Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0022333

Physical Location & Seq

Genomic Coordinates Forward (+)

3969378 .. 3970213

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1024100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTATGATCAAATGAATGTTGAGGATGAACTTTATCCATTTCGACCGATGAACTGCCCCTATCATATCTTGGTTTACAATAGGAAGCCTCACTCATATCATGAATTTCCTATTCGAGTTACTGAGTTGGGAGCCGTATATAGACACGAATTATCTGGAAGCTTGCCCGGTCTTTTTCGTGTAAGAGGTTTTACTCAGGATGATGCCCACATATTTTGTCTAGAAGATCAGATCAAAGATGAAATTAGGGGTGTCCTAGATCTTACCGAAGAACTTTTGTTGCAATTCGGCTTCAGAAAATATGAGGTCAATCTCTCTACGAGGCCAGAGAAAGTTGTTGGAGATGATGATATATGGGTGAAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon tRNA-synt_2b tRNA_SAD

Protein Analysis

123

Amino Acids

14.48

Weight (kDa)

5.14

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	9 - 113	6.7e-26	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0022333)

Species	Orthologous Gene IDs
malus_domestica	MD00G1024100.v1.1 MD15G1401600.v1.1
pyrus_communis	pycom05g23920 pycom05g24170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	277
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
AoxI	GGCC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	168
BceAI	ACGGC	1 cut(s)	119
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	168
BfaI	CTAG	2 cut(s)	221, 257
BglII	AGATCT	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	193
BpuMI	CCSGG	1 cut(s)	168
BseGI	GGATG	2 cut(s)	31, 205
BseMII	CTCAG	2 cut(s)	114, 209
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	325
BsiEI	CGRYCG	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	168
BsnI	GGCC	1 cut(s)	325
Bsp143I	GATC	4 cut(s)	7, 226, 231, 259
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	2 cut(s)	115, 208
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	133
BssMI	GATC	4 cut(s)	7, 226, 231, 259
Bst4CI	ACNGT	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	123, 195
BstF5I	GGATG	2 cut(s)	31, 205
BstKTI	GATC	4 cut(s)	10, 229, 234, 262
BstMBI	GATC	4 cut(s)	7, 226, 231, 259
BstMCI	CGRYCG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	325
BtsCI	GGATG	2 cut(s)	31, 205
Cac8I	GCNNGC	1 cut(s)	164
CciI	TCATGA	1 cut(s)	100
CspCI	CAANNNNNGTGG	2 cut(s)	197, 232
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	5 cut(s)	88, 134, 162, 291, 325
CviKI_1	RGCY	5 cut(s)	88, 134, 162, 291, 325
DdeI	CTNAG	2 cut(s)	123, 195
DpnI	GATC	4 cut(s)	9, 228, 233, 261
DpnII	GATC	4 cut(s)	7, 226, 231, 259
Eco57I	CTGAAG	1 cut(s)	277
FaeI	CATG	1 cut(s)	104
FatI	CATG	1 cut(s)	100
FbaI	TGATCA	1 cut(s)	7
FokI	GGATG	2 cut(s)	38, 212
FspBI	CTAG	2 cut(s)	221, 257
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	1 cut(s)	104
HindIII	AAGCTT	1 cut(s)	160
HpaII	CCGG	1 cut(s)	168
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	231, 296
Hpy188III	TCNNGA	4 cut(s)	101, 156, 197, 221
Hpy8I	GTNNAC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4V	TGCA	1 cut(s)	283
HpyF3I	CTNAG	2 cut(s)	123, 195
Hsp92II	CATG	1 cut(s)	104
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	4 cut(s)	7, 226, 231, 259
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	4 cut(s)	141, 181, 182, 339
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	2 cut(s)	221, 257
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	4 cut(s)	9, 228, 233, 261
MboI	GATC	4 cut(s)	7, 226, 231, 259
MboII	GAAGA	2 cut(s)	236, 281
MflI	RGATCY	1 cut(s)	259
MluCI	AATT	4 cut(s)	104, 149, 243, 284
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	5 cut(s)	16, 99, 179, 298, 315
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	168
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	4 cut(s)	7, 226, 231, 259
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	133
PagI	TCATGA	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	259
Sau3AI	GATC	4 cut(s)	7, 226, 231, 259
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	3 cut(s)	164, 190, 309
SfaNI	GCATC	1 cut(s)	193
Sse9I	AATT	4 cut(s)	104, 149, 243, 284
SspMI	CTAG	2 cut(s)	221, 257
StyD4I	CCNGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	366
TaqI	TCGA	2 cut(s)	43, 115
TaqII	GACCGA	1 cut(s)	61
TasI	AATT	4 cut(s)	104, 149, 243, 284
TspDTI	ATGAA	5 cut(s)	29, 42, 65, 117, 255
XapI	RAATTY	1 cut(s)	104
XbaI	TCTAGA	1 cut(s)	220
XspI	CTAG	2 cut(s)	221, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.