Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007303

Physical Location & Seq

Genomic Coordinates Reverse (-)

38627008 .. 38630620

Gene Structure 3613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG337900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAGCAAGCTCGCAGCACAATCGGAAAACCTGTGAAGACGAAGTTCGAAGACCCCGAATCATCACCTTCCTCTTCTTCCGAAGATGAAGAGGAGGAGGAGATAGAGGAGGAGCTTGCAGATGTGACATTCGGGGATTTGCAGAGGGCGCGCTCCAATGGGACCCATGTAGTGTTGCCGAAGCCCAAAGAAGAGAAGAAGGGTGGCCGAGCAAACAAGAACCGGCCAATGGAGGTGAGCTGCAAGAAGCCTGTCAGTAGATTTAGAGAGGTCATTCAAGCTCCGAAAAAGGTGGTACGTGATCCGCGTTTTGAATCTTTATGTGGAACTCTGAATGTTGATGGGTTTAGGAAGAGATATGATTTTTTGTTTTCAAACGAGCTTCCTGCTGAAAAGCAGGATCTAAAGAAACAATTGAAAAAATCGAAGGATCCAGAAGTCATTGAAGATCTAAAGCAGCGCATATCTTGGATTGATAAACAGCTAAAATCTGATTCATCTAAGCGCACTGAAGCTGAAATTCTAGCTGAGCACAAGAAAAAAGAGAGAGAAAAAGCAAAGCAAGGAAAACAACCCTTCTTTATCAAGAAATCTGAGATCCGAAAGAAACGACTTGTTGAAAAGTACAAAAATCTCAAGGGATCTGGCAAGCTTGAAGCCTTCTTGGAGCAAAGGCGAAAGAAGAATGCTACAAAGGACCACAGATACATGCCATACCGTAGACCTGACAACATTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRP36

Protein Analysis

246

Amino Acids

28.76

Weight (kDa)

9.64

Isoelectric Point (pI)

72.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRP36	PF06102	70 - 235	1.4e-53	rRNA biogenesis protein RRP36

