Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0021179

Physical Location & Seq

Genomic Coordinates Reverse (-)

8485906 .. 8486346

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1100900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACAGAGGTGTGCTCGAAACTGCACGTATCGAGATCCTCGGCAATTATCTTACTCCGCCACTGCAATTGGAATGTTAGCATGTTATTTGACAAGTGGTTTGAGGAGGAAGACGATGTTCGGAACAAACTGGGATTGTTTAGGAAAGTCCCACTTGTTGATCGAAGTGTTGGTTCGTTTACTTGCGAAATTTGCTTCGAGACTTGTGATGCTAGCGGTGATCATAGTATTAGATCCGATTTATGTGGCCATTTTTATTGTATTGCATGTTGGGCAGCTTATGTAAGAGAATCGATTAGCAATGATTGTGTTGGATGTTTGTCTCTAAAATGTCCTCATCCGGGCTGTAGCGCTGCTGTTGGTGAAGATTTGATTCTCCCTGTGTTGGCAACCAAAGCCAATAATGACCCGATAAGGCCAAGTATTCTCAGTACCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-RanBP

Protein Analysis

147

Amino Acids

16.22

Weight (kDa)

5.67

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_ARIH2_N	PF26000	1 - 33	9.1e-06	E3 ubiquitin-protein ligase ARIH2, N-terminal UBA domain
UBA_ARI1	PF21235	2 - 35	5.3e-09	E3 ubiquitin-protein ligase ARIH1, UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021179)

