Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8061556.1

Orthogroup ID

OG0022412

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 464

Gene Structure 463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8061556.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 463 bp

atggcggagccaaaaccagatacacccttgatcccaccatcatctacaccctcatccaatcggaacctccccgacttcaaaaaatccattaagctaaaatatgtgaagcttggttaccatattctcatcacccatggaatgtacctttttctttcccctctcgtggttgttattgctgcccaactctcaacattttcgctccaagatctttatgatctttgggagcatctccaatacaacctgatttcggtgattatctgctcgaccctcctggtgttcctatccactgtctactttcttacccgccctcgccctgtgtaccttgttaacttctcctgttacaagccagaagaaactcgaaaatgcaccaaaaagatctttatggaacagtctaagatgactggtacattctcagaggagaatctacagttccagagaaggatccttgagagatccggccttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

154

Amino Acids

17.86

Weight (kDa)

9.28

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022412)

Species	Orthologous Gene IDs
malus_domestica	MD00G1026700.v1.1
pyrus_communis	pycom02g03160 pycom15g10690
rosa_multiflora	Rmu_co8061556.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	291
AciI	CCGC	2 cut(s)	5, 304
AclWI	GGATC	4 cut(s)	25, 436, 447, 449
AfaI	GTAC	3 cut(s)	143, 320, 406
AfiI	CCNNNNNNNGG	2 cut(s)	163, 247
AgsI	TTSAA	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	2 cut(s)	94, 109
AluI	AGCT	2 cut(s)	94, 109
AlwI	GGATC	4 cut(s)	25, 436, 447, 449
AoxI	GGCC	1 cut(s)	457
ApeKI	GCWGC	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	121, 262
BamHI	GGATCC	1 cut(s)	441
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BauI	CACGAG	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	425
BglII	AGATCT	2 cut(s)	205, 375
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	272
BmiI	GGNNCC	3 cut(s)	9, 65, 443
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 247
Bse1I	ACTGG	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	2 cut(s)	163, 247
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	163
BshFI	GGCC	1 cut(s)	459
BsiSI	CCGG	1 cut(s)	456
BslI	CCNNNNNNNGG	2 cut(s)	163, 247
BsnI	GGCC	1 cut(s)	459
Bsp143I	GATC	6 cut(s)	30, 205, 214, 375, 441, 452
Bsp19I	CCATGG	1 cut(s)	133
BspACI	CCGC	2 cut(s)	5, 304
BspANI	GGCC	1 cut(s)	459
BspCNI	CTCAG	1 cut(s)	425
BspLI	GGNNCC	3 cut(s)	9, 65, 443
BspPI	GGATC	4 cut(s)	25, 436, 447, 449
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	6 cut(s)	30, 205, 214, 375, 441, 452
BssSI	CACGAG	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	133
Bst2BI	CACGAG	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	3 cut(s)	289, 390, 429
BstDEI	CTNAG	2 cut(s)	393, 412
BstDSI	CCRYGG	1 cut(s)	133
BstEII	GGTNACC	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	53
BstKTI	GATC	6 cut(s)	33, 208, 217, 378, 444, 455
BstMBI	GATC	6 cut(s)	30, 205, 214, 375, 441, 452
BstNI	CCWGG	1 cut(s)	272
BstPI	GGTNACC	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	425
BstV1I	GCAGC	1 cut(s)	163
BstX2I	RGATCY	4 cut(s)	205, 375, 441, 452
BstYI	RGATCY	4 cut(s)	205, 375, 441, 452
BsuRI	GGCC	1 cut(s)	459
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	285
Csp6I	GTAC	3 cut(s)	142, 319, 405
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	5 cut(s)	10, 94, 109, 346, 459
CviKI_1	RGCY	5 cut(s)	10, 94, 109, 346, 459
CviQI	GTAC	3 cut(s)	142, 319, 405
DdeI	CTNAG	2 cut(s)	393, 412
DpnI	GATC	6 cut(s)	32, 207, 216, 377, 443, 454
DpnII	GATC	6 cut(s)	30, 205, 214, 375, 441, 452
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	133
Eco91I	GGTNACC	1 cut(s)	113
EcoO65I	GGTNACC	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	1 cut(s)	137
FaiI	YATR	5 cut(s)	102, 120, 135, 213, 383
FatI	CATG	1 cut(s)	133
FauI	CCCGC	1 cut(s)	311
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	459
HapII	CCGG	1 cut(s)	456
Hin1II	CATG	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	421
HpaI	GTTAAC	1 cut(s)	328
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	2 cut(s)	121, 262
Hpy166II	GTNNAC	3 cut(s)	292, 319, 328
Hpy188I	TCNGA	2 cut(s)	63, 415
Hpy188III	TCNNGA	1 cut(s)	433
Hpy8I	GTNNAC	3 cut(s)	292, 319, 328
HpyAV	CCTTC	1 cut(s)	432
HpyCH4III	ACNGT	3 cut(s)	289, 390, 429
HpyCH4V	TGCA	1 cut(s)	366
HpyF3I	CTNAG	2 cut(s)	393, 412
Hsp92II	CATG	1 cut(s)	137
KspAI	GTTAAC	1 cut(s)	328
Kzo9I	GATC	6 cut(s)	30, 205, 214, 375, 441, 452
LmnI	GCTCC	3 cut(s)	7, 204, 223
LpnPI	CCDG	9 cut(s)	30, 254, 257, 284, 327, 349, 360, 387, 446
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	235
MaeIII	GTNAC	2 cut(s)	113, 338
MalI	GATC	6 cut(s)	32, 207, 216, 377, 443, 454
MboI	GATC	6 cut(s)	30, 205, 214, 375, 441, 452
MboII	GAAGA	1 cut(s)	362
MflI	RGATCY	4 cut(s)	205, 375, 441, 452
MnlI	CCTC	6 cut(s)	61, 77, 168, 278, 318, 409
MseI	TTAA	2 cut(s)	90, 327
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	272
NcoI	CCATGG	1 cut(s)	133
NdeII	GATC	6 cut(s)	30, 205, 214, 375, 441, 452
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	3 cut(s)	9, 65, 443
PfeI	GAWTC	1 cut(s)	421
PkrI	GCNGC	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	270
PspEI	GGTNACC	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	3 cut(s)	9, 65, 443
PsuI	RGATCY	4 cut(s)	205, 375, 441, 452
RsaI	GTAC	3 cut(s)	143, 320, 406
RsaNI	GTAC	3 cut(s)	142, 319, 405
SaqAI	TTAA	2 cut(s)	90, 327
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	6 cut(s)	30, 205, 214, 375, 441, 452
ScrFI	CCNGG	1 cut(s)	272
SetI	ASST	6 cut(s)	69, 96, 111, 147, 243, 324
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
SsiI	CCGC	2 cut(s)	5, 304
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	3 cut(s)	289, 390, 429
TaqI	TCGA	2 cut(s)	263, 358
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	2 cut(s)	90, 327
Tru9I	TTAA	2 cut(s)	90, 327
TscAI	CASTG	1 cut(s)	292
TseI	GCWGC	1 cut(s)	176
TspRI	CASTG	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.