Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0022411

Physical Location & Seq

Genomic Coordinates Forward (+)

3702596 .. 3704499

Gene Structure 1904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1020100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCACAGGCACCATCACGTGCAAACAACACCGCTGCTTGGAATCAAAGAGGGTGCGGTCATGATGACGTCTCTGAGTAAGGAGCTCGTGTTCCTGATCTTGCAGTTTCTGGATGAGGAAAAATTCAAAGAGACTATTCTCCACAGGCTAGAGCAGGAATCTGGGGTTTTCTTCAATACGAAATATTTTGAGGATGAGGTGCATAATGGCAATTGGGATGAAGTTGAGAACTACCTCTCTGGGTTCACTAAAATGGAAGATAACAGTTATTCCATGAAAATCTTTTTCAAGATAAGGAAGCAGAAGTATCTCGAGGCATTGGACAAGCATGATTGGTCCCAAGCCTTGGATATTCTAGTAAAGGATTTAAAGTTTTTTGCCACATTCGATGAACTTTCGGGGGAAATCGCTCAGCTTTCGACATTGGAGAATGAACAACCATCCAAGTATGGAGATTCAAAGTCTGCCAGGGCAATCATGTCGGTTGAACTTAAGAAACTGATTGAAGCAAATCCCTTATTCAGTGATAAATTTCAGTTCCCAAACTTAAAGCGTTCGAGGCTACGTACTCTCATTAACCAAGGCATAAGCTTTTGTAAGAATCCAAGTCCAGATCTAGTTATAGAAACACTTTATGTGGACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

216

Amino Acids

25.11

Weight (kDa)

5.68

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_TPL	PF17814	26 - 56	3.8e-11	LisH-like dimerisation domain
TPR1-like_2nd	PF21889	59 - 177	1.3e-47	TPR1-like, CTLH-containing domain
zf_topless	PF21359	181 - 215	1.8e-08	TOPLESS, zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0022411)