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12650 AT1G12650 AT1G12650 AT1G12650
fragaria_vesca	FvH4_3g24970 FvH4_7g07500
malus_domestica	MD03G1146200.v1.1 MD11G1165500.v1.1
prunus_persica	Prupe.6G131000_v2.0.a1 Prupe.8G125000_v2.0.a1
pyrus_communis	pycom03g10060
rosa_chinensis	RchiOBHm_Chr5g0045251
rosa_laevigata	RLG00000034349
rosa_multiflora	Rmu_sc0001773.1_g000021 Rmu_sc0001773.1_g000022 Rmu_sc0007992.1_g000004
rosa_roxburghii	Rroxscaffold_1G00035800
rosa_rugosa	Rorug05G0222100
rosa_samantha	Rh5AG303200 Rh5BG311800 Rh5CG337900 Rh5DG321900
rosa_wichuraiana	Rw5G028150 Rw5G028400 Rw5G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	721
AccII	CGCG	2 cut(s)	151, 307
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	6 cut(s)	296, 408, 425, 438, 592, 649
AcoI	YGGCCR	2 cut(s)	205, 224
AcsI	RAATTY	1 cut(s)	519
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	2 cut(s)	297, 626
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	7 cut(s)	278, 314, 375, 418, 446, 620, 656
AluBI	AGCT	9 cut(s)	11, 115, 240, 281, 382, 484, 515, 527, 652
AluI	AGCT	9 cut(s)	11, 115, 240, 281, 382, 484, 515, 527, 652
Alw21I	GWGCWC	1 cut(s)	534
AlwI	GGATC	6 cut(s)	296, 408, 425, 438, 592, 649
AoxI	GGCC	2 cut(s)	205, 224
ApeKI	GCWGC	3 cut(s)	15, 240, 457
ApoI	RAATTY	1 cut(s)	519
AspLEI	GCGC	4 cut(s)	151, 153, 462, 507
AspS9I	GGNCC	2 cut(s)	162, 697
AsuHPI	GGTGA	2 cut(s)	57, 247
AsuII	TTCGAA	1 cut(s)	48
AvaII	GGWCC	2 cut(s)	162, 697
BamHI	GGATCC	1 cut(s)	430
BbsI	GAAGAC	2 cut(s)	44, 57
Bbv12I	GWGCWC	1 cut(s)	534
BbvI	GCAGC	3 cut(s)	27, 227, 469
BccI	CCATC	1 cut(s)	335
BcgI	CGANNNNNNTGC	4 cut(s)	4, 38, 368, 402
BfaI	CTAG	1 cut(s)	524
BglII	AGATCT	1 cut(s)	448
BisI	GCNGC	3 cut(s)	16, 241, 458
BlpI	GCTNAGC	1 cut(s)	528
BlsI	GCNGC	3 cut(s)	17, 242, 459
Bme18I	GGWCC	2 cut(s)	162, 697
BmgT120I	GGNCC	2 cut(s)	162, 697
BmiI	GGNNCC	3 cut(s)	163, 164, 432
BpiI	GAAGAC	2 cut(s)	44, 57
Bpu1102I	GCTNAGC	1 cut(s)	528
Bpu14I	TTCGAA	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	620
BsaAI	YACGTR	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse118I	RCCGGY	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	2 cut(s)	519, 585
BsePI	GCGCGC	1 cut(s)	149
BseRI	GAGGAG	5 cut(s)	107, 110, 113, 122, 125
BseXI	GCAGC	3 cut(s)	27, 227, 469
Bsh1236I	CGCG	2 cut(s)	151, 307
BshFI	GGCC	2 cut(s)	207, 226
BsiHKAI	GWGCWC	1 cut(s)	534
BsiSI	CCGG	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	2 cut(s)	207, 226
Bsp119I	TTCGAA	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	6 cut(s)	301, 400, 430, 448, 597, 641
Bsp1720I	GCTNAGC	1 cut(s)	528
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	2 cut(s)	207, 226
BspCNI	CTCAG	2 cut(s)	520, 586
BspFNI	CGCG	2 cut(s)	151, 307
BspLI	GGNNCC	3 cut(s)	163, 164, 432
BspPI	GGATC	6 cut(s)	296, 408, 425, 438, 592, 649
BspT104I	TTCGAA	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	222
BssHII	GCGCGC	1 cut(s)	149
BssMI	GATC	6 cut(s)	301, 400, 430, 448, 597, 641
Bst4CI	ACNGT	1 cut(s)	719
Bst6I	CTCTTC	4 cut(s)	79, 84, 186, 347
BstBAI	YACGTR	1 cut(s)	299
BstBI	TTCGAA	1 cut(s)	48
BstC8I	GCNNGC	5 cut(s)	9, 13, 117, 151, 650
BstDEI	CTNAG	3 cut(s)	501, 528, 594
BstFNI	CGCG	2 cut(s)	151, 307
BstHHI	GCGC	4 cut(s)	151, 153, 462, 507
BstKTI	GATC	6 cut(s)	304, 403, 433, 451, 600, 644
BstMBI	GATC	6 cut(s)	301, 400, 430, 448, 597, 641
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	712
BstUI	CGCG	2 cut(s)	151, 307
BstV1I	GCAGC	3 cut(s)	27, 227, 469
BstV2I	GAAGAC	2 cut(s)	44, 57
BstX2I	RGATCY	5 cut(s)	400, 430, 448, 597, 641
BstYI	RGATCY	5 cut(s)	400, 430, 448, 597, 641
BsuRI	GGCC	2 cut(s)	207, 226
BtsIMutI	CAGTG	1 cut(s)	507
Cac8I	GCNNGC	5 cut(s)	9, 13, 117, 151, 650
CfoI	GCGC	4 cut(s)	151, 153, 462, 507
Cfr10I	RCCGGY	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	162, 697
Csp6I	GTAC	2 cut(s)	296, 625
CviAII	CATG	2 cut(s)	167, 709