Species	Orthologous Gene IDs
malus_domestica	MD00G1038800.v1.1 MD08G1100800.v1.1 MD08G1100900.v1.1
prunus_persica	Prupe.1G385800_v2.0.a1
pyrus_communis	pycom15g02950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	58, 216
AclWI	GGATC	2 cut(s)	30, 228
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	189
AfaI	GTAC	1 cut(s)	433
AfeI	AGCGCT	1 cut(s)	352
AfiI	CCNNNNNNNGG	2 cut(s)	341, 385
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	2 cut(s)	194, 327
AlwI	GGATC	2 cut(s)	30, 228
Aor51HI	AGCGCT	1 cut(s)	352
AoxI	GGCC	2 cut(s)	247, 416
ApeKI	GCWGC	2 cut(s)	275, 353
ApoI	RAATTY	1 cut(s)	189
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AspLEI	GCGC	1 cut(s)	353
AsuC2I	CCSGG	1 cut(s)	342
AsuHPI	GGTGA	2 cut(s)	230, 374
AsuNHI	GCTAGC	1 cut(s)	212
BalI	TGGCCA	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	287, 340
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	342
BcoDI	GTCTC	2 cut(s)	194, 327
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	346
BfoI	RGCGCY	1 cut(s)	354
BisI	GCNGC	2 cut(s)	276, 354
BlsI	GCNGC	2 cut(s)	277, 355
Bme1390I	CCNGG	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	342
BmrI	ACTGGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	199
BmtI	GCTAGC	1 cut(s)	216
BmuI	ACTGGG	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	117
BplI	GAGNNNNNCTC	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	342
Bsa29I	ATCGAT	1 cut(s)	293
BsaAI	YACGTR	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 385
Bse1I	ACTGG	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	307
BseCI	ATCGAT	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	2 cut(s)	320, 337
BseLI	CCNNNNNNNGG	2 cut(s)	341, 385
BseMI	GCAATG	1 cut(s)	307
BseNI	ACTGG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	287, 340
BsgI	GTGCAG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	249, 418
BshVI	ATCGAT	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	341
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	341, 385
BsmAI	GTCTC	2 cut(s)	194, 327
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	2 cut(s)	249, 418
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	4 cut(s)	35, 160, 220, 233
BspACI	CCGC	2 cut(s)	58, 216
BspANI	GGCC	2 cut(s)	249, 418
BspCNI	CTCAG	1 cut(s)	441
BspDI	ATCGAT	1 cut(s)	293
BspOI	GCTAGC	1 cut(s)	216
BspPI	GGATC	2 cut(s)	30, 228
BsrDI	GCAATG	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	4 cut(s)	35, 160, 220, 233
BstBAI	YACGTR	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	1 cut(s)	428
BstF5I	GGATG	2 cut(s)	320, 337
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	4 cut(s)	38, 163, 223, 236
BstMAI	GTCTC	2 cut(s)	194, 327
BstMBI	GATC	4 cut(s)	35, 160, 220, 233
BstMWI	GCNNNNNNNGC	3 cut(s)	192, 272, 395
BstNSI	RCATGY	2 cut(s)	85, 270
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	1 cut(s)	346
BstV1I	GCAGC	2 cut(s)	287, 340
BstV2I	GAAGAC	1 cut(s)	117
BstX2I	RGATCY	2 cut(s)	35, 233
BstYI	RGATCY	2 cut(s)	35, 233
Bsu15I	ATCGAT	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	249, 418
BsuTUI	ATCGAT	1 cut(s)	293
BtsCI	GGATG	2 cut(s)	320, 337
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	214
CfoI	GCGC	1 cut(s)	353
ClaI	ATCGAT	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	432
CspCI	CAANNNNNGTGG	2 cut(s)	50, 85
CviAII	CATG	2 cut(s)	82, 267
CviJI	RGCY	5 cut(s)	249, 278, 345, 398, 418
CviKI_1	RGCY	5 cut(s)	249, 278, 345, 398, 418
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	1 cut(s)	428
DpnI	GATC	4 cut(s)	37, 162, 222, 235
DpnII	GATC	4 cut(s)	35, 160, 220, 233
EaeI	YGGCCR	1 cut(s)	247
EciI	GGCGGA	1 cut(s)	47
Eco47III	AGCGCT	1 cut(s)	352
FaeI	CATG	2 cut(s)	85, 270
FaiI	YATR	5 cut(s)	83, 225, 244, 268, 282
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	2 cut(s)	81, 266
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	276, 354
FokI	GGATG	2 cut(s)	324, 327
Fsp4HI	GCNGC	2 cut(s)	276, 354
FspBI	CTAG	1 cut(s)	213
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	2 cut(s)	276, 354
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	249, 418
HapII	CCGG	1 cut(s)	341
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	2 cut(s)	85, 270
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HinfI	GANTC	2 cut(s)	290, 373
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	2 cut(s)	230, 374
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	2 cut(s)	123, 238
Hpy188III	TCNNGA	2 cut(s)	33, 199
Hpy8I	GTNNAC	1 cut(s)	180
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	3 cut(s)	25, 66, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	192, 272, 395
HpyF3I	CTNAG	1 cut(s)	428
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	85, 270
HspAI	GCGC	1 cut(s)	351
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	4 cut(s)	35, 160, 220, 233
LpnPI	CCDG	3 cut(s)	116, 354, 393
Lsp1109I	GCAGC	2 cut(s)	287, 340
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	27
MalI	GATC	4 cut(s)	37, 162, 222, 235
MboI	GATC	4 cut(s)	35, 160, 220, 233
MboII	GAAGA	2 cut(s)	122, 377
MfeI	CAATTG	1 cut(s)	67
MflI	RGATCY	2 cut(s)	35, 233
MhlI	GDGCHC	1 cut(s)	17
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	3 cut(s)	45, 67, 189
MluNI	TGGCCA	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	4 cut(s)	49, 97, 100, 345
Mox20I	TGGCCA	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	249
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	342
MunI	CAATTG	1 cut(s)	67
MwoI	GCNNNNNNNGC	3 cut(s)	192, 272, 395
NciI	CCSGG	1 cut(s)	342
NdeII	GATC	4 cut(s)	35, 160, 220, 233
NheI	GCTAGC	1 cut(s)	212
NlaIII	CATG	2 cut(s)	85, 270
NmeAIII	GCCGAG	1 cut(s)	20
NspI	RCATGY	2 cut(s)	85, 270
PfeI	GAWTC	2 cut(s)	290, 373
PkrI	GCNGC	2 cut(s)	277, 355
Ppu21I	YACGTR	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	35, 233
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
SatI	GCNGC	2 cut(s)	276, 354
Sau3AI	GATC	4 cut(s)	35, 160, 220, 233
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	4 cut(s)	12, 30, 280, 437
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	346
Sse9I	AATT	3 cut(s)	45, 67, 189
SsiI	CCGC	2 cut(s)	58, 216
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	340
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	5 cut(s)	17, 32, 163, 198, 293
TasI	AATT	3 cut(s)	45, 67, 189
TfiI	GAWTC	2 cut(s)	290, 373
TscAI	CASTG	1 cut(s)	68
TseI	GCWGC	2 cut(s)	275, 353
TspRI	CASTG	1 cut(s)	68
XapI	RAATTY	1 cut(s)	189
XceI	RCATGY	2 cut(s)	85, 270
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.