MD00G1038800.v1.1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
6735052 .. 6736620
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1038800.v1.1.491

Sequence Viewer

Length: 1569 bp
ATGGATTCTACTCACCACTCCAACAGCTTCCTCAGAGACGATCAAACGGCGTCGCAACAGCTTCACTACACAATCTTGAAACAAGCAGACATCAGCCAGCGCCAACTCCATGAAATCACAGAGGTCTGCTCGACACTTTGCGTGTCCAGAGCCGCCGCGATCATCTTACTCCGACACTGTAATTGGAACACCAGTAAGTTGTTTGACAAGTGGTTTGAGGAGGAAGACGAGGTTCAAAAAAGATTAGGCTTGTTTAAGAAAACAAAAACAAGCCCACTTGTTCGAACCTCGTCTTCTGATGTTTGTTCGTTTACTTGTGAAATTTGCTTTGAAACATTTGTTGGTGGTGATCGTGGAATTAGCTCCAATTTTTGTAGCCATTTTTATTGTGGAGGATGTTGGGGAGGGTATGTCAGTAAGTCAATTAACAATGACGGTCTTGGATGCTTGTCGCTGAAATGTCCGCATCCGAGTTGTGGTGCTGCTGTCGGGGAAGATATGATCTTTCTGTTGGCGGACATTGACTCCGATAAGGGTAAGTTTTCGCGGTACCTTGTGAGGTCTTACATTGAAGAGAGTTATCGGAAGACGAAGATAAAATGGTGCCCTGCTCCTGGTTGTGATAATGCTGTAGATTTTGTTGGTGGCAATAAGACTAATTATGATGTTTCCTGCCTTTGTTCGTATATATTTTGTTGGAATTGTTCCGAAGAAGCTCACAGTCCGGTGAAATGTGAAACTGTGGCCAAGTGGATGTCGAAGAACAAGAATGAGTCCGAAAATATGAATTGGATTCTTGTCAACACCAAGCCTTGTCCACAGTGCAAGCGACCCATCGAAAAAAACCAAGGATGTAACCACATGAGATGCAGGGCACCCTGCAGGTTCGATTTCTGCTGGATATGCCTTGGAGAGTGGAGCCGTAGCCATTTGTGTAATTCTTACCCGGAGGAAGTGAAGAGCAATGCGAGTGAGAAAAGGAAAGAGATGGCAAAGATGTCTTTAGACAGATACGTCCACTATTACGAGCGTTGGATAGCCAACCATGATTCCAAGCAAAAAGCTCTCCAAGATTTTCGGCTTGTGCAAGCTGTCCATCTGAACAAACTTGATAAGAAGTATCGCCAAACCAATCCGATTCTCAGTTTTGTAACCGAGGCATGGCAAGAGATAATCCAGTGCCGGCGGGTGCTGCAATGGAGCTACGCATACGGGTTCTACATCCCTGAAAATGAGGATGGTAAGAGGCGGTTTTTTGAGTACTTGCAAGGCGAGGCAGAGTGCGGGTTGGAAAAGTTCCATCGATGTGCAGAAGTGGAACTAGAAGAGCATGTCAACGCAGATAGATCCATTGAAGATTTCATCAAATTTCGGGCTAGGGTAGTCCAACTGACCGTTGTGGTTAGGAATTACTTCAAGAACTTGGTGCGAGCTATGGAAAATGACCTTTCGGAGATAAGATCGTATGGGGATTATTGGTCTTGTGATCTCTGCACCTATGTCAATGACAGTTCTGCTACCATGTGTGTTATGTGTTCTTCAGAGTCTCCATTGCCTGCTGAATTTTAA

Protein Analysis

523

Amino Acids

60.39

Weight (kDa)

6.73

Isoelectric Point (pI)

57.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_ARI1 PF21235 33 - 73 1.6e-10 E3 ubiquitin-protein ligase ARIH1, UBA-like domain
IBR PF01485 180 - 245 4.7e-14 IBR domain, a half RING-finger domain
IBR_2 PF22605 265 - 309 8.8e-14 IBR domain
IBR PF01485 268 - 310 1.5e-06 IBR domain, a half RING-finger domain
IBR_1 PF22191 268 - 307 5.9e-13 IBR domain
Ariadne PF19422 337 - 484 9.1e-09 Ariadne domain
Zn_ribbon_RanBP PF00641 491 - 517 7.3e-07 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021179)

