Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0022411

Physical Location & Seq

Genomic Coordinates Forward (+)

3773456 .. 3775546

Gene Structure 2091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1021500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAAATATTTTGAGGATGAGGTGCATAATGGCAATTGGGATGAAGTTGAGAAGCACCACTCCAGGTTCACTAAATTGGAAGATGACAGCTATTCCATGAAAATCTTTTTCGAGATAAGGAAGCAGAAGTATCTCGAGGCATTGGACAAGGAGAATGAACAACTATCCAAGTGTGGAGATTCAAAGTCTGCCAGGGCAATCATGTTGGTTGAACTTAAGAAACTGATTGAAGCGAATCCCTTATTCAGTGATAAATTGCAGCTTTGTAAAAACCCAAGTCCAAATCCAGTTGTAAAAACACTTTATGTGGATCACCCATGTGGACAACCAAACTGTGCGCGGGCACCATCACCTGCAAACAACCCGCTTCTTGGAATCAAACAAGGGGCGGTCAAGATGTTGTCTCTGAGTATGGAGCTTGTGTTCCTGATCTTGCAGCTTCTCGATGAGGGAAACTTCAAAGAGACTATTCATAAGCTAAAGCAGGAATCTGGGGTTTTCTTCAACATGAAATATTTTGAGGATGAGGTGCATAATGGCAATTGGGATGAAGTTGAAGTACCTCTCTGGGTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

193

Amino Acids

22.23

Weight (kDa)

5.67

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR1-like_2nd	PF21889	1 - 52	8.3e-21	TPR1-like, CTLH-containing domain
TPR1-like_2nd	PF21889	50 - 86	3e-09	TPR1-like, CTLH-containing domain
zf_topless	PF21359	87 - 107	2.2e-06	TOPLESS, zinc finger domain
LisH_TPL	PF17814	137 - 166	8.7e-09	LisH-like dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022411)

Species	Orthologous Gene IDs
malus_domestica	MD00G1020100.v1.1 MD00G1021500.v1.1 MD00G1021600.v1.1
pyrus_communis	pycom01g24250

