AT1G12650

rRNA biogenesis protein RRP36

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007303
Physical Location & Seq
Forward (+)
4305791 .. 4308007
2217 bp
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UTR
Exon/CDS
Intron
AT1G12650.3

Sequence Viewer

Length: 747 bp
ATGAAAGGAGCTGGTAAGTTTGAAGGGAGCTCAAGTAAGATAGTTTTTGAGGATAGTGAAGAAGATGAAGATCTCTCGTGTTCATCTGTGTCTTCTTCAGATGAGGAAGAAGAAACAGAAAAAGAGTTAACCTTTGAGGAGATTCATAAATTACGAGCTGATGGGTCTAAAGCTGTTCCATGGAAACCAAATCAAGTGAAGAAAACAGGTCGTGCTCGTGCTAACAAAAACAGACCAATGGAAGTGAGTTCTAAGAAACCTGTGAGTCGTTATAGAGAGGTGGTTCACGTTCCAAAGAAGGAGGTTCGTGATCCTCGCTTTAACCAATTGGGTGGAACACTTGACGTCGAGGGGTTCAGGAAGCGATATAATTTCTTTTTTGAGGACAAACTTCCTGTGGAAAGAGAGGAATTGAAAAAGAAGTTAAAGAAAACAAAGAATCCAGAAGAAATCGACGAATTGAAGAACCAGTTAACTTACGTTGAGAAAATGTTGAAGTATGAGCCATCAACACAGAACAAAGGAGCAGCAATACTAACAGAACACAAAAAGAAAGAACGAGAAGCCGCAAAAGAAGGAAAAAGGCCTTACTATCTCAAAAAATCGGAAATCCGAAAGCAAACACTCATCGAAAAGTACAACAGTCTCAAGGAATCTGGGAAGCTTACATCGTATCTTGACAAACGGAGGAAGAAGAATGCAACAAAGGATCATAGGTTCATGCCCTATCGTCGAGCAGAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRP36

Protein Analysis

248

Amino Acids

29.1

Weight (kDa)