Species Orthologous Gene IDs
malus_domestica MD00G1038800.v1.1 MD08G1100800.v1.1 MD08G1100900.v1.1
prunus_persica Prupe.1G385800_v2.0.a1
pyrus_communis pycom15g02950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1013
Acc36I ACCTGC 1 cut(s) 873
Acc65I GGTACC 1 cut(s) 549
AccB1I GGYRCC 3 cut(s) 549, 603, 874
AccII CGCG 2 cut(s) 158, 547
AciI CCGC 8 cut(s) 153, 156, 464, 515, 547, 1186, 1249, 1284
AclWI GGATC 1 cut(s) 1341
AcoI YGGCCR 1 cut(s) 744
AcsI RAATTY 3 cut(s) 321, 1367, 1562
AcuI CTGAAG 1 cut(s) 1524
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 2 cut(s) 551, 1262
AfiI CCNNNNNNNGG 3 cut(s) 476, 614, 1161
AgsI TTSAA 6 cut(s) 79, 236, 332, 572, 1355, 1417
AjnI CCWGG 1 cut(s) 613
AjuI GAANNNNNNNTTGG 2 cut(s) 324, 356
AluBI AGCT 8 cut(s) 27, 61, 363, 716, 1064, 1091, 1203, 1433
AluI AGCT 8 cut(s) 27, 61, 363, 716, 1064, 1091, 1203, 1433
Alw26I GTCTC 2 cut(s) 30, 1551
AlwI GGATC 1 cut(s) 1341
AoxI GGCC 1 cut(s) 744
ApeKI GCWGC 2 cut(s) 482, 1192
ApoI RAATTY 3 cut(s) 321, 1367, 1562
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
Asp700I GAANNNNTTC 1 cut(s) 1412
Asp718I GGTACC 1 cut(s) 549
AspLEI GCGC 1 cut(s) 102
AsuC2I CCSGG 1 cut(s) 947
AsuHPI GGTGA 3 cut(s) 5, 359, 739
AsuII TTCGAA 1 cut(s) 283
BaeGI GKGCMC 2 cut(s) 608, 877
BalI TGGCCA 1 cut(s) 746
BanI GGYRCC 3 cut(s) 549, 603, 874
BbsI GAAGAC 3 cut(s) 231, 285, 593
BbvI GCAGC 2 cut(s) 469, 1179
BccI CCATC 5 cut(s) 842, 982, 1104, 1232, 1308
BceAI ACGGC 2 cut(s) 63, 906
BciT130I CCWGG 1 cut(s) 615
BcnI CCSGG 1 cut(s) 947
BcoDI GTCTC 2 cut(s) 30, 1551
BfaI CTAG 2 cut(s) 1322, 1377
BfmI CTRYAG 2 cut(s) 630, 880
BfoI RGCGCY 1 cut(s) 103
BfuAI ACCTGC 1 cut(s) 873
BisI GCNGC 4 cut(s) 153, 156, 483, 1193
BlsI GCNGC 4 cut(s) 154, 157, 484, 1194
BmcAI AGTACT 1 cut(s) 1262
Bme1390I CCNGG 2 cut(s) 615, 947
BmiI GGNNCC 4 cut(s) 551, 605, 876, 920
BmrFI CCNGG 2 cut(s) 615, 947
BmsI GCATC 3 cut(s) 434, 475, 857
BpiI GAAGAC 3 cut(s) 231, 285, 593
BplI GAGNNNNNCTC 2 cut(s) 113, 145
Bpu14I TTCGAA 1 cut(s) 283
BpuMI CCSGG 1 cut(s) 947
Bsa29I ATCGAT 1 cut(s) 1303
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 847, 907, 1155
BsaWI WCCGGW 1 cut(s) 724
BsaXI ACNNNNNCTCC 4 cut(s) 396, 426, 509, 539
Bsc4I CCNNNNNNNGG 3 cut(s) 476, 614, 1161
Bse118I RCCGGY 1 cut(s) 1182
Bse1I ACTGG 2 cut(s) 192, 1177
Bse3DI GCAATG 3 cut(s) 970, 1202, 1550
BseBI CCWGG 1 cut(s) 615
BseCI ATCGAT 1 cut(s) 1303
BseDI CCNNGG 3 cut(s) 847, 907, 1155
BseGI GGATG 7 cut(s) 401, 449, 466, 759, 857, 1221, 1243
BseLI CCNNNNNNNGG 3 cut(s) 476, 614, 1161
BseMI GCAATG 3 cut(s) 970, 1202, 1550
