MD00G1026700.v1.1

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0022412
Physical Location & Seq
Reverse (-)
4508582 .. 4509157
576 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1026700.v1.1.491

Sequence Viewer

Length: 576 bp
ATGTACCTCTTTCTTTCCCCTCTTGTTGTCGTTATCGCTGCCCAGATTTCAACATTTTCTCTCAAGGATCTTTATGATCTTTGGGAGCACCTCCAGTACAACCTGATTTCGGTGATTATCTGCTCGACTCTCCTTGTTTTCCTATCCACCGTGTACTTTGTCACCCGCCCTCGCCCGGTGTACCTTGTTAACTTTTCGTTCTACAAGCCAGAAGAATCTCGAAAATGCACGAAAAAGATTTTCATGGAACAGTCTCAGATGACTGGTACATTTACAGAGGACAATCTTCAGTTCCAGCGTAGGATCCTTAAGAGATCCGGCCTTGGTGACTCGACTTACCTTCCCGAGGCAGTTCTCAACATTCCTCCAAATCCGTCAATGAAAGAAGCTAGAAAAGAAGCTGAGGCTGTGATGCTTGGTGCCATTGATGAGCTTTTCGCTAAGACAGCTGTTAAACATAAGGACTTTGGAATCTTGATTGTGAACTGCAGTTTGTTCAATCCTACCCCGTCTCTTTCTGCCATGGTTATCAATCATTACCAGCTTCGAGGGAACATAAAATTTGCACAACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

192

Amino Acids

21.86

Weight (kDa)

8.94

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 52 - 187 1.2e-53 FAE1/Type III polyketide synthase-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022412)