9.51

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRP36 PF06102 73 - 239 3.1e-50 rRNA biogenesis protein RRP36
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 348
AciI CCGC 1 cut(s) 567
AclWI GGATC 2 cut(s) 305, 717
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 345
AfaI GTAC 1 cut(s) 638
AgsI TTSAA 4 cut(s) 23, 415, 463, 496
AloI GAACNNNNNNTCC 2 cut(s) 701, 733
AluBI AGCT 5 cut(s) 11, 30, 158, 173, 664
AluI AGCT 5 cut(s) 11, 30, 158, 173, 664
Alw21I GWGCWC 2 cut(s) 32, 217
Alw26I GTCTC 1 cut(s) 650
AlwI GGATC 2 cut(s) 305, 717
AoxI GGCC 1 cut(s) 584
ApeKI GCWGC 1 cut(s) 527
BanII GRGCYC 1 cut(s) 32
BauI CACGAG 2 cut(s) 76, 216
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 2 cut(s) 32, 217
BbvI GCAGC 1 cut(s) 539
BccI CCATC 2 cut(s) 155, 514
BcoDI GTCTC 1 cut(s) 650
BglII AGATCT 1 cut(s) 70
BisI GCNGC 2 cut(s) 528, 567
BlsI GCNGC 2 cut(s) 529, 568
BpiI GAAGAC 1 cut(s) 84
BpuEI CTTGAG 2 cut(s) 16, 632
BsaBI GATNNNNATC 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 345
BsaJI CCNNGG 1 cut(s) 179
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bse1I ACTGG 1 cut(s) 469
Bse8I GATNNNNATC 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 179
BseJI GATNNNNATC 1 cut(s) 69
BseNI ACTGG 1 cut(s) 469
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 539
BshFI GGCC 1 cut(s) 586
BsiHKAI GWGCWC 2 cut(s) 32, 217
BsmAI GTCTC 1 cut(s) 650
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 1 cut(s) 586
Bsp1286I GDGCHC 2 cut(s) 32, 217
Bsp143I GATC 3 cut(s) 70, 310, 709
Bsp19I CCATGG 1 cut(s) 179
BspACI CCGC 1 cut(s) 567
BspANI GGCC 1 cut(s) 586
BspPI GGATC 2 cut(s) 305, 717
BsrI ACTGG 1 cut(s) 469
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 3 cut(s) 70, 310, 709
BssNI GRCGYC 1 cut(s) 345
BssSI CACGAG 2 cut(s) 76, 216
BssT1I CCWWGG 1 cut(s) 179
Bst2BI CACGAG 2 cut(s) 76, 216
Bst4CI ACNGT 1 cut(s) 644
BstACI GRCGYC 1 cut(s) 345
BstDEI CTNAG 1 cut(s) 252
BstDSI CCRYGG 1 cut(s) 179
BstKTI GATC 3 cut(s) 73, 313, 712
BstMAI GTCTC 1 cut(s) 650
BstMBI GATC 3 cut(s) 70, 310, 709
BstV1I GCAGC 1 cut(s) 539
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 332
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 1 cut(s) 586
BtgI CCRYGG 1 cut(s) 179
Csp6I GTAC 1 cut(s) 637
CviAII CATG 2 cut(s) 180, 721
CviJI RGCY 8 cut(s) 11, 30, 158, 173, 505, 566, 586, 664
CviKI_1 RGCY 8 cut(s) 11, 30, 158, 173, 505, 566, 586, 664
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 1 cut(s) 252
DpnI GATC 3 cut(s) 72, 312, 711
DpnII GATC 3 cut(s) 70, 310, 709
Ecl136II GAGCTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 179
Eco147I AGGCCT 1 cut(s) 586
Eco24I GRGCYC 1 cut(s) 32
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 2 cut(s) 183, 724
FaiI YATR 7 cut(s) 147, 181, 273, 369, 501, 714, 722
FatI CATG 2 cut(s) 179, 720
Fnu4HI GCNGC 2 cut(s) 528, 567
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 2 cut(s) 528, 567
GluI GCNGC 2 cut(s) 528, 567
HaeIII GGCC 1 cut(s) 586
Hin1I GRCGYC 1 cut(s) 345
Hin1II CATG 2 cut(s) 183, 724
HincII GTYRAC 2 cut(s) 129, 474
HindII GTYRAC 2 cut(s) 129, 474
HindIII AAGCTT 1 cut(s) 662
HinfI GANTC 4 cut(s) 142, 265, 439, 653
HpaI GTTAAC 2 cut(s) 129, 474
Hpy166II GTNNAC 3 cut(s) 129, 286, 474
Hpy188I TCNGA 3 cut(s) 100, 607, 614
Hpy188III TCNNGA 4 cut(s) 308, 358, 443, 677
Hpy8I GTNNAC 3 cut(s) 129, 286, 474
Hpy99I CGWCG 3 cut(s) 350, 458, 735
HpyAV CCTTC 3 cut(s) 17, 292, 569
HpyCH4III ACNGT 1 cut(s) 644
HpyCH4IV ACGT 3 cut(s) 288, 345, 480
HpyCH4V TGCA 1 cut(s) 701
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 3 cut(s) 288, 345, 480
Hsp92I GRCGYC 1 cut(s) 345
Hsp92II CATG 2 cut(s) 183, 724
KspAI GTTAAC 2 cut(s) 129, 474
Kzo9I GATC 3 cut(s) 70, 310, 709
LmnI GCTCC 3 cut(s) 8, 27, 524
LpnPI CCDG 7 cut(s) 192, 273, 343, 408, 456, 482, 642
Lsp1109I GCAGC 1 cut(s) 539
MaeII ACGT 3 cut(s) 288, 345, 480
MalI GATC 3 cut(s) 72, 312, 711
MboI GATC 3 cut(s) 70, 310, 709
MfeI CAATTG 1 cut(s) 326
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 2 cut(s) 32, 217
MluCI AATT 5 cut(s) 149, 326, 370, 410, 458
MlyI GAGTC 1 cut(s) 274
MseI TTAA 4 cut(s) 128, 321, 425, 473
MunI CAATTG 1 cut(s) 326
Mva1269I GAATGC 1 cut(s) 703
NcoI CCATGG 1 cut(s) 179
NdeII GATC 3 cut(s) 70, 310, 709
NlaIII CATG 2 cut(s) 183, 724
PceI AGGCCT 1 cut(s) 586
PctI GAATGC 1 cut(s) 703
PfeI GAWTC 3 cut(s) 142, 439, 653
PkrI GCNGC 2 cut(s) 529, 568
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 32
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SacI GAGCTC 1 cut(s) 32
SaqAI TTAA 4 cut(s) 128, 321, 425, 473
SatI GCNGC 2 cut(s) 528, 567
Sau3AI GATC 3 cut(s) 70, 310, 709
SchI GAGTC 1 cut(s) 274
SduI GDGCHC 2 cut(s) 32, 217
SmlI CTYRAG 2 cut(s) 31, 647
SmoI CTYRAG 2 cut(s) 31, 647
Sse9I AATT 5 cut(s) 149, 326, 370, 410, 458
SseBI AGGCCT 1 cut(s) 586
SsiI CCGC 1 cut(s) 567
SstI GAGCTC 1 cut(s) 32
StuI AGGCCT 1 cut(s) 586
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 644
TaiI ACGT 3 cut(s) 291, 348, 483
TaqI TCGA 4 cut(s) 348, 453, 630, 733
TasI AATT 5 cut(s) 149, 326, 370, 410, 458
TatI WGTACW 1 cut(s) 636
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 3 cut(s) 142, 439, 653
Tru1I TTAA 4 cut(s) 128, 321, 425, 473
Tru9I TTAA 4 cut(s) 128, 321, 425, 473
TseI GCWGC 1 cut(s) 527
TspDTI ATGAA 5 cut(s) 17, 72, 81, 134, 709
TspGWI ACGGA 1 cut(s) 700
ZraI GACGTC 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.