BseMII CTCAG 2 cut(s) 46, 1156
BseNI ACTGG 2 cut(s) 192, 1177
BseRI GAGGAG 1 cut(s) 233
BseSI GKGCMC 2 cut(s) 608, 877
BseXI GCAGC 2 cut(s) 469, 1179
BsgI GTGCAG 2 cut(s) 1329, 1477
Bsh1236I CGCG 2 cut(s) 158, 547
BshFI GGCC 1 cut(s) 746
BshNI GGYRCC 3 cut(s) 549, 603, 874
BshVI ATCGAT 1 cut(s) 1303
BsiSI CCGG 3 cut(s) 725, 947, 1183
BslI CCNNNNNNNGG 3 cut(s) 476, 614, 1161
BsmAI GTCTC 2 cut(s) 30, 1551
BsmBI CGTCTC 1 cut(s) 30
BsnI GGCC 1 cut(s) 746
Bsp119I TTCGAA 1 cut(s) 283
Bsp1286I GDGCHC 2 cut(s) 608, 877
Bsp143I GATC 7 cut(s) 40, 159, 349, 501, 1346, 1460, 1486
BspACI CCGC 8 cut(s) 153, 156, 464, 515, 547, 1186, 1249, 1284
BspANI GGCC 1 cut(s) 746
BspCNI CTCAG 2 cut(s) 45, 1155
BspDI ATCGAT 1 cut(s) 1303
BspFNI CGCG 2 cut(s) 158, 547
BspLI GGNNCC 4 cut(s) 551, 605, 876, 920
BspMAI CTGCAG 1 cut(s) 884
BspMI ACCTGC 1 cut(s) 873
BspPI GGATC 1 cut(s) 1341
BspQI GCTCTTC 2 cut(s) 953, 1320
BspT104I TTCGAA 1 cut(s) 283
BspT107I GGYRCC 3 cut(s) 549, 603, 874
BsrDI GCAATG 3 cut(s) 970, 1202, 1550
BsrFI RCCGGY 1 cut(s) 1182
BsrI ACTGG 2 cut(s) 192, 1177
BssAI RCCGGY 1 cut(s) 1182
BssECI CCNNGG 3 cut(s) 847, 907, 1155
BssMI GATC 7 cut(s) 40, 159, 349, 501, 1346, 1460, 1486
BssNI GRCGYC 1 cut(s) 50
BssT1I CCWWGG 2 cut(s) 847, 907
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 7 cut(s) 179, 437, 722, 742, 822, 1396, 1511
Bst6I CTCTTC 3 cut(s) 567, 953, 1320
BstACI GRCGYC 1 cut(s) 50
BstBI TTCGAA 1 cut(s) 283
BstC8I GCNNGC 6 cut(s) 98, 827, 1089, 1184, 1431, 1557
BstDEI CTNAG 2 cut(s) 32, 1142
BstF5I GGATG 7 cut(s) 401, 449, 466, 759, 857, 1221, 1243
BstFNI CGCG 2 cut(s) 158, 547
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 7 cut(s) 43, 162, 352, 504, 1349, 1463, 1489
BstMAI GTCTC 2 cut(s) 30, 1551
BstMBI GATC 7 cut(s) 40, 159, 349, 501, 1346, 1460, 1486
BstMWI GCNNNNNNNGC 2 cut(s) 903, 1192
BstNI CCWGG 1 cut(s) 615
BstNSI RCATGY 1 cut(s) 1334
BstSCI CCNGG 2 cut(s) 613, 945
BstSFI CTRYAG 2 cut(s) 630, 880
BstSLI GKGCMC 2 cut(s) 608, 877
BstUI CGCG 2 cut(s) 158, 547
BstV1I GCAGC 2 cut(s) 469, 1179
BstV2I GAAGAC 3 cut(s) 231, 285, 593
BstX2I RGATCY 1 cut(s) 1346
BstYI RGATCY 1 cut(s) 1346
Bsu15I ATCGAT 1 cut(s) 1303
BsuRI GGCC 1 cut(s) 746
BsuTUI ATCGAT 1 cut(s) 1303
BtsCI GGATG 7 cut(s) 401, 449, 466, 759, 857, 1221, 1243
BtsIMutI CAGTG 3 cut(s) 175, 827, 1184
BveI ACCTGC 1 cut(s) 873
Cac8I GCNNGC 6 cut(s) 98, 827, 1089, 1184, 1431, 1557
CfoI GCGC 1 cut(s) 102
Cfr10I RCCGGY 1 cut(s) 1182
ClaI ATCGAT 1 cut(s) 1303
CseI GACGC 1 cut(s) 39
Csp6I GTAC 2 cut(s) 550, 1261