Species Orthologous Gene IDs
malus_domestica MD00G1026700.v1.1
pyrus_communis pycom02g03160 pycom15g10690
rosa_multiflora Rmu_co8061556.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 419
AciI CCGC 1 cut(s) 166
AclWI GGATC 4 cut(s) 75, 298, 309, 311
AcsI RAATTY 1 cut(s) 560
AcuI CTGAAG 1 cut(s) 272
AfaI GTAC 5 cut(s) 5, 98, 155, 182, 268
AfiI CCNNNNNNNGG 3 cut(s) 109, 175, 346
AflII CTTAAG 1 cut(s) 308
AgsI TTSAA 2 cut(s) 51, 499
AluBI AGCT 5 cut(s) 389, 401, 433, 449, 544
AluI AGCT 5 cut(s) 389, 401, 433, 449, 544
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 2 cut(s) 258, 516
AlwI GGATC 4 cut(s) 75, 298, 309, 311
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 1 cut(s) 319
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 560
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 3 cut(s) 124, 154, 338
AvaI CYCGRG 1 cut(s) 344
BamHI GGATCC 1 cut(s) 303
BanI GGYRCC 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 90
BbvCI CCTCAGC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 25
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 258, 516
BfaI CTAG 1 cut(s) 390
BfmI CTRYAG 1 cut(s) 487
BfrI CTTAAG 1 cut(s) 308
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 344
BmiI GGNNCC 2 cut(s) 305, 421
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 1 cut(s) 402
BpmI CTGGAG 1 cut(s) 77
Bpu10I CCTNAGC 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 176
BsaJI CCNNGG 3 cut(s) 322, 345, 522
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 175, 346
Bse1I ACTGG 2 cut(s) 94, 268
BseDI CCNNGG 3 cut(s) 322, 345, 522
BseLI CCNNNNNNNGG 3 cut(s) 109, 175, 346
BseMII CTCAG 2 cut(s) 269, 393
BseNI ACTGG 2 cut(s) 94, 268
BseXI GCAGC 1 cut(s) 25
BshFI GGCC 1 cut(s) 321
BshNI GGYRCC 1 cut(s) 419
BsiHKAI GWGCWC 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 2 cut(s) 176, 318
BslI CCNNNNNNNGG 3 cut(s) 109, 175, 346
BsmAI GTCTC 2 cut(s) 258, 516
BsmBI CGTCTC 1 cut(s) 516
BsnI GGCC 1 cut(s) 321
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 4 cut(s) 67, 76, 303, 314
Bsp19I CCATGG 1 cut(s) 522
BspACI CCGC 1 cut(s) 166
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 2 cut(s) 268, 394
BspLI GGNNCC 2 cut(s) 305, 421
BspMAI CTGCAG 1 cut(s) 491
BspPI GGATC 4 cut(s) 75, 298, 309, 311
BspT107I GGYRCC 1 cut(s) 419
BspTI CTTAAG 1 cut(s) 308
BsrI ACTGG 2 cut(s) 94, 268
BssECI CCNNGG 3 cut(s) 322, 345, 522
BssMI GATC 4 cut(s) 67, 76, 303, 314
BssT1I CCWWGG 2 cut(s) 322, 522
Bst4CI ACNGT 2 cut(s) 151, 252
BstAFI CTTAAG 1 cut(s) 308
BstDEI CTNAG 3 cut(s) 255, 402, 441
BstDSI CCRYGG 1 cut(s) 522
BstENI CCTNNNNNAGG 1 cut(s) 344
BstKTI GATC 4 cut(s) 70, 79, 306, 317
BstMAI GTCTC 2 cut(s) 258, 516
BstMBI GATC 4 cut(s) 67, 76, 303, 314
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 487
BstV1I GCAGC 1 cut(s) 25
BstX2I RGATCY 3 cut(s) 67, 303, 314
BstYI RGATCY 3 cut(s) 67, 303, 314
BsuRI GGCC 1 cut(s) 321
BtgI CCRYGG 1 cut(s) 522
Csp6I GTAC 5 cut(s) 4, 97, 154, 181, 267
CviAII CATG 2 cut(s) 244, 523
CviJI RGCY 8 cut(s) 208, 321, 389, 401, 407, 433, 449, 544
CviKI_1 RGCY 8 cut(s) 208, 321, 389, 401, 407, 433, 449, 544
CviQI GTAC 5 cut(s) 4, 97, 154, 181, 267
DdeI CTNAG 3 cut(s) 255, 402, 441
DpnI GATC 4 cut(s) 69, 78, 305, 316
DpnII GATC 4 cut(s) 67, 76, 303, 314
Eco130I CCWWGG 2 cut(s) 322, 522
Eco57I CTGAAG 1 cut(s) 272
Eco88I CYCGRG 1 cut(s) 344
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoT14I CCWWGG 2 cut(s) 322, 522
ErhI CCWWGG 2 cut(s) 322, 522
Esp3I CGTCTC 1 cut(s) 516
FaeI CATG 2 cut(s) 247, 526
FaiI YATR 5 cut(s) 75, 245, 459, 524, 557
FatI CATG 2 cut(s) 243, 522
FauI CCCGC 1 cut(s) 173
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 1 cut(s) 390
GluI GCNGC 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 1 cut(s) 321
HapII CCGG 2 cut(s) 176, 318
Hin1II CATG 2 cut(s) 247, 526
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 4 cut(s) 127, 215, 329, 471
HpaI GTTAAC 1 cut(s) 190
HpaII CCGG 2 cut(s) 176, 318
HphI GGTGA 3 cut(s) 124, 154, 338
Hpy166II GTNNAC 4 cut(s) 154, 181, 190, 484
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 3 cut(s) 219, 344, 475
Hpy8I GTNNAC 4 cut(s) 154, 181, 190, 484
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 2 cut(s) 151, 252
HpyCH4V TGCA 3 cut(s) 228, 489, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 3 cut(s) 255, 402, 441
Hsp92II CATG 2 cut(s) 247, 526
KspAI GTTAAC 1 cut(s) 190
Kzo9I GATC 4 cut(s) 67, 76, 303, 314
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 9 cut(s) 56, 107, 116, 189, 222, 249, 308, 331, 554
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 402
MaeI CTAG 1 cut(s) 390
MaeIII GTNAC 2 cut(s) 160, 326
MalI GATC 4 cut(s) 69, 78, 305, 316
MboI GATC 4 cut(s) 67, 76, 303, 314
MboII GAAGA 2 cut(s) 224, 278
MflI RGATCY 3 cut(s) 67, 303, 314
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 1 cut(s) 560
MlyI GAGTC 2 cut(s) 121, 323
MnlI CCTC 9 cut(s) 17, 30, 101, 180, 271, 340, 375, 397, 542
MseI TTAA 3 cut(s) 189, 309, 453
MspA1I CMGCKG 1 cut(s) 449
MspCI CTTAAG 1 cut(s) 308
MspI CCGG 2 cut(s) 176, 318
MspR9I CCNGG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 446
NciI CCSGG 1 cut(s) 176
NcoI CCATGG 1 cut(s) 522
NdeII GATC 4 cut(s) 67, 76, 303, 314
NlaIII CATG 2 cut(s) 247, 526
NlaIV GGNNCC 2 cut(s) 305, 421
NmuCI GTSAC 2 cut(s) 160, 326
PfeI GAWTC 2 cut(s) 215, 471
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 2 cut(s) 121, 323
PpsI GAGTC 2 cut(s) 121, 323
PspN4I GGNNCC 2 cut(s) 305, 421
PstI CTGCAG 1 cut(s) 491
PsuI RGATCY 3 cut(s) 67, 303, 314
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 5 cut(s) 5, 98, 155, 182, 268
RsaNI GTAC 5 cut(s) 4, 97, 154, 181, 267
SaqAI TTAA 3 cut(s) 189, 309, 453
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 4 cut(s) 67, 76, 303, 314
SchI GAGTC 2 cut(s) 121, 323
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 90
SfaNI GCATC 1 cut(s) 402
SfcI CTRYAG 1 cut(s) 487
SmlI CTYRAG 2 cut(s) 62, 308
SmoI CTYRAG 2 cut(s) 62, 308
Sse9I AATT 1 cut(s) 560
SsiI CCGC 1 cut(s) 166
SspMI CTAG 1 cut(s) 390
StyD4I CCNGG 1 cut(s) 174
StyI CCWWGG 2 cut(s) 322, 522
TaaI ACNGT 2 cut(s) 151, 252
TaqI TCGA 4 cut(s) 125, 220, 332, 547
TasI AATT 1 cut(s) 560
TatI WGTACW 2 cut(s) 96, 153
TfiI GAWTC 2 cut(s) 215, 471
Tru1I TTAA 3 cut(s) 189, 309, 453
Tru9I TTAA 3 cut(s) 189, 309, 453
TseFI GTSAC 2 cut(s) 160, 326
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 2 cut(s) 160, 326
TspDTI ATGAA 2 cut(s) 232, 395
TspGWI ACGGA 1 cut(s) 363
Vha464I CTTAAG 1 cut(s) 308
XagI CCTNNNNNAGG 1 cut(s) 344
XapI RAATTY 1 cut(s) 560
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.