI	CATG	2 cut(s)	373, 924
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	937
FokI	GGATG	4 cut(s)	102, 268, 476, 625
FspBI	CTAG	1 cut(s)	740
GlaI	GCGC	2 cut(s)	357, 677
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	872
HaeIII	GGCC	2 cut(s)	44, 442
HapII	CCGG	6 cut(s)	9, 45, 72, 133, 439, 817
HhaI	GCGC	2 cut(s)	358, 678
Hin1II	CATG	2 cut(s)	377, 928
Hin6I	GCGC	2 cut(s)	356, 676
HinP1I	GCGC	2 cut(s)	356, 676
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	3 cut(s)	275, 530, 710
HpaII	CCGG	6 cut(s)	9, 45, 72, 133, 439, 817
HphI	GGTGA	2 cut(s)	129, 463
Hpy166II	GTNNAC	1 cut(s)	938
Hpy188I	TCNGA	8 cut(s)	37, 61, 78, 242, 295, 501, 709, 811
Hpy188III	TCNNGA	3 cut(s)	802, 817, 851
Hpy8I	GTNNAC	1 cut(s)	938
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	4 cut(s)	9, 110, 346, 802
HpyCH4III	ACNGT	1 cut(s)	935
HpyCH4IV	ACGT	2 cut(s)	125, 514
HpyCH4V	TGCA	2 cut(s)	326, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 355
HpyF3I	CTNAG	5 cut(s)	36, 387, 393, 717, 744
HpySE526I	ACGT	2 cut(s)	125, 514
Hsp92II	CATG	2 cut(s)	377, 928
HspAI	GCGC	2 cut(s)	356, 676
Kpn2I	TCCGGA	1 cut(s)	816
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	6 cut(s)	3, 359, 517, 616, 664, 857
LmnI	GCTCC	5 cut(s)	135, 155, 319, 502, 883
MaeI	CTAG	1 cut(s)	740
MaeII	ACGT	2 cut(s)	125, 514
MaeIII	GTNAC	2 cut(s)	135, 331
MalI	GATC	6 cut(s)	5, 361, 519, 618, 666, 859
MboI	GATC	6 cut(s)	3, 359, 517, 616, 664, 857
MfeI	CAATTG	1 cut(s)	629
MflI	RGATCY	3 cut(s)	616, 664, 857
MluCI	AATT	5 cut(s)	165, 183, 209, 629, 735
MmeI	TCCRAC	3 cut(s)	56, 84, 387
MroI	TCCGGA	1 cut(s)	816
MseI	TTAA	2 cut(s)	164, 399
MspI	CCGG	6 cut(s)	9, 45, 72, 133, 439, 817
MunI	CAATTG	1 cut(s)	629
Mva1269I	GAATGC	1 cut(s)	907
MvnI	CGCG	2 cut(s)	358, 523
MwoI	GCNNNNNNNGC	2 cut(s)	127, 355
NdeII	GATC	6 cut(s)	3, 359, 517, 616, 664, 857
NlaIII	CATG	2 cut(s)	377, 928
NlaIV	GGNNCC	2 cut(s)	80, 648
NmuCI	GTSAC	2 cut(s)	135, 331
NspI	RCATGY	2 cut(s)	377, 928
NspV	TTCGAA	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	520
PctI	GAATGC	1 cut(s)	907
PfeI	GAWTC	3 cut(s)	275, 530, 710
PflFI	GACNNNGTC	2 cut(s)	65, 145
Ppu21I	YACGTR	1 cut(s)	515
PpuMI	RGGWCCY	1 cut(s)	646
Psp5II	RGGWCCY	1 cut(s)	646
PspEI	GGTNACC	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	80, 648
PspPI	GGNCC	5 cut(s)	78, 147, 172, 646, 913
PspPPI	RGGWCCY	1 cut(s)	646
PsuI	RGATCY	3 cut(s)	616, 664, 857
PsyI	GACNNNGTC	2 cut(s)	65, 145
RsaI	GTAC	2 cut(s)	513, 932
RsaNI	GTAC	2 cut(s)	512, 931
SaqAI	TTAA	2 cut(s)	164, 399
Sau3AI	GATC	6 cut(s)	3, 359, 517, 616, 664, 857
Sau96I	GGNCC	5 cut(s)	78, 147, 172, 646, 913
SfuI	TTCGAA	1 cut(s)	213
SinI	GGWCC	5 cut(s)	78, 147, 172, 646, 913
Sse9I	AATT	5 cut(s)	165, 183, 209, 629, 735
SsiI	CCGC	3 cut(s)	119, 521, 540
SspMI	CTAG	1 cut(s)	740
StyI	CCWWGG	1 cut(s)	642
TaaI	ACNGT	1 cut(s)	935
TaiI	ACGT	2 cut(s)	128, 517
TaqI	TCGA	1 cut(s)	213
TasI	AATT	5 cut(s)	165, 183, 209, 629, 735
TfiI	GAWTC	3 cut(s)	275, 530, 710
Tru1I	TTAA	2 cut(s)	164, 399
Tru9I	TTAA	2 cut(s)	164, 399
TscAI	CASTG	2 cut(s)	255, 552
TseFI	GTSAC	2 cut(s)	135, 331
Tsp45I	GTSAC	2 cut(s)	135, 331
TspDTI	ATGAA	2 cut(s)	233, 315
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	2 cut(s)	255, 552
Tth111I	GACNNNGTC	2 cut(s)	65, 145
VpaK11BI	GGWCC	5 cut(s)	78, 147, 172, 646, 913
XapI	RAATTY	3 cut(s)	183, 209, 735
XceI	RCATGY	2 cut(s)	377, 928
XmiI	GTMKAC	1 cut(s)	937
XspI	CTAG	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.