Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0022410

Physical Location & Seq

Genomic Coordinates Forward (+)

2254707 .. 2255421

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCACGTAATGATCCGGCTAGCAGAAACAGAGAAGCGCGATCGTGAGCTTCTCATTCCGGTGGCGGACTACGGCGACCAAGATGCATCGTCCAAACCCTCCTCGTCTTCCTCCTCCTCCTACCGTACCGGCCGCGAGATCAAACAATTGATTCGGGTATATCTAAGCATTTCTACAAGAAATTTAGTGACATCGTTGCGTTTTACTTTTAGTCAGTTTAAAGGTGTCCCTGCTGCATTATACCACTGGTATGCACGTAAAAATTTGTCCAGTAAGTCAGCGGTAATTTATCAAGAACCGGTTAGAGTGTGTCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0007389 GO:0008150 GO:0010051 GO:0010222 GO:0012505 GO:0016020 GO:0016021 GO:0031224 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

107

Amino Acids

12.1

Weight (kDa)

9.86

Isoelectric Point (pI)

54.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022410)

Species	Orthologous Gene IDs
malus_domestica	MD00G1011600.v1.1
pyrus_communis	pycom02g03240 pycom02g03400
rosa_roxburghii	Rroxscaffold_2G00090190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	39, 135
AciI	CCGC	3 cut(s)	65, 133, 281
AclWI	GGATC	1 cut(s)	7
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	181, 262
AfaI	GTAC	1 cut(s)	127
AgeI	ACCGGT	1 cut(s)	298
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
AlwI	GGATC	1 cut(s)	7
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	2 cut(s)	181, 262
AsiGI	ACCGGT	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	39
AsuNHI	GCTAGC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	220
BceAI	ACGGC	1 cut(s)	88
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BfaI	CTAG	1 cut(s)	20
BisI	GCNGC	2 cut(s)	133, 234
BlsI	GCNGC	2 cut(s)	134, 235
BmsI	GCATC	2 cut(s)	73, 95
BmtI	GCTAGC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	99
BsaAI	YACGTR	2 cut(s)	7, 257
BsaWI	WCCGGW	2 cut(s)	58, 298
Bse118I	RCCGGY	2 cut(s)	128, 298
Bse1I	ACTGG	2 cut(s)	251, 270
BseNI	ACTGG	2 cut(s)	251, 270
BseRI	GAGGAG	3 cut(s)	91, 103, 106
BseX3I	CGGCCG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	220
Bsh1236I	CGCG	2 cut(s)	39, 135
Bsh1285I	CGRYCG	2 cut(s)	43, 133
BshFI	GGCC	1 cut(s)	132
BshTI	ACCGGT	1 cut(s)	298
BsiEI	CGRYCG	2 cut(s)	43, 133
BsiSI	CCGG	4 cut(s)	16, 59, 129, 299
BslFI	GGGAC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	12, 40, 138
BspACI	CCGC	3 cut(s)	65, 133, 281
BspANI	GGCC	1 cut(s)	132
BspFNI	CGCG	2 cut(s)	39, 135
BspOI	GCTAGC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	7
BsrFI	RCCGGY	2 cut(s)	128, 298
BsrI	ACTGG	2 cut(s)	251, 270
BssAI	RCCGGY	2 cut(s)	128, 298
BssMI	GATC	3 cut(s)	12, 40, 138
Bst4CI	ACNGT	1 cut(s)	125
BstBAI	YACGTR	2 cut(s)	7, 257
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	164
BstFNI	CGCG	2 cut(s)	39, 135
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	3 cut(s)	15, 43, 141
BstMBI	GATC	3 cut(s)	12, 40, 138
BstMCI	CGRYCG	2 cut(s)	43, 133
BstUI	CGCG	2 cut(s)	39, 135
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	1 cut(s)	99
BstZI	CGGCCG	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	1 cut(s)	39
Cfr10I	RCCGGY	2 cut(s)	128, 298
Csp6I	GTAC	1 cut(s)	126
CspAI	ACCGGT	1 cut(s)	298
CviJI	RGCY	3 cut(s)	19, 49, 132
CviKI_1	RGCY	3 cut(s)	19, 49, 132
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	3 cut(s)	14, 42, 140
DpnII	GATC	3 cut(s)	12, 40, 138
DraI	TTTAAA	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	130
EagI	CGGCCG	1 cut(s)	130
EciI	GGCGGA	1 cut(s)	80
EclXI	CGGCCG	1 cut(s)	130
Eco52I	CGGCCG	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	88
FaiI	YATR	3 cut(s)	160, 241, 252
FaqI	GGGAC	1 cut(s)	212
Fnu4HI	GCNGC	2 cut(s)	133, 234
Fsp4HI	GCNGC	2 cut(s)	133, 234
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	2 cut(s)	133, 234
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	4 cut(s)	16, 59, 129, 299
HhaI	GCGC	1 cut(s)	39
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	4 cut(s)	16, 59, 129, 299
Hpy188III	TCNNGA	2 cut(s)	44, 293
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	2 cut(s)	6, 256
HpyCH4V	TGCA	4 cut(s)	4, 86, 236, 254
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	2 cut(s)	6, 256
HspAI	GCGC	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	12, 40, 138
LpnPI	CCDG	7 cut(s)	29, 72, 142, 232, 243, 283, 312
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	2 cut(s)	73, 95
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	2 cut(s)	6, 256
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	3 cut(s)	14, 42, 140
MboI	GATC	3 cut(s)	12, 40, 138
MboII	GAAGA	1 cut(s)	99
MfeI	CAATTG	1 cut(s)	146
MluCI	AATT	4 cut(s)	146, 181, 262, 285
MnlI	CCTC	5 cut(s)	109, 112, 121, 124, 127
Mph1103I	ATGCAT	1 cut(s)	88
MseI	TTAA	1 cut(s)	219
MslI	CAYNNNNRTG	2 cut(s)	59, 249
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	4 cut(s)	16, 59, 129, 299
MunI	CAATTG	1 cut(s)	146
MvnI	CGCG	2 cut(s)	39, 135
NdeII	GATC	3 cut(s)	12, 40, 138
NheI	GCTAGC	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	187
NsiI	ATGCAT	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	151
PinAI	ACCGGT	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	134, 235
Ple19I	CGATCG	1 cut(s)	43
Ppu21I	YACGTR	2 cut(s)	7, 257
PvuI	CGATCG	1 cut(s)	43
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
RseI	CAYNNNNRTG	2 cut(s)	59, 249
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	2 cut(s)	133, 234
Sau3AI	GATC	3 cut(s)	12, 40, 138
SetI	ASST	4 cut(s)	9, 51, 226, 259
SfaNI	GCATC	2 cut(s)	73, 95
SmiMI	CAYNNNNRTG	2 cut(s)	59, 249
Sse9I	AATT	4 cut(s)	146, 181, 262, 285
SsiI	CCGC	3 cut(s)	65, 133, 281
SspMI	CTAG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	2 cut(s)	9, 259
TasI	AATT	4 cut(s)	146, 181, 262, 285
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	1 cut(s)	251
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	187
TspRI	CASTG	1 cut(s)	251
XapI	RAATTY	2 cut(s)	181, 262
XspI	CTAG	1 cut(s)	20
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.