Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007303

Physical Location & Seq

Genomic Coordinates Forward (+)

52099617 .. 52103127

Gene Structure 3511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00035800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAGCAAGCTCGCAGCACAATCGGAAAACCACTGAAGACGAAGTTCGAAGACCCCGAATCATCACCTTCCTCTTCTTCCGAAGATGAAGAGGAGGAGGAGGAGATAGAGGAGGAGCTGGCAGATGTGACATTCGGGGATTTGCAGAAGGCGCGCTCCAATGGGTCCCATGTAGTGTTGCCGAAGCCCAAAGAAGAGAAGAAGGGTGGCCGAGCAAACAAGAACCGGCCAATGGAGGTGAGCTGCAAGAAGCCTGTTAGTAGGTTTAGAGAGGTCATTCAAGCTCCGAAAAAGGTGGTACGCGATCCGCGTTTTGAATCTTTATGTGGAACTCTGAATGTTGATGGGTTTAGGAAGAGATATGATTTTTTGTTTTCAAACGAGCTTCCTGCTGAAAAGCAGGATCTAAAGAAACAATTGAAAAAATCGAAGGATCCAGAAGTCATTGAAGATCTAAAGCAGCGCATATCTTGGATTGATAAACAGCTAAAATCTGATTCATCTAAGCGCACTGAAGCTGAAATTCTAGCTGTGCACAAGAAAAAGAGAGAGAAAAAGCAAAGCAAGGAAAGCAACCCTTCTTTATCAAGAAATGTATTGTCCTCTCCCTCTCTCTCTCATACTTTTGCTGAGATCCGAAAGAAACGACTTGTTGAAAAGTACAAAAATCTCAAGGGATCTGGCAAGCTTGAAGCCTTCTTGGAGCAAAGGCGAAAGAAGAATGCTACAAAGGACCACAGATACATGCCGTACCGTAGACCTGACAACATTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRP36

Protein Analysis

258

Amino Acids

29.9

Weight (kDa)

9.6

Isoelectric Point (pI)

76.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRP36	PF06102	71 - 247	2.5e-40	rRNA biogenesis protein RRP36

