Rw5G028150

Ribosomal RNA processing protein 36 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0007303
Physical Location & Seq
Reverse (-)
42383138 .. 42387220
4083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G028150.1

Sequence Viewer

Length: 741 bp
ATGGAGCAAGCTCGCAGCACAATCGGAAAACCAGTGAAGACGAAGTTCGAAGACCCCGAATCATCACCTTCCTCTTCTTCCGAAGATGAAGAGGAGGAGGAGATAGAGGAGGAGCTTGCGGATGTGACATTCGGGGATTTGCAGAGGGCGCGCTCCAATGGGTCGCATGTAGTGTTGCCGAAGCCCAAAGAAGAGAAGAAGGGTGGCCGAGCAAACAAGAACCGGCCAATGGAGGTGAGCTGCAAGAAGCCTGTCAGTAGATTTAGAGAGGTCATTCAAGCTCCGAAAAAGGTGGTACGTGATCCGCGTTTTGAATCTTTATGCGGAACTCTGAATGTTGATGGGTTTAGGAAGAGATATGATTTTTTGTTTTCAAACGAGCTTCCTGCTGAAAAGCAGGATCTAAAGAAACAATTGAAAAAATCGAAGGATCCAGAAGTCATTGAAGATCTAAAGCAGCGCATATCTTGGATTGATAAACAGCTAAAATCTGATTCATCTAAGCGCACTGAAGCTGAAATTCTAGCTCAGCACAAGAAAAAAGAGAGAGAAAAGGCAAAGCAAGGAAAACAACCCTTCTTTATCAAGAAATCTGAGATCCGAAAGAAACGACTTGTTGAAAAGTACAAAAATCTCAAGGGATCTGGCAAGCTTGAAGCCTTCTTGGAGCAAAGGCGAAAGAAGAATGCTACAAAGGACCACAGATACATGCCGTACCGTAGACCTGACAACATTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRP36

Protein Analysis

246

Amino Acids

28.75

Weight (kDa)

9.68

Isoelectric Point (pI)

