Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001773.1

Orthogroup ID

OG0007303

Physical Location & Seq

Genomic Coordinates Reverse (-)

140813 .. 142119

Gene Structure 1307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001773.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgcaatttttctccaggtttaggaagagatatgattttttgttttcaaacgagcttcctgctgaaaagcaggatctaaagaaacaattgaaaaaatcgaaggatccagaagtcattgaagatctaaagcagcgcatatcttggattgataaacagctaaaatctgattcatctaagcgcactgaagctgaaattctagctgagcacaagaaaaaagagagagaaaaagcaaagcaaggaaaacaacccttctttatcaagaaatctgagatccgaaagaaacgacttgttgaaaagtacaaaaatctcaagggatctggcaagcttgaagccttcttggagcaaaggcgaaagaagaatgctacaaaggaccacagatacatgccgtaccgtagacctgacaacattgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRP36

Protein Analysis

137

Amino Acids

16.7

Weight (kDa)

10.1

Isoelectric Point (pI)

67.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12650 AT1G12650 AT1G12650 AT1G12650
fragaria_vesca	FvH4_3g24970 FvH4_7g07500
malus_domestica	MD03G1146200.v1.1 MD11G1165500.v1.1
prunus_persica	Prupe.6G131000_v2.0.a1 Prupe.8G125000_v2.0.a1
pyrus_communis	pycom03g10060
rosa_chinensis	RchiOBHm_Chr5g0045251
rosa_laevigata	RLG00000034349
rosa_multiflora	Rmu_sc0001773.1_g000021 Rmu_sc0001773.1_g000022 Rmu_sc0007992.1_g000004
rosa_roxburghii	Rroxscaffold_1G00035800
rosa_rugosa	Rorug05G0222100
rosa_samantha	Rh5AG303200 Rh5BG311800 Rh5CG337900 Rh5DG321900
rosa_wichuraiana	Rw5G028150 Rw5G028400 Rw5G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	394
AclWI	GGATC	5 cut(s)	81, 98, 111, 265, 322
AcsI	RAATTY	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	2 cut(s)	299, 389
AfiI	CCNNNNNNNGG	1 cut(s)	21
AgsI	TTSAA	5 cut(s)	48, 91, 119, 293, 329
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	5 cut(s)	55, 157, 188, 200, 325
AluI	AGCT	5 cut(s)	55, 157, 188, 200, 325
Alw21I	GWGCWC	1 cut(s)	207
AlwI	GGATC	5 cut(s)	81, 98, 111, 265, 322
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	192
AspLEI	GCGC	2 cut(s)	135, 180
AspS9I	GGNCC	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	370
BamHI	GGATCC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	142
BceAI	ACGGC	1 cut(s)	370
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	1 cut(s)	16
BfaI	CTAG	1 cut(s)	197
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	1 cut(s)	131
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	16
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseMII	CTCAG	2 cut(s)	192, 258
BseXI	GCAGC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	5 cut(s)	73, 103, 121, 270, 314
Bsp1720I	GCTNAGC	1 cut(s)	201
BspCNI	CTCAG	2 cut(s)	193, 259
BspLI	GGNNCC	1 cut(s)	105
BspPI	GGATC	5 cut(s)	81, 98, 111, 265, 322
BssMI	GATC	5 cut(s)	73, 103, 121, 270, 314
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	392
Bst6I	CTCTTC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	3 cut(s)	174, 201, 267
BstHHI	GCGC	2 cut(s)	135, 180
BstKTI	GATC	5 cut(s)	76, 106, 124, 273, 317
BstMBI	GATC	5 cut(s)	73, 103, 121, 270, 314
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	142
BstX2I	RGATCY	5 cut(s)	73, 103, 121, 270, 314
BstYI	RGATCY	5 cut(s)	73, 103, 121, 270, 314
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	323
CfoI	GCGC	2 cut(s)	135, 180
Cfr13I	GGNCC	1 cut(s)	370
Csp6I	GTAC	2 cut(s)	298, 388
CviAII	CATG	1 cut(s)	382
CviJI	RGCY	6 cut(s)	55, 157, 188, 200, 325, 332
CviKI_1	RGCY	6 cut(s)	55, 157, 188, 200, 325, 332
CviQI	GTAC	2 cut(s)	298, 388
DdeI	CTNAG	3 cut(s)	174, 201, 267
DpnI	GATC	5 cut(s)	75, 105, 123, 272, 316
DpnII	GATC	5 cut(s)	73, 103, 121, 270, 314
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	14
FaeI	CATG	1 cut(s)	385
FaiI	YATR	3 cut(s)	33, 137, 383
FatI	CATG	1 cut(s)	381
FblI	GTMKAC	1 cut(s)	394
Fnu4HI	GCNGC	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	2 cut(s)	134, 179
GluI	GCNGC	1 cut(s)	131
HhaI	GCGC	2 cut(s)	135, 180
Hin1II	CATG	1 cut(s)	385
Hin6I	GCGC	2 cut(s)	133, 178
HinP1I	GCGC	2 cut(s)	133, 178
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	3 cut(s)	166, 268, 275
Hpy188III	TCNNGA	2 cut(s)	107, 259
Hpy8I	GTNNAC	1 cut(s)	395
HpyAV	CCTTC	3 cut(s)	94, 259, 343
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	3 cut(s)	174, 201, 267
Hsp92II	CATG	1 cut(s)	385
HspAI	GCGC	2 cut(s)	133, 178
Kzo9I	GATC	5 cut(s)	73, 103, 121, 270, 314
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	5 cut(s)	28, 56, 72, 120, 303
Lsp1109I	GCAGC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	197
MalI	GATC	5 cut(s)	75, 105, 123, 272, 316
MboI	GATC	5 cut(s)	73, 103, 121, 270, 314
MboII	GAAGA	3 cut(s)	37, 131, 367
MfeI	CAATTG	1 cut(s)	86
MflI	RGATCY	5 cut(s)	73, 103, 121, 270, 314
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	3 cut(s)	5, 86, 192
MspR9I	CCNGG	1 cut(s)	16
MunI	CAATTG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	16
NdeII	GATC	5 cut(s)	73, 103, 121, 270, 314
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	1 cut(s)	105
NspI	RCATGY	1 cut(s)	385
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	370
PsuI	RGATCY	5 cut(s)	73, 103, 121, 270, 314
RsaI	GTAC	2 cut(s)	299, 389
RsaNI	GTAC	2 cut(s)	298, 388
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	5 cut(s)	73, 103, 121, 270, 314
Sau96I	GGNCC	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	7 cut(s)	20, 57, 159, 190, 202, 327, 400
SinI	GGWCC	1 cut(s)	370
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	3 cut(s)	5, 86, 192
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	392
TaqI	TCGA	1 cut(s)	98
TasI	AATT	3 cut(s)	5, 86, 192
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	167
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	1 cut(s)	192
XceI	RCATGY	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	394
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.