MD00G1011600.v1.1

Protein of unknown function (DUF502)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
1411537 .. 1414013
2477 bp
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UTR
Exon/CDS
Intron
MD00G1011600.v1.1.491

Sequence Viewer

Length: 141 bp
ATGGCGAGCAGAGACAGAGTACCGCGAGATTGTGAGCTTCTCATTCCGGTGGCCGACTCCGGCGACAAAGATGCTTTGTCCAAACCCTCCTCATCTTCCTCCTCCTCCCACCACACAGGCCACGAGGTCCTGGATTTGTGA

Protein Analysis

47

Amino Acids

4.9

Weight (kDa)

5.32

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022410)

Species Orthologous Gene IDs
malus_domestica MD00G1011600.v1.1
pyrus_communis pycom02g03240 pycom02g03400
rosa_roxburghii Rroxscaffold_2G00090190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 25
AciI CCGC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 51
AfaI GTAC 1 cut(s) 21
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 6
AoxI GGCC 2 cut(s) 51, 118
AspS9I GGNCC 1 cut(s) 127
AvaII GGWCC 1 cut(s) 127
BauI CACGAG 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BciT130I CCWGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 61
BsaWI WCCGGW 1 cut(s) 46
BseBI CCWGG 1 cut(s) 131
BseRI GAGGAG 3 cut(s) 79, 91, 94
Bsh1236I CGCG 1 cut(s) 25
BshFI GGCC 2 cut(s) 53, 120
BsiSI CCGG 2 cut(s) 47, 60
BsmAI GTCTC 1 cut(s) 6
BsnI GGCC 2 cut(s) 53, 120
BspACI CCGC 1 cut(s) 23
BspANI GGCC 2 cut(s) 53, 120
BspFNI CGCG 1 cut(s) 25
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 7
BstFNI CGCG 1 cut(s) 25
BstMAI GTCTC 1 cut(s) 6
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstUI CGCG 1 cut(s) 25
BsuRI GGCC 2 cut(s) 53, 120
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 127
Csp6I GTAC 1 cut(s) 20
CviJI RGCY 3 cut(s) 37, 53, 120
CviKI_1 RGCY 3 cut(s) 37, 53, 120
CviQI GTAC 1 cut(s) 20
EaeI YGGCCR 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 127
EcoO109I RGGNCCY 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 129
HaeIII GGCC 2 cut(s) 53, 120
HapII CCGG 2 cut(s) 47, 60
HinfI GANTC 1 cut(s) 56
HpaII CCGG 2 cut(s) 47, 60
LpnPI CCDG 4 cut(s) 60, 73, 102, 116
LweI GCATC 1 cut(s) 61
MboII GAAGA 1 cut(s) 87
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 6 cut(s) 97, 100, 109, 112, 115, 118
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 2 cut(s) 47, 60
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MvnI CGCG 1 cut(s) 25
PfoI TCCNGGA 1 cut(s) 129
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PpuMI RGGWCCY 1 cut(s) 127
Psp5II RGGWCCY 1 cut(s) 127
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspPI GGNCC 1 cut(s) 127
PspPPI RGGWCCY 1 cut(s) 127
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 47
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 131
SetI ASST 2 cut(s) 39, 129
SfaNI GCATC 1 cut(s) 61
SgeI CNNG 8 cut(s) 18, 36, 38, 59, 72, 129, 134, 136
SinI GGWCC 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 47
SsiI CCGC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.