Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0022411

Physical Location & Seq

Genomic Coordinates Forward (+)

3775548 .. 3776147

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1021600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAGAATGCCATTGTATGAAGGGGGAGTGAACAACTATCCAAATACGGAGATACAAAGGTCTGCCAGGGTAATCATGTCGGTTGAACTTAAGAAACTGATTGAAGCGAATCCCTTATTCAGTGATAAATTGCAGTTCCCAAACATTAAGCGTTCGAGGCTAAAGGATTTCATTAACCAAGGCTTAAATTGGCAGCATAAGCTTTGTAAGAACCGAAGTCCAGATATAGTTATAGAAACACTTTATGTGGACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

86

Amino Acids

9.99

Weight (kDa)

9.46

Isoelectric Point (pI)

61.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_topless	PF21359	47 - 85	2.5e-16	TOPLESS, zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022411)

Species	Orthologous Gene IDs
malus_domestica	MD00G1020100.v1.1 MD00G1021500.v1.1 MD00G1021600.v1.1
pyrus_communis	pycom01g24250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflII	CTTAAG	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	86, 104
AjnI	CCWGG	1 cut(s)	65
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	193
BaeI	ACNNNNGTAYC	2 cut(s)	44, 77
BbvI	GCAGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	67
BfrI	CTTAAG	1 cut(s)	89
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	66, 178
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	2 cut(s)	66, 178
BseXI	GCAGC	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	66, 178
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	67
BstAFI	CTTAAG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 199
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	127
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	3 cut(s)	160, 183, 202
CviKI_1	RGCY	3 cut(s)	160, 183, 202
Eco130I	CCWWGG	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	1 cut(s)	79
FaiI	YATR	6 cut(s)	18, 77, 198, 227, 233, 246
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	194
GluI	GCNGC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	31, 250
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	2 cut(s)	31, 250
HpyAV	CCTTC	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	133
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 199
Hsp92II	CATG	1 cut(s)	79
LpnPI	CCDG	3 cut(s)	52, 79, 234
Lsp1109I	GCAGC	1 cut(s)	205
MluCI	AATT	2 cut(s)	128, 187
MnlI	CCTC	1 cut(s)	150
MseI	TTAA	4 cut(s)	90, 147, 174, 185
MspCI	CTTAAG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	67
Mva1269I	GAATGC	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	2 cut(s)	157, 199
NlaIII	CATG	1 cut(s)	79
PctI	GAATGC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
SaqAI	TTAA	4 cut(s)	90, 147, 174, 185
SatI	GCNGC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	67
SetI	ASST	2 cut(s)	62, 204
SgeI	CNNG	6 cut(s)	78, 79, 88, 168, 191, 233
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	128, 187
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	178
TaqI	TCGA	1 cut(s)	155
TasI	AATT	2 cut(s)	128, 187
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	4 cut(s)	90, 147, 174, 185
Tru9I	TTAA	4 cut(s)	90, 147, 174, 185
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	33, 160
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	127
Vha464I	CTTAAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.