Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007303

Physical Location & Seq

Genomic Coordinates Reverse (-)

18008854 .. 18011001

Gene Structure 2148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g24970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCTAAAAAACAAGATCATCAAGAATTCTACCTTCGTTTTCTCTCTGCTCTTCATCTTAACACGAAGACCCCGAATCATCTTCTTCCTCGACGAAGAGGAGCTTGCAGATGTGACCTTTGGGGATTTGCAGAAGGCGCGATCTAACGGCTCGCATGTCTTGTTGCCCCCTCAGCCTAAAGATGACAAGAAGAAGGCTGCCCGAGCTAACAAGAACTGGCCGATGGAGGTGAGTAGCAAGAAGCCTGTCAGTAGATTCAGGGAGGTCATCCGAGCGCCGAAAAAGGTGGTTCGTGATCCTCGTTTTGAATCTTTATGTGGAACACTGAATGTTGATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0000469 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko03050 ko04964 ko05016 ko05169 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map03050 map04964 map05016 map05169

Pfam Domains

Protein Families

RRM_1 RRP36

Protein Analysis

114

Amino Acids

12.98

Weight (kDa)

10.19

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRP36	PF06102	68 - 112	1.1e-14	rRNA biogenesis protein RRP36

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0007303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12650 AT1G12650 AT1G12650 AT1G12650
fragaria_vesca	FvH4_3g24970 FvH4_7g07500
malus_domestica	MD03G1146200.v1.1 MD11G1165500.v1.1
prunus_persica	Prupe.6G131000_v2.0.a1 Prupe.8G125000_v2.0.a1
pyrus_communis	pycom03g10060
rosa_chinensis	RchiOBHm_Chr5g0045251
rosa_laevigata	RLG00000034349
rosa_multiflora	Rmu_sc0001773.1_g000021 Rmu_sc0001773.1_g000022 Rmu_sc0007992.1_g000004
rosa_roxburghii	Rroxscaffold_1G00035800
rosa_rugosa	Rorug05G0222100
rosa_samantha	Rh5AG303200 Rh5BG311800 Rh5CG337900 Rh5DG321900
rosa_wichuraiana	Rw5G028150 Rw5G028400 Rw5G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	139
AclWI	GGATC	1 cut(s)	290
AcoI	YGGCCR	1 cut(s)	218
AcsI	RAATTY	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	308
AluBI	AGCT	2 cut(s)	103, 206
AluI	AGCT	2 cut(s)	103, 206
AlwI	GGATC	1 cut(s)	290
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	25
AspLEI	GCGC	2 cut(s)	139, 277
AsuHPI	GGTGA	1 cut(s)	241
AvaI	CYCGRG	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	73
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	2 cut(s)	217, 329
BceAI	ACGGC	1 cut(s)	163
BfoI	RGCGCY	1 cut(s)	278
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
BmeT110I	CYCGRG	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	73
Bpu10I	CCTNAGC	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	221
BseGI	GGATG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	220
BsiHKCI	CYCGRG	1 cut(s)	201
BsnI	GGCC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	15, 140, 295
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	139
BspPI	GGATC	1 cut(s)	290
BspQI	GCTCTTC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	221
BssMI	GATC	3 cut(s)	15, 140, 295
Bst6I	CTCTTC	2 cut(s)	56, 90
BstC8I	GCNNGC	2 cut(s)	105, 152
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	267
BstFNI	CGCG	1 cut(s)	139
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	2 cut(s)	139, 277
BstKTI	GATC	3 cut(s)	18, 143, 298
BstMBI	GATC	3 cut(s)	15, 140, 295
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 172, 203
BstNSI	RCATGY	1 cut(s)	158
BstUI	CGCG	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	323
Cac8I	GCNNGC	2 cut(s)	105, 152
CfoI	GCGC	2 cut(s)	139, 277
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	8 cut(s)	103, 150, 175, 197, 206, 220, 244, 339
CviKI_1	RGCY	8 cut(s)	103, 150, 175, 197, 206, 220, 244, 339
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	3 cut(s)	17, 142, 297
DpnII	GATC	3 cut(s)	15, 140, 295
EaeI	YGGCCR	1 cut(s)	218
Eam1104I	CTCTTC	2 cut(s)	56, 90
EarI	CTCTTC	2 cut(s)	56, 90
Eco88I	CYCGRG	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	25
FaeI	CATG	1 cut(s)	158
FaiI	YATR	2 cut(s)	156, 316
FalI	AAGNNNNNCTT	2 cut(s)	87, 119
FatI	CATG	1 cut(s)	154
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	198
GlaI	GCGC	2 cut(s)	138, 276
GluI	GCNGC	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	220
HhaI	GCGC	2 cut(s)	139, 277
Hin1II	CATG	1 cut(s)	158
Hin6I	GCGC	2 cut(s)	137, 275
HinP1I	GCGC	2 cut(s)	137, 275
HinfI	GANTC	3 cut(s)	75, 255, 308
HphI	GGTGA	1 cut(s)	241
Hpy188I	TCNGA	1 cut(s)	272
Hpy188III	TCNNGA	2 cut(s)	22, 293
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	43, 127, 187
HpyCH4V	TGCA	2 cut(s)	107, 130
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 172, 203
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	158
HspAI	GCGC	2 cut(s)	137, 275
Kzo9I	GATC	3 cut(s)	15, 140, 295
LguI	GCTCTTC	1 cut(s)	56
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	3 cut(s)	202, 244, 258
Lsp1109I	GCAGC	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	3 cut(s)	17, 142, 297
MboI	GATC	3 cut(s)	15, 140, 295
MboII	GAAGA	6 cut(s)	43, 73, 76, 78, 107, 202
MluCI	AATT	1 cut(s)	25
MnlI	CCTC	6 cut(s)	91, 98, 180, 220, 256, 309
MseI	TTAA	1 cut(s)	59
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	3 cut(s)	136, 172, 203
NdeII	GATC	3 cut(s)	15, 140, 295
NlaIII	CATG	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	2 cut(s)	70, 298
PfeI	GAWTC	3 cut(s)	75, 255, 308
PkrI	GCNGC	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	3 cut(s)	15, 140, 295
SetI	ASST	7 cut(s)	35, 105, 119, 208, 231, 267, 288
Sse9I	AATT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	90
TasI	AATT	1 cut(s)	25
TfiI	GAWTC	3 cut(s)	75, 255, 308
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	43
TspRI	CASTG	1 cut(s)	330
XapI	RAATTY	1 cut(s)	25
XceI	RCATGY	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.