CviQI	GTAC	2 cut(s)	296, 625
DdeI	CTNAG	3 cut(s)	501, 528, 594
DpnI	GATC	6 cut(s)	303, 402, 432, 450, 599, 643
DpnII	GATC	6 cut(s)	301, 400, 430, 448, 597, 641
EaeI	YGGCCR	2 cut(s)	205, 224
Eam1104I	CTCTTC	4 cut(s)	79, 84, 186, 347
EarI	CTCTTC	4 cut(s)	79, 84, 186, 347
Eco47I	GGWCC	2 cut(s)	162, 697
Eco57I	CTGAAG	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	162
FaeI	CATG	2 cut(s)	170, 712
FaiI	YATR	6 cut(s)	168, 322, 360, 464, 710, 715
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	2 cut(s)	166, 708
FblI	GTMKAC	1 cut(s)	721
Fnu4HI	GCNGC	3 cut(s)	16, 241, 458
Fsp4HI	GCNGC	3 cut(s)	16, 241, 458
FspBI	CTAG	1 cut(s)	524
GlaI	GCGC	4 cut(s)	150, 152, 461, 506
GluI	GCNGC	3 cut(s)	16, 241, 458
HaeIII	GGCC	2 cut(s)	207, 226
HapII	CCGG	1 cut(s)	223
HhaI	GCGC	4 cut(s)	151, 153, 462, 507
Hin1II	CATG	2 cut(s)	170, 712
Hin6I	GCGC	4 cut(s)	149, 151, 460, 505
HinP1I	GCGC	4 cut(s)	149, 151, 460, 505
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	3 cut(s)	59, 314, 494
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	2 cut(s)	57, 247
Hpy166II	GTNNAC	1 cut(s)	722
Hpy188I	TCNGA	7 cut(s)	26, 82, 285, 333, 493, 595, 602
Hpy188III	TCNNGA	2 cut(s)	434, 586
Hpy8I	GTNNAC	1 cut(s)	722
HpyAV	CCTTC	5 cut(s)	78, 193, 421, 586, 670
HpyCH4III	ACNGT	1 cut(s)	719
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	119, 142, 243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
HpyF3I	CTNAG	3 cut(s)	501, 528, 594
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	2 cut(s)	170, 712
HspAI	GCGC	4 cut(s)	149, 151, 460, 505
KflI	GGGWCCC	1 cut(s)	162
Kzo9I	GATC	6 cut(s)	301, 400, 430, 448, 597, 641
LmnI	GCTCC	5 cut(s)	4, 112, 158, 286, 667
LpnPI	CCDG	7 cut(s)	45, 236, 264, 383, 399, 447, 630
Lsp1109I	GCAGC	3 cut(s)	27, 227, 469
MaeI	CTAG	1 cut(s)	524
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	6 cut(s)	303, 402, 432, 450, 599, 643
MboI	GATC	6 cut(s)	301, 400, 430, 448, 597, 641
MfeI	CAATTG	1 cut(s)	413
MflI	RGATCY	5 cut(s)	400, 430, 448, 597, 641
MhlI	GDGCHC	1 cut(s)	534
MluCI	AATT	2 cut(s)	413, 519
MnlI	CCTC	9 cut(s)	82, 85, 88, 91, 100, 103, 138, 226, 262
MspI	CCGG	1 cut(s)	223
MunI	CAATTG	1 cut(s)	413
Mva1269I	GAATGC	1 cut(s)	691
MvnI	CGCG	2 cut(s)	151, 307
MwoI	GCNNNNNNNGC	1 cut(s)	148
NdeII	GATC	6 cut(s)	301, 400, 430, 448, 597, 641
NlaIII	CATG	2 cut(s)	170, 712
NlaIV	GGNNCC	3 cut(s)	163, 164, 432
NmeAIII	GCCGAG	1 cut(s)	233
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	1 cut(s)	712
NspV	TTCGAA	1 cut(s)	48
PauI	GCGCGC	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 304
PctI	GAATGC	1 cut(s)	691
PfeI	GAWTC	3 cut(s)	59, 314, 494
PkrI	GCNGC	3 cut(s)	17, 242, 459
Ppu21I	YACGTR	1 cut(s)	299
PpuMI	RGGWCCY	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	162
PspN4I	GGNNCC	3 cut(s)	163, 164, 432
PspPI	GGNCC	2 cut(s)	162, 697
PspPPI	RGGWCCY	1 cut(s)	162
PsuI	RGATCY	5 cut(s)	400, 430, 448, 597, 641
PteI	GCGCGC	1 cut(s)	149
RsaI	GTAC	2 cut(s)	297, 626
RsaNI	GTAC	2 cut(s)	296, 625
SatI	GCNGC	3 cut(s)	16, 241, 458
Sau3AI	GATC	6 cut(s)	301, 400, 430, 448, 597, 641
Sau96I	GGNCC	2 cut(s)	162, 697
SduI	GDGCHC	1 cut(s)	534
SfuI	TTCGAA	1 cut(s)	48
SinI	GGWCC	2 cut(s)	162, 697
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
Sse9I	AATT	2 cut(s)	413, 519
SsiI	CCGC	1 cut(s)	305
SspMI	CTAG	1 cut(s)	524
TaaI	ACNGT	1 cut(s)	719
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	2 cut(s)	48, 425
TasI	AATT	2 cut(s)	413, 519
TatI	WGTACW	1 cut(s)	624
TfiI	GAWTC	3 cut(s)	59, 314, 494
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	3 cut(s)	15, 240, 457
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	102, 486
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	2 cut(s)	162, 697
XapI	RAATTY	1 cut(s)	519
XceI	RCATGY	1 cut(s)	712
XmiI	GTMKAC	1 cut(s)	721
XspI	CTAG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.