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12650 AT1G12650 AT1G12650 AT1G12650
fragaria_vesca	FvH4_3g24970 FvH4_7g07500
malus_domestica	MD03G1146200.v1.1 MD11G1165500.v1.1
prunus_persica	Prupe.6G131000_v2.0.a1 Prupe.8G125000_v2.0.a1
pyrus_communis	pycom03g10060
rosa_chinensis	RchiOBHm_Chr5g0045251
rosa_laevigata	RLG00000034349
rosa_multiflora	Rmu_sc0001773.1_g000021 Rmu_sc0001773.1_g000022 Rmu_sc0007992.1_g000004
rosa_roxburghii	Rroxscaffold_1G00035800
rosa_rugosa	Rorug05G0222100
rosa_samantha	Rh5AG303200 Rh5BG311800 Rh5CG337900 Rh5DG321900
rosa_wichuraiana	Rw5G028150 Rw5G028400 Rw5G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	757
AccII	CGCG	3 cut(s)	154, 303, 310
AciI	CCGC	1 cut(s)	308
AclWI	GGATC	6 cut(s)	299, 411, 428, 441, 628, 685
AcoI	YGGCCR	2 cut(s)	208, 227
AcsI	RAATTY	1 cut(s)	522
AcuI	CTGAAG	2 cut(s)	56, 534
AfaI	GTAC	3 cut(s)	300, 662, 752
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	7 cut(s)	281, 317, 378, 421, 449, 656, 692
AluBI	AGCT	9 cut(s)	11, 118, 243, 284, 385, 487, 518, 530, 688
AluI	AGCT	9 cut(s)	11, 118, 243, 284, 385, 487, 518, 530, 688
Alw21I	GWGCWC	1 cut(s)	537
Alw44I	GTGCAC	1 cut(s)	533
AlwI	GGATC	6 cut(s)	299, 411, 428, 441, 628, 685
AoxI	GGCC	2 cut(s)	208, 227
ApaLI	GTGCAC	1 cut(s)	533
ApeKI	GCWGC	3 cut(s)	15, 243, 460
ApoI	RAATTY	1 cut(s)	522
AspLEI	GCGC	4 cut(s)	154, 156, 465, 510
AspS9I	GGNCC	2 cut(s)	165, 733
AsuHPI	GGTGA	2 cut(s)	57, 250
AsuII	TTCGAA	1 cut(s)	48
AvaII	GGWCC	2 cut(s)	165, 733
BaeGI	GKGCMC	1 cut(s)	537
BamHI	GGATCC	1 cut(s)	433
BbsI	GAAGAC	2 cut(s)	44, 57
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	3 cut(s)	27, 230, 472
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	1 cut(s)	733
BcgI	CGANNNNNNTGC	4 cut(s)	4, 38, 371, 405
BfaI	CTAG	1 cut(s)	527
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	3 cut(s)	16, 244, 461
BlsI	GCNGC	3 cut(s)	17, 245, 462
Bme18I	GGWCC	2 cut(s)	165, 733
BmgT120I	GGNCC	2 cut(s)	165, 733
BmiI	GGNNCC	3 cut(s)	166, 167, 435
BpiI	GAAGAC	2 cut(s)	44, 57
Bpu14I	TTCGAA	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	656
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	621
BsePI	GCGCGC	1 cut(s)	152
BseRI	GAGGAG	6 cut(s)	107, 110, 113, 116, 125, 128
BseSI	GKGCMC	1 cut(s)	537
BseXI	GCAGC	3 cut(s)	27, 230, 472
Bsh1236I	CGCG	3 cut(s)	154, 303, 310
BshFI	GGCC	2 cut(s)	210, 229
BsiHKAI	GWGCWC	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	2 cut(s)	210, 229
Bsp119I	TTCGAA	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	6 cut(s)	304, 403, 433, 451, 633, 677
BspACI	CCGC	1 cut(s)	308
BspANI	GGCC	2 cut(s)	210, 229
BspCNI	CTCAG	1 cut(s)	622
BspFNI	CGCG	3 cut(s)	154, 303, 310
BspLI	GGNNCC	3 cut(s)	166, 167, 435
BspPI	GGATC	6 cut(s)	299, 411, 428, 441, 628, 685
BspT104I	TTCGAA	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	225
BssHII	GCGCGC	1 cut(s)	152
BssMI	GATC	6 cut(s)	304, 403, 433, 451, 633, 677
Bst4CI	ACNGT	1 cut(s)	755
Bst6I	CTCTTC	4 cut(s)	79, 84, 189, 350
BstBI	TTCGAA	1 cut(s)	48
BstC8I	GCNNGC	5 cut(s)	9, 13, 120, 154, 686
BstDEI	CTNAG	2 cut(s)	504, 630
BstFNI	CGCG	3 cut(s)	154, 303, 310
BstHHI	GCGC	4 cut(s)	154, 156, 465, 510
BstKTI	GATC	6 cut(s)	307, 406, 436, 454, 636, 680
BstMBI	GATC	6 cut(s)	304, 403, 433, 451, 633, 677
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 570
BstNSI	RCATGY	1 cut(s)	748
BstSLI	GKGCMC	1 cut(s)	537
BstUI	CGCG	3 cut(s)	154, 303, 310
BstV1I	GCAGC	3 cut(s)	27, 230, 472
BstV2I	GAAGAC	2 cut(s)	44, 57
BstX2I	RGATCY	5 cut(s)	403, 433, 451, 633, 677
BstYI	RGATCY	5 cut(s)	403, 433, 451, 633, 677
BsuRI	GGCC	2 cut(s)	210, 229
BtsIMutI	CAGTG	2 cut(s)	32, 510
Cac8I	GCNNGC	5 cut(s)	9, 13, 120, 154, 686
CfoI	GCGC	4 cut(s)	154, 156, 465, 510
Cfr10I	RCCGGY	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	165, 733
