Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0022410

Physical Location & Seq

Genomic Coordinates Reverse (-)

11978165 .. 11980343

Gene Structure 2179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00090190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGCGATGAGAAGTCGTCGTCGTCGTCATCAATTGTAATAGCAAGCAGCAGAAACAAAGAACCGCGAGATCGAGAGCTTCTCATTCCCATTGCCGACTCCGGTGATGAAGACCTTTCTTCCAAACCCTCTTCGTCTTCTTTTTCCTTGCACCATCTCAGCAAAAATCCACAAGGCCAACCCAGGTTTTCTAAGCCCATATATTCACTTGAATCAAGAGAAATGGTAGAGGAAGTAGACGAATTGGAAATGGGCCGGAAGGCCGGAATGGCTGACCGGACCGGGCAGGACAAAGGAAGACATGACAAGTACAAGTTCCCTCACCGCATGATAACGGCGCCGGACGTCAAGTCGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0007389 GO:0008150 GO:0010051 GO:0010222 GO:0012505 GO:0016020 GO:0016021 GO:0031224 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

119

Amino Acids

13.29

Weight (kDa)

6.42

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022410)

Species	Orthologous Gene IDs
malus_domestica	MD00G1011600.v1.1
pyrus_communis	pycom02g03240 pycom02g03400
rosa_roxburghii	Rroxscaffold_2G00090190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	348
AccB1I	GGYRCC	1 cut(s)	337
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	67
AciI	CCGC	2 cut(s)	65, 325
AcyI	GRCGYC	2 cut(s)	338, 345
AfaI	GTAC	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	212
AhdI	GACNNNNNGTC	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
AoxI	GGCC	3 cut(s)	175, 253, 261
ApeKI	GCWGC	1 cut(s)	48
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	2 cut(s)	253, 279
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	2 cut(s)	116, 314
AvaII	GGWCC	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	337
BbsI	GAAGAC	3 cut(s)	117, 129, 304
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	1 cut(s)	162
BceAI	ACGGC	1 cut(s)	351
BciT130I	CCWGG	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	283
BfoI	RGCGCY	1 cut(s)	341
BglI	GCCNNNNNGGC	1 cut(s)	269
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
Bme1390I	CCNGG	2 cut(s)	184, 283
Bme18I	GGWCC	1 cut(s)	279
BmeRI	GACNNNNNGTC	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	253, 279
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	2 cut(s)	184, 283
BpiI	GAAGAC	3 cut(s)	117, 129, 304
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
BpuMI	CCSGG	1 cut(s)	283
BsaHI	GRCGYC	2 cut(s)	338, 345
BsaJI	CCNNGG	1 cut(s)	182
BsaWI	WCCGGW	2 cut(s)	101, 276
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	182
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	60
Bsh1236I	CGCG	1 cut(s)	67
BshFI	GGCC	3 cut(s)	177, 255, 263
BshNI	GGYRCC	1 cut(s)	337
BsiSI	CCGG	6 cut(s)	102, 256, 264, 277, 282, 341
BsnI	GGCC	3 cut(s)	177, 255, 263
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	2 cut(s)	65, 325
BspANI	GGCC	3 cut(s)	177, 255, 263
BspCNI	CTCAG	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	339
BspT107I	GGYRCC	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	1 cut(s)	70
BssNI	GRCGYC	2 cut(s)	338, 345
Bst2UI	CCWGG	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	136
BstACI	GRCGYC	2 cut(s)	338, 345
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	158, 192
BstFNI	CGCG	1 cut(s)	67
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	2 cut(s)	182, 281
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	60
BstV2I	GAAGAC	3 cut(s)	117, 129, 304
BsuRI	GGCC	3 cut(s)	177, 255, 263
