Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0021179

Physical Location & Seq

Genomic Coordinates Reverse (-)

8484680 .. 8485393

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1100800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAACGTTTGGGTATATAATCGCATGTACAAGAAAATAGTTGTTGAAGATTTTCATCACCTTGTGCAAGATGTTCATTTGAAGAAGCTCAGTGTGAAATACATACAAACGAATCCTGTTCTTGATTTTGTTGTGGAGGCCCGGCAAGAGATTATCGAATGCAGACCGGTGCTGCAGTGGATCTATGTGTATGGTTACTTTATACCCAAGCATGAGTGTGTTAAGAGGCAGTTGTTTGAGTACTTGCTAGGCGAGGTGAAGAGTGACTTGGAAAAGCTATGTCATTGTGCAGAAGTGGAACTGGAAGAGAAGATTATCAATGTTGATCGATCTATTGAAGAGTTCTTTGAATTTCGAGGAAAGTTGACACAGCTGATTGCGATTGGAAACTACTTCAGAAACTTTGTGAGAGGGATGAAGAATTACCTCTTTGTGAGAGGGATGAAGAATGACTTTTCGGAGGTAGTGGATTATTCAGAGAATAATTTTCCGGAGGTAAGTGTGGGTTGTTGGCCTTGCGATCGCTGCACCTATGTCAATGACTCTTCTGCCACCGCGTGCATGATGTGCACAGAGGAGGATTCTCCGGTGCCGGCCAAGTGCGAATCTAAGAAGAGACAGAAATCTCCGGTGCATGATGATGCCATGTTGGAATCCAAATCCAAGAAGCGGAGGAGGAAGTTTAATCGTAAAAAGTTAGAATTTAAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

238

Amino Acids

28.23

Weight (kDa)

8.43

Isoelectric Point (pI)

54.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021179)

