Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007303

Physical Location & Seq

Genomic Coordinates Reverse (-)

9046852 .. 9049919

Gene Structure 3068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g10060.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTTAAAACCTGGTACCTCGATGGGAATGCCAACCAAAACAAAGTTCGAAGAACCTGAATCTTCGTCTTCTGAGGATGAGGAGGAGATAGAGCAGGCGCTTGCAGATGTGACATTTGGGGAACTGCAGAAGGCACGCTCGAACGGGTCACATTTAGTCCACCTTAAGCCTAAAGAAGAGAAGAAGGGTGGCCGGGCGAACAAGAACCGGCCGATGGAGGTTACTTGCACGAAGCCTGTCCCTAGATTTCGAGAAGTCATTCAAGGTTCAAAAAAGGTGGTACGGGACCCACGTTTCGAATCTTTATGTGGAGAACTTGATGTTGATCGGTTTAGGAAGAAATATCGCTTTTTATTTGAGGAGGAGCTTCCTGCCGAAAAAGAGGAACTACAGAAGCAAATCAAGAAATCTAAGGACCCAGAAACCATTGAAGAACTAAAGAAACACATATCTTTGATTGATAAACAGCTAAAATCTGATTCAAAGCATACTGAAGCTGCAATACTGACTGAGCACAAGAAAAAAGAGAGGAAAGCAGCAAAGGAAGGGAAGCAACCCTTTTTCCTTAAGAAATCTGAGATCCGAAAGAAAAGACTCGTGGAGAAGTATAAACAACTCAAGGCATCTGGCAAGCTCGAAGCCTTCATTGAGAAAAGGCGCAGGAAGAATGCAGCAAAGGACCACAGATACATGCCATACCGCAGGCCCGACGCTACCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRP36

Protein Analysis

241

Amino Acids

28.04

Weight (kDa)

9.67

Isoelectric Point (pI)

