Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0022333

Physical Location & Seq

Genomic Coordinates Forward (+)

25768457 .. 25768889

Gene Structure 433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAAGATTTGTGGAAAAAGATCCACATAGAGTGTGGTTATGATCTGCTGTATACTCCACATGTTGCAAAGGCGAACCTTTGGCAGATAAGTGGTCATCTGGATTACTACAAGGAGAATGTGTATGATCAAATGAATGTTGAGGATGAACTTTATCAGCTTCGACTGATGAACTGCCCCTTTCATATCTTGGTTTACAAAAGGAAGCCTCACTCATATCATGAATTTCCTATTCAAGTTGCTGAGTTGGGAGCCGTATATAGATACGAATTATCTGGAAGCTTGCATGGTCTTTTTCGTGTAAGAGGTTTTACTCAGGATGATGCCGCATATTTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon tRNA-synt_2b tRNA_SAD

Protein Analysis

114

Amino Acids

13.5

Weight (kDa)

5.92

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	48 - 113	1.4e-13	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0022333)

Species	Orthologous Gene IDs
malus_domestica	MD00G1024100.v1.1 MD15G1401600.v1.1
pyrus_communis	pycom05g23920 pycom05g24170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	53
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	1 cut(s)	224
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	236
AluBI	AGCT	2 cut(s)	160, 282
AluI	AGCT	2 cut(s)	160, 282
AlwI	GGATC	1 cut(s)	16
ApoI	RAATTY	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	239
BclI	TGATCA	1 cut(s)	127
BfaI	CTAG	1 cut(s)	340
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	253
BmsI	GCATC	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
BseGI	GGATG	2 cut(s)	151, 325
BseMII	CTCAG	2 cut(s)	234, 329
Bsp143I	GATC	3 cut(s)	21, 43, 127
BspACI	CCGC	1 cut(s)	327
BspCNI	CTCAG	2 cut(s)	235, 328
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	1 cut(s)	16
BssMI	GATC	3 cut(s)	21, 43, 127
BssNAI	GTATAC	1 cut(s)	54
Bst1107I	GTATAC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	2 cut(s)	243, 315
BstF5I	GGATG	2 cut(s)	151, 325
BstKTI	GATC	3 cut(s)	24, 46, 130
BstMBI	GATC	3 cut(s)	21, 43, 127
BstNSI	RCATGY	1 cut(s)	65
BstX2I	RGATCY	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	21
BstZ17I	GTATAC	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	151, 325
Cac8I	GCNNGC	1 cut(s)	284
CciI	TCATGA	1 cut(s)	220
CviAII	CATG	3 cut(s)	62, 221, 287
CviJI	RGCY	4 cut(s)	160, 208, 254, 282
CviKI_1	RGCY	4 cut(s)	160, 208, 254, 282
DdeI	CTNAG	2 cut(s)	243, 315
DpnI	GATC	3 cut(s)	23, 45, 129
DpnII	GATC	3 cut(s)	21, 43, 127
FaeI	CATG	3 cut(s)	65, 224, 290
FatI	CATG	3 cut(s)	61, 220, 286
FbaI	TGATCA	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	2 cut(s)	158, 332
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	340
GluI	GCNGC	1 cut(s)	327
Hin1II	CATG	3 cut(s)	65, 224, 290
HindIII	AAGCTT	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	54, 196
Hpy188III	TCNNGA	4 cut(s)	101, 221, 276, 317
Hpy8I	GTNNAC	2 cut(s)	54, 196
HpyCH4V	TGCA	2 cut(s)	68, 286
HpyF3I	CTNAG	2 cut(s)	243, 315
Hsp92II	CATG	3 cut(s)	65, 224, 290
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	21, 43, 127
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	3 cut(s)	86, 261, 302
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	340
MalI	GATC	3 cut(s)	23, 45, 129
MboI	GATC	3 cut(s)	21, 43, 127
MboII	GAAGA	1 cut(s)	17
MflI	RGATCY	1 cut(s)	21
MluCI	AATT	2 cut(s)	224, 269
MnlI	CCTC	3 cut(s)	136, 219, 299
NdeII	GATC	3 cut(s)	21, 43, 127
NlaIII	CATG	3 cut(s)	65, 224, 290
NlaIV	GGNNCC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	65
PagI	TCATGA	1 cut(s)	220
PciI	ACATGT	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	328
PscI	ACATGT	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	21
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	3 cut(s)	21, 43, 127
SetI	ASST	4 cut(s)	81, 162, 284, 310
SfaNI	GCATC	1 cut(s)	313
Sse9I	AATT	2 cut(s)	224, 269
SsiI	CCGC	1 cut(s)	327
SspMI	CTAG	1 cut(s)	340
TaqI	TCGA	1 cut(s)	163
TasI	AATT	2 cut(s)	224, 269
TauI	GCSGC	1 cut(s)	329
TspDTI	ATGAA	5 cut(s)	149, 162, 173, 185, 237
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	1 cut(s)	65
XcmI	CCANNNNNNNNNTGG	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	53
XspI	CTAG	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.