72.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRP36 PF06102 70 - 235 2.4e-53 rRNA biogenesis protein RRP36
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 721
AccII CGCG 2 cut(s) 151, 307
AciI CCGC 3 cut(s) 119, 305, 324
AclWI GGATC 6 cut(s) 296, 408, 425, 438, 592, 649
AcoI YGGCCR 2 cut(s) 205, 224
AcsI RAATTY 1 cut(s) 519
AcuI CTGAAG 1 cut(s) 531
AfaI GTAC 3 cut(s) 297, 626, 716
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 7 cut(s) 278, 314, 375, 418, 446, 620, 656
AluBI AGCT 9 cut(s) 11, 115, 240, 281, 382, 484, 515, 527, 652
AluI AGCT 9 cut(s) 11, 115, 240, 281, 382, 484, 515, 527, 652
AlwI GGATC 6 cut(s) 296, 408, 425, 438, 592, 649
AoxI GGCC 2 cut(s) 205, 224
ApeKI GCWGC 3 cut(s) 15, 240, 457
ApoI RAATTY 1 cut(s) 519
AspLEI GCGC 4 cut(s) 151, 153, 462, 507
AspS9I GGNCC 1 cut(s) 697
AsuHPI GGTGA 2 cut(s) 57, 247
AsuII TTCGAA 1 cut(s) 48
AvaII GGWCC 1 cut(s) 697
BamHI GGATCC 1 cut(s) 430
BbsI GAAGAC 2 cut(s) 44, 57
BbvI GCAGC 3 cut(s) 27, 227, 469
BccI CCATC 1 cut(s) 335
BceAI ACGGC 1 cut(s) 697
BcgI CGANNNNNNTGC 4 cut(s) 4, 38, 368, 402
BfaI CTAG 1 cut(s) 524
BglII AGATCT 1 cut(s) 448
BisI GCNGC 3 cut(s) 16, 241, 458
BlpI GCTNAGC 1 cut(s) 528
BlsI GCNGC 3 cut(s) 17, 242, 459
Bme18I GGWCC 1 cut(s) 697
BmgT120I GGNCC 1 cut(s) 697
BmiI GGNNCC 1 cut(s) 432
BpiI GAAGAC 2 cut(s) 44, 57
Bpu1102I GCTNAGC 1 cut(s) 528
Bpu14I TTCGAA 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 620
BsaAI YACGTR 1 cut(s) 299
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse118I RCCGGY 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 32
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 542, 585
BseNI ACTGG 1 cut(s) 32
BsePI GCGCGC 1 cut(s) 149
BseRI GAGGAG 5 cut(s) 107, 110, 113, 122, 125
BseXI GCAGC 3 cut(s) 27, 227, 469
Bsh1236I CGCG 2 cut(s) 151, 307
BshFI GGCC 2 cut(s) 207, 226
BsiSI CCGG 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 229
BsmI GAATGC 1 cut(s) 691
BsnI GGCC 2 cut(s) 207, 226
Bsp119I TTCGAA 1 cut(s) 48
Bsp143I GATC 6 cut(s) 301, 400, 430, 448, 597, 641
Bsp1720I GCTNAGC 1 cut(s) 528
BspACI CCGC 3 cut(s) 119, 305, 324
BspANI GGCC 2 cut(s) 207, 226
BspCNI CTCAG 2 cut(s) 541, 586
BspFNI CGCG 2 cut(s) 151, 307
BspLI GGNNCC 1 cut(s) 432
BspPI GGATC 6 cut(s) 296, 408, 425, 438, 592, 649
BspT104I TTCGAA 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 222
BsrI ACTGG 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 222
BssHII GCGCGC 1 cut(s) 149
BssMI GATC 6 cut(s) 301, 400, 430, 448, 597, 641
Bst4CI ACNGT 1 cut(s) 719
Bst6I CTCTTC 4 cut(s) 79, 84, 186, 347
BstBAI YACGTR 1 cut(s) 299
BstBI TTCGAA 1 cut(s) 48
BstC8I GCNNGC 5 cut(s) 9, 13, 117, 151, 650
BstDEI CTNAG 3 cut(s) 501, 528, 594
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 2 cut(s) 151, 307
BstHHI GCGC 4 cut(s) 151, 153, 462, 507
BstKTI GATC 6 cut(s) 304, 403, 433, 451, 600, 644
BstMBI GATC 6 cut(s) 301, 400, 430, 448, 597, 641
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNSI RCATGY 2 cut(s) 170, 712
BstUI CGCG 2 cut(s) 151, 307
BstV1I GCAGC 3 cut(s) 27, 227, 469
BstV2I GAAGAC 2 cut(s) 44, 57
BstX2I RGATCY 5 cut(s) 400, 430, 448, 597, 641
BstYI RGATCY 5 cut(s) 400, 430, 448, 597, 641
BsuRI GGCC 2 cut(s) 207, 226
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 39, 507
Cac8I GCNNGC 5 cut(s) 9, 13, 117, 151, 650
CfoI GCGC 4 cut(s) 151, 153, 462, 507
Cfr10I RCCGGY 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 697
Csp6I GTAC 3 cut(s) 296, 625, 715
CviAII CATG 2 cut(s) 167, 709
CviQI GTAC 3 cut(s) 296, 625, 715
