MD00G1043900.v1.1
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
8036578 .. 8037003
426 bp
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UTR
Exon/CDS
Intron
MD00G1043900.v1.1.491

Sequence Viewer

Length: 426 bp
ATGGCAATCCAGTCAAATTTGTATTTATTTGCACTTCATGATAACAACTTTGGAAATAATGAGGAAGGTGACTTGGATTTCATCTCCTCTCTAGTTAATTGCGCCAATTTAGAAGTTGTATCTATCAGTGCCAATAATTTTGGAGGAGTGCTAACTGAATCTATCAGCAATCTCTCAAGAAAGCTCAGGAGAATAGATTTTCGAGGGAATCAGATAAGCGGAAACATTCCTGTCGGAGTTGGAAATCTCATCAACTTGGAGACAATAAACTTTGATGACAACCGATTGACATGCACTTTACCAAGTTTGATAGGTAAATTGAATAAGGCAGATTGCTTCTCAAGTCAAGCCAGAGTTACAAGGCAGCATACCATAAAGCCTTGGAGTATGCAAGAATCTAATAGTTTTGAGTTTTTCTCAAACTAA

Protein Analysis

142

Amino Acids

15.68

Weight (kDa)

5.27

Isoelectric Point (pI)

32.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024429)

Species Orthologous Gene IDs
malus_domestica MD00G1043900.v1.1
rosa_laevigata RLG00000029274
rosa_multiflora Rmu_co8430541.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 219
AcsI RAATTY 1 cut(s) 16
AgsI TTSAA 1 cut(s) 322
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 254
ApeKI GCWGC 1 cut(s) 364
ApoI RAATTY 1 cut(s) 16
AspLEI GCGC 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 80
BbvI GCAGC 1 cut(s) 376
BcgI CGANNNNNNTGC 2 cut(s) 273, 307
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 92
BisI GCNGC 1 cut(s) 365
BlsI GCNGC 1 cut(s) 366
BplI GAGNNNNNCTC 1 cut(s) 401
Bpu10I CCTNAGC 1 cut(s) 185
BpuEI CTTGAG 2 cut(s) 160, 325
BsaJI CCNNGG 1 cut(s) 380
Bse1I ACTGG 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 199
BseNI ACTGG 1 cut(s) 10
BseRI GAGGAG 2 cut(s) 76, 159
BseXI GCAGC 1 cut(s) 376
BsmAI GTCTC 1 cut(s) 254
BspACI CCGC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 198
BspHI TCATGA 1 cut(s) 37
BsrI ACTGG 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 380
BssT1I CCWWGG 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 185
BstHHI GCGC 1 cut(s) 104
BstMAI GTCTC 1 cut(s) 254
BstNSI RCATGY 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 133
CciI TCATGA 1 cut(s) 37
CfoI GCGC 1 cut(s) 104
CviAII CATG 2 cut(s) 38, 291
CviJI RGCY 3 cut(s) 184, 350, 379
CviKI_1 RGCY 3 cut(s) 184, 350, 379
DdeI CTNAG 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 380
EcoT14I CCWWGG 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 380
FaeI CATG 2 cut(s) 41, 294
FaiI YATR 5 cut(s) 39, 292, 369, 374, 389
FatI CATG 2 cut(s) 37, 290
Fnu4HI GCNGC 1 cut(s) 365
Fsp4HI GCNGC 1 cut(s) 365
FspBI CTAG 1 cut(s) 92
GlaI GCGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 365
HhaI GCGC 1 cut(s) 104
Hin1II CATG 2 cut(s) 41, 294
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 3 cut(s) 158, 208, 395
HphI GGTGA 1 cut(s) 80
Hpy188I TCNGA 2 cut(s) 213, 236
Hpy188III TCNNGA 3 cut(s) 38, 177, 187
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 3 cut(s) 32, 294, 391
HpyF3I CTNAG 1 cut(s) 185
Hsp92II CATG 2 cut(s) 41, 294
HspAI GCGC 1 cut(s) 102
LpnPI CCDG 4 cut(s) 23, 172, 243, 364
Lsp1109I GCAGC 1 cut(s) 376
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 68, 355
MluCI AATT 5 cut(s) 16, 97, 106, 136, 317
MmeI TCCRAC 2 cut(s) 214, 220
MnlI CCTC 4 cut(s) 55, 97, 137, 197
MseI TTAA 1 cut(s) 96
NlaIII CATG 2 cut(s) 41, 294
NmuCI GTSAC 1 cut(s) 68
NspI RCATGY 1 cut(s) 294
PagI TCATGA 1 cut(s) 37
PfeI GAWTC 3 cut(s) 158, 208, 395
PkrI GCNGC 1 cut(s) 366
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 365
SetI ASST 3 cut(s) 70, 186, 316
SmlI CTYRAG 2 cut(s) 175, 340
SmoI CTYRAG 2 cut(s) 175, 340
Sse9I AATT 5 cut(s) 16, 97, 106, 136, 317
SsiI CCGC 1 cut(s) 219
SspMI CTAG 1 cut(s) 92
StyI CCWWGG 1 cut(s) 380
TaqI TCGA 1 cut(s) 202
TasI AATT 5 cut(s) 16, 97, 106, 136, 317
TfiI GAWTC 3 cut(s) 158, 208, 395
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 1 cut(s) 364
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 26, 70
TspRI CASTG 1 cut(s) 133
XapI RAATTY 1 cut(s) 16
XceI RCATGY 1 cut(s) 294
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.