65.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12650 AT1G12650 AT1G12650 AT1G12650
fragaria_vesca	FvH4_3g24970 FvH4_7g07500
malus_domestica	MD03G1146200.v1.1 MD11G1165500.v1.1
prunus_persica	Prupe.6G131000_v2.0.a1 Prupe.8G125000_v2.0.a1
pyrus_communis	pycom03g10060
rosa_chinensis	RchiOBHm_Chr5g0045251
rosa_laevigata	RLG00000034349
rosa_multiflora	Rmu_sc0001773.1_g000021 Rmu_sc0001773.1_g000022 Rmu_sc0007992.1_g000004
rosa_roxburghii	Rroxscaffold_1G00035800
rosa_rugosa	Rorug05G0222100
rosa_samantha	Rh5AG303200 Rh5BG311800 Rh5CG337900 Rh5DG321900
rosa_wichuraiana	Rw5G028150 Rw5G028400 Rw5G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	14
AccB1I	GGYRCC	1 cut(s)	14
AciI	CCGC	1 cut(s)	700
AclWI	GGATC	1 cut(s)	574
AcoI	YGGCCR	2 cut(s)	190, 209
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	2 cut(s)	16, 282
AfiI	CCNNNNNNNGG	1 cut(s)	214
AflII	CTTAAG	2 cut(s)	164, 566
AgsI	TTSAA	4 cut(s)	263, 270, 431, 483
AjnI	CCWGG	1 cut(s)	10
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AluBI	AGCT	4 cut(s)	367, 469, 497, 634
AluI	AGCT	4 cut(s)	367, 469, 497, 634
Alw21I	GWGCWC	1 cut(s)	516
AlwI	GGATC	1 cut(s)	574
AoxI	GGCC	3 cut(s)	190, 209, 704
ApeKI	GCWGC	3 cut(s)	497, 536, 671
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
Asp700I	GAANNNNTTC	1 cut(s)	258
Asp718I	GGTACC	1 cut(s)	14
AspLEI	GCGC	2 cut(s)	100, 660
AspS9I	GGNCC	4 cut(s)	286, 415, 679, 705
AsuC2I	CCSGG	1 cut(s)	194
AsuII	TTCGAA	2 cut(s)	48, 297
AvaII	GGWCC	3 cut(s)	286, 415, 679
BanI	GGYRCC	1 cut(s)	14
BarI	GAAGNNNNNNTAC	2 cut(s)	486, 518
BauI	CACGAG	1 cut(s)	596
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	516
BbvI	GCAGC	3 cut(s)	484, 548, 683
BccI	CCATC	2 cut(s)	16, 208
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciT130I	CCWGG	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	194
BfaI	CTAG	1 cut(s)	243
BfmI	CTRYAG	2 cut(s)	125, 389
BfoI	RGCGCY	1 cut(s)	101
BfrI	CTTAAG	2 cut(s)	164, 566
BisI	GCNGC	3 cut(s)	498, 537, 672
BlsI	GCNGC	3 cut(s)	499, 538, 673
Bme1390I	CCNGG	2 cut(s)	12, 194
Bme18I	GGWCC	3 cut(s)	286, 415, 679
BmgT120I	GGNCC	4 cut(s)	286, 415, 679, 705
BmiI	GGNNCC	4 cut(s)	16, 287, 288, 417
BmrFI	CCNGG	2 cut(s)	12, 194
BmsI	GCATC	1 cut(s)	632
BpiI	GAAGAC	1 cut(s)	60
Bpu14I	TTCGAA	2 cut(s)	48, 297
BpuEI	CTTGAG	1 cut(s)	602
BpuMI	CCSGG	1 cut(s)	194
BsaBI	GATNNNNATC	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse118I	RCCGGY	1 cut(s)	207
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	82
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	3 cut(s)	63, 501, 567
BseRI	GAGGAG	4 cut(s)	95, 98, 374, 377
BseX3I	CGGCCG	1 cut(s)	209
BseXI	GCAGC	3 cut(s)	484, 548, 683
Bsh1285I	CGRYCG	1 cut(s)	212
BshFI	GGCC	3 cut(s)	192, 211, 706
BshNI	GGYRCC	1 cut(s)	14
BsiEI	CGRYCG	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	516
BsiSI	CCGG	2 cut(s)	193, 208
BslFI	GGGAC	2 cut(s)	224, 299
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmFI	GGGAC	2 cut(s)	224, 299
BsmI	GAATGC	2 cut(s)	33, 673
BsnI	GGCC	3 cut(s)	192, 211, 706
Bsp119I	TTCGAA	2 cut(s)	48, 297
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	2 cut(s)	325, 579
BspACI	CCGC	1 cut(s)	700
BspANI	GGCC	3 cut(s)	192, 211, 706
BspCNI	CTCAG	3 cut(s)	64, 502, 568
BspLI	GGNNCC	4 cut(s)	16, 287, 288, 417
BspMAI	CTGCAG	1 cut(s)	129
BspPI	GGATC	1 cut(s)	574
BspT104I	TTCGAA	2 cut(s)	48, 297
BspT107I	GGYRCC	1 cut(s)	14
BspTI	CTTAAG	2 cut(s)	164, 566
BsrFI	RCCGGY	1 cut(s)	207
BssAI	RCCGGY	1 cut(s)	207
BssMI	GATC	2 cut(s)	325, 579
BssSI	CACGAG	1 cut(s)	596
Bst2BI	CACGAG	1 cut(s)	596
Bst2UI	CCWGG	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	171
BstAFI	CTTAAG	2 cut(s)	164, 566
BstBI	TTCGAA	2 cut(s)	48, 297
BstC8I	GCNNGC	5 cut(s)	96, 102, 136, 632, 704
BstDEI	CTNAG	4 cut(s)	72, 411, 510, 576
BstF5I	GGATG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	2 cut(s)	100, 660
BstKTI	GATC	2 cut(s)	328, 582
BstMBI	GATC	2 cut(s)	325, 579
BstMCI	CGRYCG	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	694
BstSCI	CCNGG	2 cut(s)	10, 192
BstSFI	CTRYAG	2 cut(s)	125, 389
BstV1I	GCAGC	3 cut(s)	484, 548, 683
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	579
BstYI	RGATCY	1 cut(s)	579
BstZI	CGGCCG	1 cut(s)	209
BsuRI	GGCC	3 cut(s)	192, 211, 706
BtsCI	GGATG	1 cut(s)	82
Cac8I	GCNNGC	5 cut(s)	96, 102, 136, 632, 704