DdeI CTNAG 3 cut(s) 501, 528, 594
DpnI GATC 6 cut(s) 303, 402, 432, 450, 599, 643
DpnII GATC 6 cut(s) 301, 400, 430, 448, 597, 641
EaeI YGGCCR 2 cut(s) 205, 224
Eam1104I CTCTTC 4 cut(s) 79, 84, 186, 347
EarI CTCTTC 4 cut(s) 79, 84, 186, 347
Eco47I GGWCC 1 cut(s) 697
Eco57I CTGAAG 1 cut(s) 531
FaeI CATG 2 cut(s) 170, 712
FaiI YATR 5 cut(s) 168, 322, 360, 464, 710
FatI CATG 2 cut(s) 166, 708
FblI GTMKAC 1 cut(s) 721
Fnu4HI GCNGC 3 cut(s) 16, 241, 458
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 16, 241, 458
FspBI CTAG 1 cut(s) 524
GlaI GCGC 4 cut(s) 150, 152, 461, 506
GluI GCNGC 3 cut(s) 16, 241, 458
HaeIII GGCC 2 cut(s) 207, 226
HapII CCGG 1 cut(s) 223
HhaI GCGC 4 cut(s) 151, 153, 462, 507
Hin1II CATG 2 cut(s) 170, 712
Hin6I GCGC 4 cut(s) 149, 151, 460, 505
HinP1I GCGC 4 cut(s) 149, 151, 460, 505
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 3 cut(s) 59, 314, 494
HpaII CCGG 1 cut(s) 223
HphI GGTGA 2 cut(s) 57, 247
Hpy166II GTNNAC 1 cut(s) 722
Hpy188I TCNGA 7 cut(s) 26, 82, 285, 333, 493, 595, 602
Hpy188III TCNNGA 2 cut(s) 434, 586
Hpy8I GTNNAC 1 cut(s) 722
HpyAV CCTTC 5 cut(s) 78, 193, 421, 586, 670
HpyCH4III ACNGT 1 cut(s) 719
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 2 cut(s) 142, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 3 cut(s) 501, 528, 594
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 2 cut(s) 170, 712
HspAI GCGC 4 cut(s) 149, 151, 460, 505
Kzo9I GATC 6 cut(s) 301, 400, 430, 448, 597, 641
LmnI GCTCC 5 cut(s) 4, 112, 158, 286, 667
LpnPI CCDG 7 cut(s) 45, 236, 264, 383, 399, 447, 630
Lsp1109I GCAGC 3 cut(s) 27, 227, 469
MaeI CTAG 1 cut(s) 524
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 1 cut(s) 124
MalI GATC 6 cut(s) 303, 402, 432, 450, 599, 643
MboI GATC 6 cut(s) 301, 400, 430, 448, 597, 641
MfeI CAATTG 1 cut(s) 413
MflI RGATCY 5 cut(s) 400, 430, 448, 597, 641
MluCI AATT 2 cut(s) 413, 519
MnlI CCTC 9 cut(s) 82, 85, 88, 91, 100, 103, 138, 226, 262
MspI CCGG 1 cut(s) 223
MunI CAATTG 1 cut(s) 413
Mva1269I GAATGC 1 cut(s) 691
MvnI CGCG 2 cut(s) 151, 307
MwoI GCNNNNNNNGC 1 cut(s) 148
NdeII GATC 6 cut(s) 301, 400, 430, 448, 597, 641
NlaIII CATG 2 cut(s) 170, 712
NlaIV GGNNCC 1 cut(s) 432
NmeAIII GCCGAG 1 cut(s) 233
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 2 cut(s) 170, 712
NspV TTCGAA 1 cut(s) 48
PauI GCGCGC 1 cut(s) 149
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 304
PctI GAATGC 1 cut(s) 691
PfeI GAWTC 3 cut(s) 59, 314, 494
PkrI GCNGC 3 cut(s) 17, 242, 459
Ppu21I YACGTR 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 432
PspPI GGNCC 1 cut(s) 697
PsuI RGATCY 5 cut(s) 400, 430, 448, 597, 641
PteI GCGCGC 1 cut(s) 149
RsaI GTAC 3 cut(s) 297, 626, 716
RsaNI GTAC 3 cut(s) 296, 625, 715
SatI GCNGC 3 cut(s) 16, 241, 458
Sau3AI GATC 6 cut(s) 301, 400, 430, 448, 597, 641
Sau96I GGNCC 1 cut(s) 697
SfuI TTCGAA 1 cut(s) 48
SinI GGWCC 1 cut(s) 697
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
Sse9I AATT 2 cut(s) 413, 519
SsiI CCGC 3 cut(s) 119, 305, 324
SspMI CTAG 1 cut(s) 524
TaaI ACNGT 1 cut(s) 719
TaiI ACGT 1 cut(s) 301
TaqI TCGA 2 cut(s) 48, 425
TasI AATT 2 cut(s) 413, 519
TatI WGTACW 1 cut(s) 624
TfiI GAWTC 3 cut(s) 59, 314, 494
TscAI CASTG 2 cut(s) 39, 514
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 3 cut(s) 15, 240, 457
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 102, 486
TspRI CASTG 2 cut(s) 39, 514
VpaK11BI GGWCC 1 cut(s) 697
XapI RAATTY 1 cut(s) 519
XceI RCATGY 2 cut(s) 170, 712
XmiI GTMKAC 1 cut(s) 721
XspI CTAG 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.