Species	Orthologous Gene IDs
malus_domestica	MD00G1020100.v1.1 MD00G1021500.v1.1 MD00G1021600.v1.1
pyrus_communis	pycom01g24250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	346
AciI	CCGC	2 cut(s)	32, 56
AcsI	RAATTY	2 cut(s)	122, 530
AcvI	CACGTG	1 cut(s)	19
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	1 cut(s)	568
AfiI	CCNNNNNNNGG	2 cut(s)	38, 346
AflII	CTTAAG	1 cut(s)	491
AgsI	TTSAA	6 cut(s)	127, 175, 289, 459, 488, 506
AjnI	CCWGG	1 cut(s)	467
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
AluBI	AGCT	3 cut(s)	85, 415, 591
AluI	AGCT	3 cut(s)	85, 415, 591
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	2 cut(s)	75, 125
AlwNI	CAGNNNCTG	1 cut(s)	109
Ama87I	CYCGRG	1 cut(s)	311
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	2 cut(s)	122, 530
AspS9I	GGNCC	1 cut(s)	336
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	336
BanI	GGYRCC	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	87
BauI	CACGAG	1 cut(s)	86
BbrPI	CACGTG	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	2 cut(s)	21, 448
BcgI	CGANNNNNNTGC	2 cut(s)	462, 496
BciT130I	CCWGG	1 cut(s)	469
BcoDI	GTCTC	2 cut(s)	75, 125
BfaI	CTAG	3 cut(s)	149, 356, 617
BfrI	CTTAAG	1 cut(s)	491
BglII	AGATCT	1 cut(s)	613
BisI	GCNGC	1 cut(s)	35
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	336
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	2 cut(s)	11, 338
BmrFI	CCNGG	1 cut(s)	469
Bpu1102I	GCTNAGC	1 cut(s)	411
BsaAI	YACGTR	2 cut(s)	19, 566
BsaHI	GRCGYC	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	345, 468, 580
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 346
BseBI	CCWGG	1 cut(s)	469
BseDI	CCNNGG	3 cut(s)	345, 468, 580
BseGI	GGATG	4 cut(s)	118, 199, 223, 440
BseLI	CCNNNNNNNGG	2 cut(s)	38, 346
BseMII	CTCAG	2 cut(s)	65, 425
BseXI	GCAGC	1 cut(s)	21
BshNI	GGYRCC	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	2 cut(s)	38, 346
BsmAI	GTCTC	2 cut(s)	75, 125
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	322
BsoBI	CYCGRG	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	96, 613
Bsp1720I	GCTNAGC	1 cut(s)	411
BspACI	CCGC	2 cut(s)	32, 56
BspCNI	CTCAG	2 cut(s)	66, 424
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	11, 338
BspT107I	GGYRCC	1 cut(s)	9
BspTI	CTTAAG	1 cut(s)	491
BssECI	CCNNGG	3 cut(s)	345, 468, 580
BssMI	GATC	2 cut(s)	96, 613
BssNI	GRCGYC	1 cut(s)	68
BssSI	CACGAG	1 cut(s)	86
BssT1I	CCWWGG	2 cut(s)	345, 580
Bst2BI	CACGAG	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	469
Bst4CI	ACNGT	1 cut(s)	266
BstACI	GRCGYC	1 cut(s)	68
BstAFI	CTTAAG	1 cut(s)	491
BstBAI	YACGTR	2 cut(s)	19, 566
BstDEI	CTNAG	2 cut(s)	74, 411
BstF5I	GGATG	4 cut(s)	118, 199, 223, 440
BstKTI	GATC	2 cut(s)	99, 616
BstMAI	GTCTC	2 cut(s)	75, 125
BstMBI	GATC	2 cut(s)	96, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	559
BstNI	CCWGG	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	467
BstSNI	TACGTA	1 cut(s)	566
BstV1I	GCAGC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BtsCI	GGATG	4 cut(s)	118, 199, 223, 440
BtsIMutI	CAGTG	1 cut(s)	529
CaiI	CAGNNNCTG	1 cut(s)	109
CciI	TCATGA	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	4 cut(s)	61, 274, 329, 478
CviJI	RGCY	6 cut(s)	85, 148, 344, 415, 562, 591
CviKI_1	RGCY	6 cut(s)	85, 148, 344, 415, 562, 591
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	2 cut(s)	74, 411
DpnI	GATC	2 cut(s)	98, 615
DpnII	GATC	2 cut(s)	96, 613
DraI	TTTAAA	1 cut(s)	369
Ecl136II	GAGCTC	1 cut(s)	85
Eco105I	TACGTA	1 cut(s)	566
Eco130I	CCWWGG	2 cut(s)	345, 580
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	336
Eco53kI	GAGCTC	1 cut(s)	85
Eco72I	CACGTG	1 cut(s)	19
Eco88I	CYCGRG	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	467
EcoT14I	CCWWGG	2 cut(s)	345, 580
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	2 cut(s)	345, 580