CviAII CATG 6 cut(s) 110, 862, 1046, 1161, 1331, 1522
CviQI GTAC 2 cut(s) 550, 1261
DdeI CTNAG 2 cut(s) 32, 1142
DpnI GATC 7 cut(s) 42, 161, 351, 503, 1348, 1462, 1488
DpnII GATC 7 cut(s) 40, 159, 349, 501, 1346, 1460, 1486
DrdI GACNNNNNNGTC 1 cut(s) 1013
DseDI GACNNNNNNGTC 1 cut(s) 1013
EaeI YGGCCR 1 cut(s) 744
Eam1104I CTCTTC 3 cut(s) 567, 953, 1320
EarI CTCTTC 3 cut(s) 567, 953, 1320
EciI GGCGGA 1 cut(s) 530
Eco130I CCWWGG 2 cut(s) 847, 907
Eco57I CTGAAG 1 cut(s) 1524
EcoRII CCWGG 1 cut(s) 613
EcoT14I CCWWGG 2 cut(s) 847, 907
ErhI CCWWGG 2 cut(s) 847, 907
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 6 cut(s) 113, 865, 1049, 1164, 1334, 1525
FatI CATG 6 cut(s) 109, 861, 1045, 1160, 1330, 1521
FauI CCCGC 2 cut(s) 1179, 1277
Fnu4HI GCNGC 4 cut(s) 153, 156, 483, 1193
FokI GGATG 7 cut(s) 408, 453, 456, 766, 864, 1208, 1250
Fsp4HI GCNGC 4 cut(s) 153, 156, 483, 1193
FspBI CTAG 2 cut(s) 1322, 1377
GlaI GCGC 1 cut(s) 101
GluI GCNGC 4 cut(s) 153, 156, 483, 1193
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 1 cut(s) 746
HapII CCGG 3 cut(s) 725, 947, 1183
HgaI GACGC 1 cut(s) 39
HhaI GCGC 1 cut(s) 102
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 6 cut(s) 113, 865, 1049, 1164, 1334, 1525
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HincII GTYRAC 2 cut(s) 802, 1336
HindII GTYRAC 2 cut(s) 802, 1336
HinfI GANTC 7 cut(s) 5, 524, 773, 793, 1049, 1138, 1544
HpaII CCGG 3 cut(s) 725, 947, 1183
HphI GGTGA 3 cut(s) 5, 359, 739
Hpy166II GTNNAC 5 cut(s) 312, 802, 818, 1018, 1336
Hpy188III TCNNGA 3 cut(s) 76, 147, 1417
Hpy8I GTNNAC 5 cut(s) 312, 802, 818, 1018, 1336
Hpy99I CGWCG 1 cut(s) 55
HpyCH4III ACNGT 7 cut(s) 179, 437, 722, 742, 822, 1396, 1511
HpyCH4IV ACGT 1 cut(s) 1014
HpyCH4V TGCA 8 cut(s) 825, 870, 882, 1087, 1195, 1267, 1310, 1494
HpyF10VI GCNNNNNNNGC 2 cut(s) 903, 1192
HpyF3I CTNAG 2 cut(s) 32, 1142
HpySE526I ACGT 1 cut(s) 1014
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 6 cut(s) 113, 865, 1049, 1164, 1334, 1525
HspAI GCGC 1 cut(s) 100
KpnI GGTACC 1 cut(s) 553
KroI GCCGGC 1 cut(s) 1182
KroNI GCCGGC 1 cut(s) 1184
Kzo9I GATC 7 cut(s) 40, 159, 349, 501, 1346, 1460, 1486
LguI GCTCTTC 2 cut(s) 953, 1320
LmnI GCTCC 4 cut(s) 368, 616, 918, 1200
Lsp1109I GCAGC 2 cut(s) 469, 1179
LweI GCATC 3 cut(s) 434, 475, 857
MaeI CTAG 2 cut(s) 1322, 1377
MaeII ACGT 1 cut(s) 1014
MaeIII GTNAC 2 cut(s) 854, 1150
MalI GATC 7 cut(s) 42, 161, 351, 503, 1348, 1462, 1488
MboI GATC 7 cut(s) 40, 159, 349, 501, 1346, 1460, 1486
MflI RGATCY 1 cut(s) 1346
MhlI GDGCHC 2 cut(s) 608, 877
MlsI TGGCCA 1 cut(s) 746