CfoI	GCGC	2 cut(s)	100, 660
Cfr10I	RCCGGY	1 cut(s)	207
Cfr13I	GGNCC	4 cut(s)	286, 415, 679, 705
CsiI	ACCWGGT	1 cut(s)	10
Csp6I	GTAC	2 cut(s)	15, 281
CspCI	CAANNNNNGTGG	2 cut(s)	258, 293
CviAII	CATG	1 cut(s)	691
CviQI	GTAC	2 cut(s)	15, 281
DdeI	CTNAG	4 cut(s)	72, 411, 510, 576
DpnI	GATC	2 cut(s)	327, 581
DpnII	GATC	2 cut(s)	325, 579
EaeI	YGGCCR	2 cut(s)	190, 209
EagI	CGGCCG	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
EclXI	CGGCCG	1 cut(s)	209
Eco47I	GGWCC	3 cut(s)	286, 415, 679
Eco52I	CGGCCG	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	513
EcoO109I	RGGNCCY	2 cut(s)	286, 415
EcoRII	CCWGG	1 cut(s)	10
FaeI	CATG	1 cut(s)	694
FaiI	YATR	6 cut(s)	307, 449, 489, 609, 692, 697
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FaqI	GGGAC	2 cut(s)	224, 299
FatI	CATG	1 cut(s)	690
Fnu4HI	GCNGC	3 cut(s)	498, 537, 672
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	3 cut(s)	498, 537, 672
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	2 cut(s)	99, 659
GluI	GCNGC	3 cut(s)	498, 537, 672
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	3 cut(s)	192, 211, 706
HapII	CCGG	2 cut(s)	193, 208
HhaI	GCGC	2 cut(s)	100, 660
Hin1II	CATG	1 cut(s)	694
Hin6I	GCGC	2 cut(s)	98, 658
HinP1I	GCGC	2 cut(s)	98, 658
HinfI	GANTC	4 cut(s)	59, 299, 479, 594
HpaII	CCGG	2 cut(s)	193, 208
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	4 cut(s)	73, 478, 577, 584
Hpy188III	TCNNGA	2 cut(s)	251, 403
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	713
HpyAV	CCTTC	4 cut(s)	124, 178, 539, 652
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	5 cut(s)	104, 127, 228, 500, 671
HpyF3I	CTNAG	4 cut(s)	72, 411, 510, 576
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	1 cut(s)	694
HspAI	GCGC	2 cut(s)	98, 658
KflI	GGGWCCC	1 cut(s)	286
KpnI	GGTACC	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	325, 579
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	3 cut(s)	484, 548, 683
LweI	GCATC	1 cut(s)	632
MabI	ACCWGGT	1 cut(s)	10
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	3 cut(s)	109, 147, 220
MalI	GATC	2 cut(s)	327, 581
MboI	GATC	2 cut(s)	325, 579
MboII	GAAGA	8 cut(s)	54, 60, 62, 188, 193, 349, 443, 676
MflI	RGATCY	1 cut(s)	579
MhlI	GDGCHC	1 cut(s)	516
MlyI	GAGTC	1 cut(s)	588
MnlI	CCTC	9 cut(s)	28, 67, 73, 76, 211, 352, 355, 376, 522
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	3 cut(s)	5, 165, 567
MspCI	CTTAAG	2 cut(s)	164, 566
MspI	CCGG	2 cut(s)	193, 208
MspR9I	CCNGG	2 cut(s)	12, 194
Mva1269I	GAATGC	2 cut(s)	33, 673
MvaI	CCWGG	1 cut(s)	12
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	2 cut(s)	325, 579
NlaIII	CATG	1 cut(s)	694
NlaIV	GGNNCC	4 cut(s)	16, 287, 288, 417
NmuCI	GTSAC	2 cut(s)	109, 147
NspI	RCATGY	1 cut(s)	694
NspV	TTCGAA	2 cut(s)	48, 297
PcsI	WCGNNNNNNNCGW	1 cut(s)	289
PctI	GAATGC	2 cut(s)	33, 673
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	3 cut(s)	59, 299, 479
PkrI	GCNGC	3 cut(s)	499, 538, 673
PleI	GAGTC	1 cut(s)	588
PpsI	GAGTC	1 cut(s)	588
PpuMI	RGGWCCY	2 cut(s)	286, 415
Psp5II	RGGWCCY	2 cut(s)	286, 415
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
PspN4I	GGNNCC	4 cut(s)	16, 287, 288, 417
PspPI	GGNCC	4 cut(s)	286, 415, 679, 705
PspPPI	RGGWCCY	2 cut(s)	286, 415
PstI	CTGCAG	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	579
RsaI	GTAC	2 cut(s)	16, 282
RsaNI	GTAC	2 cut(s)	15, 281
SaqAI	TTAA	3 cut(s)	5, 165, 567
SatI	GCNGC	3 cut(s)	498, 537, 672
Sau3AI	GATC	2 cut(s)	325, 579
Sau96I	GGNCC	4 cut(s)	286, 415, 679, 705
SchI	GAGTC	1 cut(s)	588
ScrFI	CCNGG	2 cut(s)	12, 194
SduI	GDGCHC	1 cut(s)	516
SexAI	ACCWGGT	1 cut(s)	10
SfaNI	GCATC	1 cut(s)	632
SfcI	CTRYAG	2 cut(s)	125, 389
SfuI	TTCGAA	2 cut(s)	48, 297
SinI	GGWCC	3 cut(s)	286, 415, 679
SmlI	CTYRAG	3 cut(s)	164, 566, 617
SmoI	CTYRAG	3 cut(s)	164, 566, 617
SsiI	CCGC	1 cut(s)	700
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	10, 192
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	6 cut(s)	20, 48, 140, 250, 297, 636
TfiI	GAWTC	3 cut(s)	59, 299, 479
Tru1I	TTAA	3 cut(s)	5, 165, 567
Tru9I	TTAA	3 cut(s)	5, 165, 567
TseFI	GTSAC	2 cut(s)	109, 147
TseI	GCWGC	3 cut(s)	497, 536, 671
Tsp45I	GTSAC	2 cut(s)	109, 147
TspDTI	ATGAA	1 cut(s)	634
Vha464I	CTTAAG	2 cut(s)	164, 566
VpaK11BI	GGWCC	3 cut(s)	286, 415, 679
XceI	RCATGY	1 cut(s)	694
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.