BtgZI	GCGATG	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	253, 279
CpoI	CGGWCCG	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	310
CspI	CGGWCCG	1 cut(s)	279
CviAII	CATG	2 cut(s)	302, 328
CviJI	RGCY	6 cut(s)	79, 177, 196, 255, 263, 272
CviKI_1	RGCY	6 cut(s)	79, 177, 196, 255, 263, 272
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	2 cut(s)	158, 192
DinI	GGCGCC	1 cut(s)	339
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
DriI	GACNNNNNGTC	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	136
Eam1105I	GACNNNNNGTC	1 cut(s)	349
EarI	CTCTTC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	182
EgeI	GGCGCC	1 cut(s)	339
EheI	GGCGCC	1 cut(s)	339
FaeI	CATG	2 cut(s)	305, 331
FaiI	YATR	4 cut(s)	200, 202, 303, 329
FatI	CATG	2 cut(s)	301, 327
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	49
Fsp4HI	GCNGC	1 cut(s)	49
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	1 cut(s)	49
HaeII	RGCGCY	1 cut(s)	341
HaeIII	GGCC	3 cut(s)	177, 255, 263
HapII	CCGG	6 cut(s)	102, 256, 264, 277, 282, 341
HhaI	GCGC	1 cut(s)	340
Hin1I	GRCGYC	2 cut(s)	338, 345
Hin1II	CATG	2 cut(s)	305, 331
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HinfI	GANTC	2 cut(s)	98, 212
HpaII	CCGG	6 cut(s)	102, 256, 264, 277, 282, 341
HphI	GGTGA	2 cut(s)	116, 314
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188III	TCNNGA	2 cut(s)	74, 216
Hpy8I	GTNNAC	1 cut(s)	238
Hpy99I	CGWCG	3 cut(s)	22, 25, 28
HpyAV	CCTTC	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	2 cut(s)	158, 192
HpySE526I	ACGT	1 cut(s)	345
Hsp92I	GRCGYC	2 cut(s)	338, 345
Hsp92II	CATG	2 cut(s)	305, 331
HspAI	GCGC	1 cut(s)	338
KasI	GGCGCC	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	70
LpnPI	CCDG	9 cut(s)	115, 169, 196, 269, 272, 277, 290, 295, 354
Lsp1109I	GCAGC	1 cut(s)	60
MaeII	ACGT	1 cut(s)	345
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	5 cut(s)	111, 122, 123, 129, 309
MfeI	CAATTG	1 cut(s)	33
MluCI	AATT	2 cut(s)	33, 242
Mly113I	GGCGCC	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	3 cut(s)	139, 223, 330
MspI	CCGG	6 cut(s)	102, 256, 264, 277, 282, 341
MspR9I	CCNGG	2 cut(s)	184, 283
MunI	CAATTG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	184
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	1 cut(s)	269
NarI	GGCGCC	1 cut(s)	338
NciI	CCSGG	1 cut(s)	283
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	305, 331
NlaIV	GGNNCC	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	50
PleI	GAGTC	1 cut(s)	92
PluTI	GGCGCC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	2 cut(s)	253, 279
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
Rsr2I	CGGWCCG	1 cut(s)	279
RsrII	CGGWCCG	1 cut(s)	279
SatI	GCNGC	1 cut(s)	49
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	2 cut(s)	253, 279
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	184, 283
SetI	ASST	4 cut(s)	81, 117, 188, 348
SfoI	GGCGCC	1 cut(s)	339
SinI	GGWCC	1 cut(s)	279
Sse9I	AATT	2 cut(s)	33, 242
SsiI	CCGC	2 cut(s)	65, 325
SspDI	GGCGCC	1 cut(s)	337
StyD4I	CCNGG	2 cut(s)	182, 281
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	2 cut(s)	73, 353
TasI	AATT	2 cut(s)	33, 242
TatI	WGTACW	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	212
TseI	GCWGC	1 cut(s)	48
TspDTI	ATGAA	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	279
XmiI	GTMKAC	1 cut(s)	237
ZraI	GACGTC	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.