Species	Orthologous Gene IDs
malus_domestica	MD00G1038800.v1.1 MD08G1100800.v1.1 MD08G1100900.v1.1
prunus_persica	Prupe.1G385800_v2.0.a1
pyrus_communis	pycom15g02950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	589
AccII	CGCG	1 cut(s)	557
AccIII	TCCGGA	1 cut(s)	490
AciI	CCGC	2 cut(s)	555, 670
AclI	AACGTT	1 cut(s)	6
AclWI	GGATC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	594
AcsI	RAATTY	3 cut(s)	350, 701, 707
AcuI	CTGAAG	1 cut(s)	379
AdeI	CACNNNGTG	2 cut(s)	64, 558
AfaI	GTAC	2 cut(s)	29, 242
AfiI	CCNNNNNNNGG	1 cut(s)	669
AgeI	ACCGGT	1 cut(s)	166
AgsI	TTSAA	4 cut(s)	47, 82, 338, 350
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	3 cut(s)	88, 277, 373
AluI	AGCT	3 cut(s)	88, 277, 373
Alw21I	GWGCWC	1 cut(s)	572
Alw26I	GTCTC	1 cut(s)	610
Alw44I	GTGCAC	1 cut(s)	568
AlwI	GGATC	1 cut(s)	188
Aor13HI	TCCGGA	1 cut(s)	490
AoxI	GGCC	3 cut(s)	138, 512, 594
ApaLI	GTGCAC	1 cut(s)	568
ApeKI	GCWGC	2 cut(s)	172, 525
ApoI	RAATTY	3 cut(s)	350, 701, 707
AsiGI	ACCGGT	1 cut(s)	166
AsiSI	GCGATCGC	1 cut(s)	523
Asp700I	GAANNNNTTC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	139
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	2 cut(s)	50, 268
BaeGI	GKGCMC	1 cut(s)	572
BanI	GGYRCC	1 cut(s)	589
Bbv12I	GWGCWC	1 cut(s)	572
BbvI	GCAGC	2 cut(s)	159, 512
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	610
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	173
BisI	GCNGC	2 cut(s)	173, 526
BlsI	GCNGC	2 cut(s)	174, 527
BmcAI	AGTACT	1 cut(s)	242
Bme1390I	CCNGG	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	591
BmrFI	CCNGG	1 cut(s)	142
BmsI	GCATC	1 cut(s)	631
BpuMI	CCSGG	1 cut(s)	142
Bsa29I	ATCGAT	1 cut(s)	328
BsaBI	GATNNNNATC	1 cut(s)	54
BsaWI	WCCGGW	4 cut(s)	166, 490, 586, 628
Bsc4I	CCNNNNNNNGG	1 cut(s)	669
Bse118I	RCCGGY	2 cut(s)	166, 592
Bse1I	ACTGG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	54
BseAI	TCCGGA	1 cut(s)	490
BseCI	ATCGAT	1 cut(s)	328
BseGI	GGATG	2 cut(s)	420, 447
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	669
BseMII	CTCAG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	2 cut(s)	590, 688
BseSI	GKGCMC	1 cut(s)	572
BseXI	GCAGC	2 cut(s)	159, 512
BsgI	GTGCAG	2 cut(s)	309, 511
Bsh1236I	CGCG	1 cut(s)	557
Bsh1285I	CGRYCG	1 cut(s)	523
BshFI	GGCC	3 cut(s)	140, 514, 596
BshNI	GGYRCC	1 cut(s)	589
BshTI	ACCGGT	1 cut(s)	166
BshVI	ATCGAT	1 cut(s)	328
BsiEI	CGRYCG	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	572
BsiSI	CCGG	6 cut(s)	142, 167, 491, 587, 593, 629
BslI	CCNNNNNNNGG	1 cut(s)	669
BsmAI	GTCTC	1 cut(s)	610
BsmI	GAATGC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	140, 514, 596
Bsp1286I	GDGCHC	1 cut(s)	572
Bsp13I	TCCGGA	1 cut(s)	490
Bsp1407I	TGTACA	1 cut(s)	27
Bsp143I	GATC	4 cut(s)	180, 325, 329, 520
BspACI	CCGC	2 cut(s)	555, 670
BspANI	GGCC	3 cut(s)	140, 514, 596
BspCNI	CTCAG	1 cut(s)	102
BspDI	ATCGAT	1 cut(s)	328
BspEI	TCCGGA	1 cut(s)	490
BspFNI	CGCG	1 cut(s)	557
BspLI	GGNNCC	1 cut(s)	591
BspMAI	CTGCAG	1 cut(s)	177
BspPI	GGATC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	589
BsrFI	RCCGGY	2 cut(s)	166, 592
BsrGI	TGTACA	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	306
BssAI	RCCGGY	2 cut(s)	166, 592
BssMI	GATC	4 cut(s)	180, 325, 329, 520
Bst6I	CTCTTC	5 cut(s)	254, 300, 333, 550, 608
BstAPI	GCANNNNNTGC	1 cut(s)	567
BstAUI	TGTACA	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	559, 594
BstDEI	CTNAG	2 cut(s)	89, 609
BstF5I	GGATG	2 cut(s)	420, 447
BstFNI	CGCG	1 cut(s)	557
BstKTI	GATC	4 cut(s)	183, 328, 332, 523
BstMAI	GTCTC	1 cut(s)	610
BstMBI	GATC	4 cut(s)	180, 325, 329, 520
BstMCI	CGRYCG	1 cut(s)	523
BstMWI	GCNNNNNNNGC	2 cut(s)	525, 567
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	173
BstSLI	GKGCMC	1 cut(s)	572
BstUI	CGCG	1 cut(s)	557
BstV1I	GCAGC	2 cut(s)	159, 512
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
Bsu15I	ATCGAT	1 cut(s)	328
BsuRI	GGCC	3 cut(s)	140, 514, 596
BsuTUI	ATCGAT	1 cut(s)	328
BtsCI	GGATG	2 cut(s)	420, 447
BtsI	GCAGTG	1 cut(s)	182
BtsIMutI	CAGTG	2 cut(s)	97, 182
Cac8I	GCNNGC	2 cut(s)	559, 594
Cfr10I	RCCGGY	2 cut(s)	166, 592
Cfr13I	GGNCC	1 cut(s)	139
ClaI	ATCGAT	1 cut(s)	328
Csp6I	GTAC	2 cut(s)	28, 241
CspAI	ACCGGT	1 cut(s)	166
CviAII	CATG	5 cut(s)	25, 212, 562, 635, 646
CviJI	RGCY	6 cut(s)	88, 140, 277, 373, 514, 596
CviKI_1	RGCY	6 cut(s)	88, 140, 277, 373, 514, 596
CviQI	GTAC	2 cut(s)	28, 241