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	361
Acc36I	ACCTGC	1 cut(s)	361
AccB1I	GGYRCC	1 cut(s)	343
AccII	CGCG	1 cut(s)	340
AciI	CCGC	3 cut(s)	340, 365, 389
AclWI	GGATC	1 cut(s)	318
AfaI	GTAC	1 cut(s)	561
AfiI	CCNNNNNNNGG	1 cut(s)	371
AflII	CTTAAG	1 cut(s)	215
AgsI	TTSAA	6 cut(s)	183, 212, 230, 460, 505, 557
AjnI	CCWGG	2 cut(s)	62, 191
AleI	CACNNNNGTG	1 cut(s)	318
AloI	GAACNNNNNNTCC	2 cut(s)	407, 439
AluBI	AGCT	5 cut(s)	90, 262, 418, 439, 478
AluI	AGCT	5 cut(s)	90, 262, 418, 439, 478
Alw26I	GTCTC	2 cut(s)	408, 458
AlwI	GGATC	1 cut(s)	318
Ama87I	CYCGRG	1 cut(s)	134
ApeKI	GCWGC	2 cut(s)	259, 436
AspLEI	GCGC	1 cut(s)	340
AsuHPI	GGTGA	2 cut(s)	305, 342
AvaI	CYCGRG	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	343
BarI	GAAGNNNNNNTAC	2 cut(s)	543, 575
BbvI	GCAGC	2 cut(s)	271, 448
BccI	CCATC	1 cut(s)	355
BciT130I	CCWGG	2 cut(s)	64, 193
BcoDI	GTCTC	2 cut(s)	408, 458
BfrI	CTTAAG	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	361
BisI	GCNGC	2 cut(s)	260, 437
BlsI	GCNGC	2 cut(s)	261, 438
Bme1390I	CCNGG	2 cut(s)	64, 193
BmeT110I	CYCGRG	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	2 cut(s)	64, 193
BpmI	CTGGAG	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	287
BseBI	CCWGG	2 cut(s)	64, 193
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	4 cut(s)	22, 46, 529, 553
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	2 cut(s)	271, 448
Bsh1236I	CGCG	1 cut(s)	340
BshNI	GGYRCC	1 cut(s)	343
BsiHKCI	CYCGRG	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	2 cut(s)	408, 458
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	310, 429
BspACI	CCGC	3 cut(s)	340, 365, 389
BspCNI	CTCAG	1 cut(s)	399
BspFNI	CGCG	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	345
BspMI	ACCTGC	1 cut(s)	361
BspPI	GGATC	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	343
BspTI	CTTAAG	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	2 cut(s)	310, 429
Bst2UI	CCWGG	2 cut(s)	64, 193
Bst4CI	ACNGT	1 cut(s)	335
BstAFI	CTTAAG	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	1 cut(s)	407
BstF5I	GGATG	4 cut(s)	22, 46, 529, 553
BstFNI	CGCG	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	2 cut(s)	313, 432
BstMAI	GTCTC	2 cut(s)	408, 458
BstMBI	GATC	2 cut(s)	310, 429
BstNI	CCWGG	2 cut(s)	64, 193
BstSCI	CCNGG	2 cut(s)	62, 191
BstSLI	GKGCMC	1 cut(s)	346
BstUI	CGCG	1 cut(s)	340
BstV1I	GCAGC	2 cut(s)	271, 448
BtsCI	GGATG	4 cut(s)	22, 46, 529, 553
BtsIMutI	CAGTG	1 cut(s)	253
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	342
CfoI	GCGC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	560
CviAII	CATG	4 cut(s)	97, 202, 318, 508
CviJI	RGCY	5 cut(s)	90, 262, 418, 439, 478
CviKI_1	RGCY	5 cut(s)	90, 262, 418, 439, 478
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	2 cut(s)	312, 431
DpnII	GATC	2 cut(s)	310, 429
Eco88I	CYCGRG	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	62, 191
FaeI	CATG	4 cut(s)	100, 205, 321, 511
FaiI	YATR	9 cut(s)	27, 98, 203, 306, 319, 413, 474, 509, 534
FatI	CATG	4 cut(s)	96, 201, 317, 507
FauI	CCCGC	2 cut(s)	333, 372
Fnu4HI	GCNGC	2 cut(s)	260, 437
FokI	GGATG	4 cut(s)	29, 53, 536, 560
Fsp4HI	GCNGC	2 cut(s)	260, 437
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	2 cut(s)	260, 437
GsuI	CTGGAG	1 cut(s)	46
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	4 cut(s)	100, 205, 321, 511
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HinfI	GANTC	4 cut(s)	179, 235, 375, 488
HphI	GGTGA	2 cut(s)	305, 342
Hpy166II	GTNNAC	3 cut(s)	69, 323, 574
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	5 cut(s)	112, 134, 394, 427, 443
Hpy8I	GTNNAC	3 cut(s)	69, 323, 574
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4V	TGCA	5 cut(s)	25, 259, 356, 436, 532
HpyF3I	CTNAG	1 cut(s)	407
Hsp92II	CATG	4 cut(s)	100, 205, 321, 511
HspAI	GCGC	1 cut(s)	338
Kzo9I	GATC	2 cut(s)	310, 429
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	2 cut(s)	271, 448
MalI	GATC	2 cut(s)	312, 431
MboI	GATC	2 cut(s)	310, 429
MboII	GAAGA	2 cut(s)	92, 493
MfeI	CAATTG	2 cut(s)	34, 541
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	4 cut(s)	34, 74, 254, 541
MnlI	CCTC	7 cut(s)	7, 13, 130, 442, 514, 520, 573
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	318
MspCI	CTTAAG	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	64, 193
MunI	CAATTG	2 cut(s)	34, 541
MvaI	CCWGG	2 cut(s)	64, 193
MvnI	CGCG	1 cut(s)	340
NdeII	GATC	2 cut(s)	310, 429
NlaIII	CATG	4 cut(s)	100, 205, 321, 511
NlaIV	GGNNCC	1 cut(s)	345
OliI	CACNNNNGTG	1 cut(s)	318
PaeR7I	CTCGAG	1 cut(s)	134
PaqCI	CACCTGC	1 cut(s)	361
PfeI	GAWTC	4 cut(s)	179, 235, 375, 488
PkrI	GCNGC	2 cut(s)	261, 438
Psp6I	CCWGG	2 cut(s)	62, 191
PspGI	CCWGG	2 cut(s)	62, 191
PspN4I	GGNNCC	1 cut(s)	345
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	2 cut(s)	260, 437
Sau3AI	GATC	2 cut(s)	310, 429
ScrFI	CCNGG	2 cut(s)	64, 193
SduI	GDGCHC	1 cut(s)	346
Sfr274I	CTCGAG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	2 cut(s)	134, 215
SmoI	CTYRAG	2 cut(s)	134, 215
Sse9I	AATT	4 cut(s)	34, 74, 254, 541
SsiI	CCGC	3 cut(s)	340, 365, 389
SspI	AATATT	2 cut(s)	8, 515
StyD4I	CCNGG	2 cut(s)	62, 191
TaaI	ACNGT	1 cut(s)	335
TaqI	TCGA	3 cut(s)	111, 135, 444
TasI	AATT	4 cut(s)	34, 74, 254, 541
TfiI	GAWTC	4 cut(s)	179, 235, 375, 488
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	2 cut(s)	259, 436
TspDTI	ATGAA	7 cut(s)	17, 57, 113, 171, 461, 524, 564
TspRI	CASTG	1 cut(s)	253
Vha464I	CTTAAG	1 cut(s)	215
XhoI	CTCGAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.