Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0022333

Physical Location & Seq

Genomic Coordinates Forward (+)

50249299 .. 50249883

Gene Structure 585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1401600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGGATTCTTGCATTGAACATTTTCATTGTTGAATTTTCACAGAATGATGCTGGTGGTGGTTTAGTGTTCTGGCATCCAAAGGGTGCTATTGTGAGGCATATAAGTGGTCATCTGGATTACTACAAGGAGAATATGTATGATCAAATGAATGTTGAGGATGAACTTTATCAGCTTCGACCGATGAACTGCCCCTATCATATCTTGGTTTACAGAAAGAAGCCTTACTCATATCATGAATTTCCTATTCAAGTTGTTGAGTTGGGAACCGTTTATAGATACGAATTATCTGGAAGCTTGCATGGTCTTTTTCGTGTAAGAGGTTTTACTCAGGATGATGCCCACATATTTTTTCAAGAAGATCAGATCAAAGATGAAATTAAGGGTGTCCTAGATCTTACCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon tRNA-synt_2b tRNA_SAD

Protein Analysis

136

Amino Acids

15.93

Weight (kDa)

5.59

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	53 - 134	1.8e-22	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022333)

Species	Orthologous Gene IDs
malus_domestica	MD00G1024100.v1.1 MD15G1401600.v1.1
pyrus_communis	pycom05g23920 pycom05g24170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	35, 239
AgsI	TTSAA	4 cut(s)	19, 35, 251, 356
AluBI	AGCT	2 cut(s)	175, 297
AluI	AGCT	2 cut(s)	175, 297
ApoI	RAATTY	2 cut(s)	35, 239
Asp700I	GAANNNNTTC	1 cut(s)	23
BclI	TGATCA	1 cut(s)	142
BfaI	CTAG	1 cut(s)	392
BglII	AGATCT	1 cut(s)	394
BmiI	GGNNCC	1 cut(s)	268
BmsI	GCATC	3 cut(s)	40, 85, 328
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
BseGI	GGATG	3 cut(s)	76, 166, 340
BseMII	CTCAG	1 cut(s)	344
Bsh1285I	CGRYCG	1 cut(s)	182
BsiEI	CGRYCG	1 cut(s)	182
Bsp143I	GATC	4 cut(s)	142, 361, 366, 394
BspCNI	CTCAG	1 cut(s)	343
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	268
BssMI	GATC	4 cut(s)	142, 361, 366, 394
Bst4CI	ACNGT	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	3 cut(s)	76, 166, 340
BstKTI	GATC	4 cut(s)	145, 364, 369, 397
BstMBI	GATC	4 cut(s)	142, 361, 366, 394
BstMCI	CGRYCG	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BtsCI	GGATG	3 cut(s)	76, 166, 340
Cac8I	GCNNGC	1 cut(s)	299
CciI	TCATGA	1 cut(s)	235
CviAII	CATG	2 cut(s)	236, 302
CviJI	RGCY	3 cut(s)	175, 223, 297
CviKI_1	RGCY	3 cut(s)	175, 223, 297
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	4 cut(s)	144, 363, 368, 396
DpnII	GATC	4 cut(s)	142, 361, 366, 394
FaeI	CATG	2 cut(s)	239, 305
FatI	CATG	2 cut(s)	235, 301
FbaI	TGATCA	1 cut(s)	142
FokI	GGATG	3 cut(s)	63, 173, 347
FspBI	CTAG	1 cut(s)	392
Hin1II	CATG	2 cut(s)	239, 305
HindIII	AAGCTT	1 cut(s)	295
HinfI	GANTC	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	366
Hpy188III	TCNNGA	5 cut(s)	116, 236, 291, 332, 356
Hpy8I	GTNNAC	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	2 cut(s)	14, 301
HpyF3I	CTNAG	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	239, 305
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	142, 361, 366, 394
LpnPI	CCDG	5 cut(s)	39, 58, 101, 276, 317
LweI	GCATC	3 cut(s)	40, 85, 328
MaeI	CTAG	1 cut(s)	392
MalI	GATC	4 cut(s)	144, 363, 368, 396
MboI	GATC	4 cut(s)	142, 361, 366, 394
MboII	GAAGA	1 cut(s)	371
MflI	RGATCY	1 cut(s)	394
MluCI	AATT	4 cut(s)	35, 239, 284, 378
MnlI	CCTC	3 cut(s)	90, 151, 314
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	105
NdeII	GATC	4 cut(s)	142, 361, 366, 394
NlaIII	CATG	2 cut(s)	239, 305
NlaIV	GGNNCC	1 cut(s)	268
PagI	TCATGA	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	381
Sau3AI	GATC	4 cut(s)	142, 361, 366, 394
SetI	ASST	3 cut(s)	177, 299, 325
SfaNI	GCATC	3 cut(s)	40, 85, 328
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	4 cut(s)	35, 239, 284, 378
SspMI	CTAG	1 cut(s)	392
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	178
TaqII	GACCGA	1 cut(s)	196
TasI	AATT	4 cut(s)	35, 239, 284, 378
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TspDTI	ATGAA	6 cut(s)	16, 164, 177, 200, 252, 390
XapI	RAATTY	2 cut(s)	35, 239
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.