DdeI	CTNAG	2 cut(s)	89, 609
DpnI	GATC	4 cut(s)	182, 327, 331, 522
DpnII	GATC	4 cut(s)	180, 325, 329, 520
DraI	TTTAAA	1 cut(s)	706
DraIII	CACNNNGTG	2 cut(s)	64, 558
EaeI	YGGCCR	1 cut(s)	594
Eam1104I	CTCTTC	5 cut(s)	254, 300, 333, 550, 608
EarI	CTCTTC	5 cut(s)	254, 300, 333, 550, 608
Eco57I	CTGAAG	1 cut(s)	379
FaeI	CATG	5 cut(s)	28, 215, 565, 638, 649
FalI	AAGNNNNNCTT	4 cut(s)	251, 283, 437, 469
FatI	CATG	5 cut(s)	24, 211, 561, 634, 645
Fnu4HI	GCNGC	2 cut(s)	173, 526
FokI	GGATG	2 cut(s)	427, 454
Fsp4HI	GCNGC	2 cut(s)	173, 526
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	2 cut(s)	173, 526
HaeIII	GGCC	3 cut(s)	140, 514, 596
HapII	CCGG	6 cut(s)	142, 167, 491, 587, 593, 629
Hin1II	CATG	5 cut(s)	28, 215, 565, 638, 649
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	5 cut(s)	112, 542, 581, 605, 653
HpaII	CCGG	6 cut(s)	142, 167, 491, 587, 593, 629
HphI	GGTGA	2 cut(s)	50, 268
Hpy166II	GTNNAC	2 cut(s)	366, 570
Hpy188I	TCNGA	3 cut(s)	398, 460, 478
Hpy188III	TCNNGA	2 cut(s)	122, 491
Hpy8I	GTNNAC	2 cut(s)	366, 570
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	8 cut(s)	67, 162, 175, 290, 528, 561, 570, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	525, 567
HpyF3I	CTNAG	2 cut(s)	89, 609
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	5 cut(s)	28, 215, 565, 638, 649
Kpn2I	TCCGGA	1 cut(s)	490
KroI	GCCGGC	1 cut(s)	592
KroNI	GCCGGC	1 cut(s)	594
Kzo9I	GATC	4 cut(s)	180, 325, 329, 520
LpnPI	CCDG	8 cut(s)	129, 155, 180, 287, 504, 600, 606, 642
Lsp1109I	GCAGC	2 cut(s)	159, 512
LweI	GCATC	1 cut(s)	631
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	194, 263
MalI	GATC	4 cut(s)	182, 327, 331, 522
MboI	GATC	4 cut(s)	180, 325, 329, 520
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	572
MluCI	AATT	5 cut(s)	350, 421, 484, 701, 707
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	1 cut(s)	630
MroI	TCCGGA	1 cut(s)	490
MroNI	GCCGGC	1 cut(s)	592
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	3 cut(s)	222, 684, 705
MslI	CAYNNNNRTG	2 cut(s)	216, 639
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	6 cut(s)	142, 167, 491, 587, 593, 629
MspR9I	CCNGG	1 cut(s)	142
Mva1269I	GAATGC	1 cut(s)	164
MvnI	CGCG	1 cut(s)	557
MwoI	GCNNNNNNNGC	2 cut(s)	525, 567
NaeI	GCCGGC	1 cut(s)	594
NciI	CCSGG	1 cut(s)	142
NdeII	GATC	4 cut(s)	180, 325, 329, 520
NgoMIV	GCCGGC	1 cut(s)	592
NlaIII	CATG	5 cut(s)	28, 215, 565, 638, 649
NlaIV	GGNNCC	1 cut(s)	591
NmuCI	GTSAC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	28
PctI	GAATGC	1 cut(s)	164
PdiI	GCCGGC	1 cut(s)	594
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	4 cut(s)	112, 581, 605, 653
PinAI	ACCGGT	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	174, 527
Ple19I	CGATCG	1 cut(s)	523
PleI	GAGTC	1 cut(s)	536
PpsI	GAGTC	1 cut(s)	536
Psp1406I	AACGTT	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	591
PspPI	GGNCC	1 cut(s)	139
PstI	CTGCAG	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	180
PvuI	CGATCG	1 cut(s)	523
PvuII	CAGCTG	1 cut(s)	373
RgaI	GCGATCGC	1 cut(s)	523
RsaI	GTAC	2 cut(s)	29, 242
RsaNI	GTAC	2 cut(s)	28, 241
RseI	CAYNNNNRTG	2 cut(s)	216, 639
SaqAI	TTAA	3 cut(s)	222, 684, 705
SatI	GCNGC	2 cut(s)	173, 526
Sau3AI	GATC	4 cut(s)	180, 325, 329, 520
Sau96I	GGNCC	1 cut(s)	139
ScaI	AGTACT	1 cut(s)	242
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	572
SfaAI	GCGATCGC	1 cut(s)	523
SfaNI	GCATC	1 cut(s)	631
SfcI	CTRYAG	1 cut(s)	173
SgfI	GCGATCGC	1 cut(s)	523
SmiI	ATTTAAAT	1 cut(s)	706
SmiMI	CAYNNNNRTG	2 cut(s)	216, 639
Sse9I	AATT	5 cut(s)	350, 421, 484, 701, 707
SsiI	CCGC	2 cut(s)	555, 670
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	140
SwaI	ATTTAAAT	1 cut(s)	706
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	3 cut(s)	156, 328, 355
TasI	AATT	5 cut(s)	350, 421, 484, 701, 707
TatI	WGTACW	2 cut(s)	27, 240
TfiI	GAWTC	4 cut(s)	112, 581, 605, 653
Tru1I	TTAA	3 cut(s)	222, 684, 705
Tru9I	TTAA	3 cut(s)	222, 684, 705
TscAI	CASTG	2 cut(s)	97, 182
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	2 cut(s)	172, 525
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	5 cut(s)	17, 44, 65, 431, 458
TspRI	CASTG	2 cut(s)	97, 182
VneI	GTGCAC	1 cut(s)	568
XapI	RAATTY	3 cut(s)	350, 701, 707
XceI	RCATGY	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	1 cut(s)	248
ZrmI	AGTACT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.