Csp6I	GTAC	3 cut(s)	299, 661, 751
CviAII	CATG	2 cut(s)	170, 745
CviQI	GTAC	3 cut(s)	299, 661, 751
DdeI	CTNAG	2 cut(s)	504, 630
DpnI	GATC	6 cut(s)	306, 405, 435, 453, 635, 679
DpnII	GATC	6 cut(s)	304, 403, 433, 451, 633, 677
EaeI	YGGCCR	2 cut(s)	208, 227
Eam1104I	CTCTTC	4 cut(s)	79, 84, 189, 350
EarI	CTCTTC	4 cut(s)	79, 84, 189, 350
Eco47I	GGWCC	2 cut(s)	165, 733
Eco57I	CTGAAG	2 cut(s)	56, 534
EcoO109I	RGGNCCY	1 cut(s)	165
FaeI	CATG	2 cut(s)	173, 748
FaiI	YATR	6 cut(s)	171, 325, 363, 467, 621, 746
FalI	AAGNNNNNCTT	2 cut(s)	562, 594
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	2 cut(s)	169, 744
FblI	GTMKAC	1 cut(s)	757
Fnu4HI	GCNGC	3 cut(s)	16, 244, 461
Fsp4HI	GCNGC	3 cut(s)	16, 244, 461
FspBI	CTAG	1 cut(s)	527
GlaI	GCGC	4 cut(s)	153, 155, 464, 509
GluI	GCNGC	3 cut(s)	16, 244, 461
HaeIII	GGCC	2 cut(s)	210, 229
HapII	CCGG	1 cut(s)	226
HhaI	GCGC	4 cut(s)	154, 156, 465, 510
Hin1II	CATG	2 cut(s)	173, 748
Hin6I	GCGC	4 cut(s)	152, 154, 463, 508
HinP1I	GCGC	4 cut(s)	152, 154, 463, 508
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	3 cut(s)	59, 317, 497
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	2 cut(s)	57, 250
Hpy166II	GTNNAC	2 cut(s)	535, 758
Hpy188I	TCNGA	6 cut(s)	26, 82, 288, 336, 496, 638
Hpy188III	TCNNGA	2 cut(s)	437, 588
Hpy8I	GTNNAC	2 cut(s)	535, 758
HpyAV	CCTTC	6 cut(s)	78, 142, 196, 424, 588, 706
HpyCH4III	ACNGT	1 cut(s)	755
HpyCH4V	TGCA	3 cut(s)	145, 246, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 570
HpyF3I	CTNAG	2 cut(s)	504, 630
Hsp92II	CATG	2 cut(s)	173, 748
HspAI	GCGC	4 cut(s)	152, 154, 463, 508
KflI	GGGWCCC	1 cut(s)	165
Kzo9I	GATC	6 cut(s)	304, 403, 433, 451, 633, 677
LmnI	GCTCC	5 cut(s)	4, 115, 161, 289, 703
LpnPI	CCDG	7 cut(s)	104, 239, 267, 386, 402, 450, 666
Lsp1109I	GCAGC	3 cut(s)	27, 230, 472
MaeI	CTAG	1 cut(s)	527
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	6 cut(s)	306, 405, 435, 453, 635, 679
MboI	GATC	6 cut(s)	304, 403, 433, 451, 633, 677
MfeI	CAATTG	1 cut(s)	416
MflI	RGATCY	5 cut(s)	403, 433, 451, 633, 677
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	2 cut(s)	416, 522
MspI	CCGG	1 cut(s)	226
MunI	CAATTG	1 cut(s)	416
Mva1269I	GAATGC	1 cut(s)	727
MvnI	CGCG	3 cut(s)	154, 303, 310
MwoI	GCNNNNNNNGC	2 cut(s)	151, 570
NdeII	GATC	6 cut(s)	304, 403, 433, 451, 633, 677
NlaIII	CATG	2 cut(s)	173, 748
NlaIV	GGNNCC	3 cut(s)	166, 167, 435
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	1 cut(s)	748
NspV	TTCGAA	1 cut(s)	48
PauI	GCGCGC	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 307
PctI	GAATGC	1 cut(s)	727
PfeI	GAWTC	3 cut(s)	59, 317, 497
PkrI	GCNGC	3 cut(s)	17, 245, 462
PpuMI	RGGWCCY	1 cut(s)	165
Psp5II	RGGWCCY	1 cut(s)	165
PspN4I	GGNNCC	3 cut(s)	166, 167, 435
PspPI	GGNCC	2 cut(s)	165, 733
PspPPI	RGGWCCY	1 cut(s)	165
PsuI	RGATCY	5 cut(s)	403, 433, 451, 633, 677
PteI	GCGCGC	1 cut(s)	152
RsaI	GTAC	3 cut(s)	300, 662, 752
RsaNI	GTAC	3 cut(s)	299, 661, 751
SatI	GCNGC	3 cut(s)	16, 244, 461
Sau3AI	GATC	6 cut(s)	304, 403, 433, 451, 633, 677
Sau96I	GGNCC	2 cut(s)	165, 733
SduI	GDGCHC	1 cut(s)	537
SfuI	TTCGAA	1 cut(s)	48
SinI	GGWCC	2 cut(s)	165, 733
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
Sse9I	AATT	2 cut(s)	416, 522
SsiI	CCGC	1 cut(s)	308
SspMI	CTAG	1 cut(s)	527
TaaI	ACNGT	1 cut(s)	755
TaqI	TCGA	2 cut(s)	48, 428
TasI	AATT	2 cut(s)	416, 522
TatI	WGTACW	1 cut(s)	660
TfiI	GAWTC	3 cut(s)	59, 317, 497
TscAI	CASTG	2 cut(s)	39, 517
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	3 cut(s)	15, 243, 460
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	102, 489
TspRI	CASTG	2 cut(s)	39, 517
VneI	GTGCAC	1 cut(s)	533
VpaK11BI	GGWCC	2 cut(s)	165, 733
XapI	RAATTY	1 cut(s)	522
XceI	RCATGY	1 cut(s)	748
XmiI	GTMKAC	1 cut(s)	757
XspI	CTAG	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.