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	4 cut(s)	64, 277, 332, 481
FaiI	YATR	9 cut(s)	62, 204, 275, 330, 450, 479, 587, 623, 636
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	4 cut(s)	60, 273, 328, 477
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	4 cut(s)	125, 206, 230, 427
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	3 cut(s)	149, 356, 617
GluI	GCNGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	4 cut(s)	64, 277, 332, 481
HindIII	AAGCTT	1 cut(s)	589
HinfI	GANTC	4 cut(s)	42, 158, 455, 601
Hpy166II	GTNNAC	2 cut(s)	246, 640
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	6 cut(s)	61, 94, 110, 289, 311, 611
Hpy8I	GTNNAC	2 cut(s)	246, 640
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	3 cut(s)	18, 68, 565
HpyCH4V	TGCA	4 cut(s)	4, 22, 103, 202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	559
HpyF3I	CTNAG	2 cut(s)	74, 411
HpySE526I	ACGT	3 cut(s)	18, 68, 565
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	4 cut(s)	64, 277, 332, 481
Kzo9I	GATC	2 cut(s)	96, 613
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	9 cut(s)	95, 107, 130, 140, 147, 225, 454, 481, 624
Lsp1109I	GCAGC	1 cut(s)	21
MaeI	CTAG	3 cut(s)	149, 356, 617
MaeII	ACGT	3 cut(s)	18, 68, 565
MalI	GATC	2 cut(s)	98, 615
MboI	GATC	2 cut(s)	96, 613
MboII	GAAGA	2 cut(s)	163, 269
MfeI	CAATTG	1 cut(s)	211
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	3 cut(s)	122, 211, 530
MnlI	CCTC	7 cut(s)	43, 109, 184, 190, 245, 307, 552
MseI	TTAA	4 cut(s)	368, 492, 548, 576
MslI	CAYNNNNRTG	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	34
MspCI	CTTAAG	1 cut(s)	491
MspR9I	CCNGG	1 cut(s)	469
MunI	CAATTG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	469
MwoI	GCNNNNNNNGC	1 cut(s)	559
NdeII	GATC	2 cut(s)	96, 613
NlaIII	CATG	4 cut(s)	64, 277, 332, 481
NlaIV	GGNNCC	2 cut(s)	11, 338
PaeR7I	CTCGAG	1 cut(s)	311
PagI	TCATGA	1 cut(s)	60
PfeI	GAWTC	4 cut(s)	42, 158, 455, 601
PflMI	CCANNNNNTGG	1 cut(s)	346
PkrI	GCNGC	1 cut(s)	36
PmaCI	CACGTG	1 cut(s)	19
PmlI	CACGTG	1 cut(s)	19
Ppu21I	YACGTR	2 cut(s)	19, 566
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	467
PspCI	CACGTG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	467
PspN4I	GGNNCC	2 cut(s)	11, 338
PspPI	GGNCC	1 cut(s)	336
PstNI	CAGNNNCTG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	613
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
RseI	CAYNNNNRTG	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	4 cut(s)	368, 492, 548, 576
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	2 cut(s)	96, 613
Sau96I	GGNCC	1 cut(s)	336
ScrFI	CCNGG	1 cut(s)	469
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	8 cut(s)	21, 71, 87, 201, 237, 417, 568, 593
Sfr274I	CTCGAG	1 cut(s)	311
SinI	GGWCC	1 cut(s)	336
SlaI	CTCGAG	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	2 cut(s)	311, 491
SmoI	CTYRAG	2 cut(s)	311, 491
SnaBI	TACGTA	1 cut(s)	566
Sse9I	AATT	3 cut(s)	122, 211, 530
SsiI	CCGC	2 cut(s)	32, 56
SspI	AATATT	1 cut(s)	185
SspMI	CTAG	3 cut(s)	149, 356, 617
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	467
StyI	CCWWGG	2 cut(s)	345, 580
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	3 cut(s)	21, 71, 568
TaqI	TCGA	4 cut(s)	312, 387, 419, 557
TasI	AATT	3 cut(s)	122, 211, 530
TfiI	GAWTC	4 cut(s)	42, 158, 455, 601
Tru1I	TTAA	4 cut(s)	368, 492, 548, 576
Tru9I	TTAA	4 cut(s)	368, 492, 548, 576
TscAI	CASTG	1 cut(s)	529
TseI	GCWGC	1 cut(s)	34
TspDTI	ATGAA	4 cut(s)	234, 290, 405, 447
TspRI	CASTG	1 cut(s)	529
Van91I	CCANNNNNTGG	1 cut(s)	346
Vha464I	CTTAAG	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	336
XapI	RAATTY	2 cut(s)	122, 530
XhoI	CTCGAG	1 cut(s)	311
XspI	CTAG	3 cut(s)	149, 356, 617
ZraI	GACGTC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.