MluNI TGGCCA 1 cut(s) 746
MlyI GAGTC 3 cut(s) 518, 782, 1553
MmeI TCCRAC 6 cut(s) 45, 196, 677, 1013, 1269, 1411
Mox20I TGGCCA 1 cut(s) 746
MroNI GCCGGC 1 cut(s) 1182
MroXI GAANNNNTTC 1 cut(s) 1412
MscI TGGCCA 1 cut(s) 746
MseI TTAA 3 cut(s) 255, 426, 1567
MslI CAYNNNNRTG 1 cut(s) 1305
Msp20I TGGCCA 1 cut(s) 746
MspI CCGG 3 cut(s) 725, 947, 1183
MspR9I CCNGG 2 cut(s) 615, 947
MvaI CCWGG 1 cut(s) 615
MvnI CGCG 2 cut(s) 158, 547
MwoI GCNNNNNNNGC 2 cut(s) 903, 1192
NaeI GCCGGC 1 cut(s) 1184
NciI CCSGG 1 cut(s) 947
NdeII GATC 7 cut(s) 40, 159, 349, 501, 1346, 1460, 1486
NgoMIV GCCGGC 1 cut(s) 1182
NlaIII CATG 6 cut(s) 113, 865, 1049, 1164, 1334, 1525
NlaIV GGNNCC 4 cut(s) 551, 605, 876, 920
NspI RCATGY 1 cut(s) 1334
NspV TTCGAA 1 cut(s) 283
PciSI GCTCTTC 2 cut(s) 953, 1320
PdiI GCCGGC 1 cut(s) 1184
PdmI GAANNNNTTC 1 cut(s) 1412
PfeI GAWTC 4 cut(s) 5, 793, 1049, 1138
PkrI GCNGC 4 cut(s) 154, 157, 484, 1194
PleI GAGTC 3 cut(s) 518, 781, 1552
PpsI GAGTC 3 cut(s) 518, 781, 1552
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 4 cut(s) 551, 605, 876, 920
PstI CTGCAG 1 cut(s) 884
PsuI RGATCY 1 cut(s) 1346
RsaI GTAC 2 cut(s) 551, 1262
RsaNI GTAC 2 cut(s) 550, 1261
RseI CAYNNNNRTG 1 cut(s) 1305
SapI GCTCTTC 2 cut(s) 953, 1320
SaqAI TTAA 3 cut(s) 255, 426, 1567
SatI GCNGC 4 cut(s) 153, 156, 483, 1193
Sau3AI GATC 7 cut(s) 40, 159, 349, 501, 1346, 1460, 1486
SbfI CCTGCAGG 1 cut(s) 884
ScaI AGTACT 1 cut(s) 1262
SchI GAGTC 3 cut(s) 518, 782, 1553
ScrFI CCNGG 2 cut(s) 615, 947
SdaI CCTGCAGG 1 cut(s) 884
SduI GDGCHC 2 cut(s) 608, 877
SfaNI GCATC 3 cut(s) 434, 475, 857
SfcI CTRYAG 2 cut(s) 630, 880
SfuI TTCGAA 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 1305
Sse8387I CCTGCAGG 1 cut(s) 884
SsiI CCGC 8 cut(s) 153, 156, 464, 515, 547, 1186, 1249, 1284
SspMI CTAG 2 cut(s) 1322, 1377
StyD4I CCNGG 2 cut(s) 613, 945
StyI CCWWGG 2 cut(s) 847, 907
TaaI ACNGT 7 cut(s) 179, 437, 722, 742, 822, 1396, 1511
TaiI ACGT 1 cut(s) 1017
TaqI TCGA 6 cut(s) 131, 283, 758, 837, 888, 1303
TatI WGTACW 1 cut(s) 1260
TauI GCSGC 2 cut(s) 155, 158
TfiI GAWTC 4 cut(s) 5, 793, 1049, 1138
Tru1I TTAA 3 cut(s) 255, 426, 1567
Tru9I TTAA 3 cut(s) 255, 426, 1567
TscAI CASTG 3 cut(s) 182, 827, 1184
TseI GCWGC 2 cut(s) 482, 1192
TspDTI ATGAA 3 cut(s) 126, 800, 1351
TspRI CASTG 3 cut(s) 182, 827, 1184
XapI RAATTY 3 cut(s) 321, 1367, 1562
XceI RCATGY 1 cut(s) 1334
XcmI CCANNNNNNNNNTGG 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 1412
XspI CTAG 2 cut(s) 1322, 1377
ZrmI AGTACT 1 cut(s) 1262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.