MD00G1057200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0021117
Physical Location & Seq
Reverse (-)
10591379 .. 10592086
708 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1057200.v1.1.491

Sequence Viewer

Length: 708 bp
ATGATAAGGACATTGAAGTTTGTAGTCTCAGTGTCTTTGCTGTGCTTGTTTCTTTTTGTAACATCATCAGGTTTTTGTTTACTTCCCGATTCTTCCAATCAGGTCAATGCCTATTTCTCCACATTGCTTTTGTCAATCTTTACCCACACCCTTGACAGGAAGTACATGTTTCTTATTTGTAATGGAATCCTTGCTTTTCTTGCAAAAACTTCGATTAATTCTTGCGGTTGCAGTTATAATGATGAATCCGATGAGCTTATGTCCGACCTCGGTGGAAAGTCTTCAACATCATCATCAGTTAATTCTAACTTATCTGAGATTGGGTCGTCTCTCGGCCAGGATGACATCGCTTATGTGGCTGACGAAGGAGAAGAAGAACCAACGTCGACTTCAGAAGAAGAAGAAGTTGGACAACTACAAGATCTAGAAAAACAACAAAATGGTTCGTTATATACAGAGAACCATGAAGAAATGCAGCCTGAAGCTTTCATTGCAGCAGCAGAAGAAGTCGGTCTGTCTTTGATGGAGCAAGGAGGAGAAGAAATGGAAACACAAGAGCTAGCAACAAATGTTGACGTTGGAGATGATCAGTACGGCTCGAAGATGAGCAGTACAGATGAATTGAACAAGAAATTCGAAGAGTTTATAAGAAAAATGAAGGAGGAAATCAGGATTGAAGCCCAACGCCAGCCCATTATTGCCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

25.95

Weight (kDa)

4.16

Isoelectric Point (pI)

53.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021117)

Species Orthologous Gene IDs
malus_domestica MD00G1057200.v1.1 MD10G1337100.v1.1
prunus_persica Prupe.4G006100_v2.0.a1
pyrus_communis pycom05g32650 pycom10g28650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 237, 647
AccI GTMKAC 1 cut(s) 386
AciI CCGC 2 cut(s) 225, 702
AcoI YGGCCR 1 cut(s) 334
AcsI RAATTY 1 cut(s) 632
AcuI CTGAAG 2 cut(s) 375, 501
AfaI GTAC 3 cut(s) 164, 593, 613
AfiI CCNNNNNNNGG 1 cut(s) 156
AflIII ACRYGT 1 cut(s) 165
AgsI TTSAA 4 cut(s) 16, 285, 625, 677
AjnI CCWGG 1 cut(s) 336
AjuI GAANNNNNNNTTGG 4 cut(s) 373, 390, 405, 422
AluBI AGCT 3 cut(s) 256, 485, 559
AluI AGCT 3 cut(s) 256, 485, 559
Alw26I GTCTC 2 cut(s) 31, 333
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 3 cut(s) 475, 494, 497
ApoI RAATTY 1 cut(s) 632
AseI ATTAAT 1 cut(s) 216
Asp700I GAANNNNTTC 1 cut(s) 280
AsuII TTCGAA 1 cut(s) 636
AsuNHI GCTAGC 1 cut(s) 559
BbsI GAAGAC 1 cut(s) 273
BbvI GCAGC 3 cut(s) 487, 506, 509
BccI CCATC 1 cut(s) 517
BceAI ACGGC 1 cut(s) 610
BcgI CGANNNNNNTGC 2 cut(s) 192, 226
BciT130I CCWGG 1 cut(s) 338
BclI TGATCA 1 cut(s) 586
BcoDI GTCTC 2 cut(s) 31, 333
BfaI CTAG 2 cut(s) 425, 560
BglII AGATCT 1 cut(s) 421
BisI GCNGC 4 cut(s) 476, 495, 498, 702
BlsI GCNGC 4 cut(s) 477, 496, 499, 703
Bme1390I CCNGG 1 cut(s) 338
BmrFI CCNGG 1 cut(s) 338
BmtI GCTAGC 1 cut(s) 563
BpiI GAAGAC 1 cut(s) 273
Bpu14I TTCGAA 1 cut(s) 636
BsaJI CCNNGG 1 cut(s) 268
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse3DI GCAATG 2 cut(s) 122, 489
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 1 cut(s) 268
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMI GCAATG 2 cut(s) 122, 489
BseMII CTCAG 2 cut(s) 42, 306
BseRI GAGGAG 1 cut(s) 549
BseXI GCAGC 3 cut(s) 487, 506, 509
BshFI GGCC 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 2 cut(s) 31, 333
BsmBI CGTCTC 1 cut(s) 333
BsnI GGCC 1 cut(s) 336
Bsp119I TTCGAA 1 cut(s) 636
Bsp143I GATC 2 cut(s) 421, 586
BspACI CCGC 2 cut(s) 225, 702
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 2 cut(s) 41, 307
BspOI GCTAGC 1 cut(s) 563
BspT104I TTCGAA 1 cut(s) 636
BsrDI GCAATG 2 cut(s) 122, 489
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 2 cut(s) 421, 586
Bst2UI CCWGG 1 cut(s) 338
Bst6I CTCTTC 1 cut(s) 633
BstBI TTCGAA 1 cut(s) 636
BstC8I GCNNGC 2 cut(s) 561, 689
BstDEI CTNAG 2 cut(s) 28, 315
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 2 cut(s) 424, 589
BstMAI GTCTC 2 cut(s) 31, 333
BstMBI GATC 2 cut(s) 421, 586
BstMWI GCNNNNNNNGC 3 cut(s) 200, 356, 491
BstNI CCWGG 1 cut(s) 338
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 336
BstV1I GCAGC 3 cut(s) 487, 506, 509
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuRI GGCC 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 331
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 2 cut(s) 561, 689
Csp6I GTAC 3 cut(s) 163, 592, 612
CviAII CATG 2 cut(s) 166, 464
CviJI RGCY 9 cut(s) 256, 336, 359, 478, 485, 559, 597, 680, 691
CviKI_1 RGCY 9 cut(s) 256, 336, 359, 478, 485, 559, 597, 680, 691
CviQI GTAC 3 cut(s) 163, 592, 612
DdeI CTNAG 2 cut(s) 28, 315
DpnI GATC 2 cut(s) 423, 588
DpnII GATC 2 cut(s) 421, 586
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 633
Eco57I CTGAAG 2 cut(s) 375, 501
EcoRII CCWGG 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 333
FaeI CATG 2 cut(s) 169, 467
FaiI YATR 8 cut(s) 167, 237, 260, 354, 451, 453, 465, 647
FatI CATG 2 cut(s) 165, 463
FbaI TGATCA 1 cut(s) 586
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 4 cut(s) 476, 495, 498, 702
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 4 cut(s) 476, 495, 498, 702
FspBI CTAG 2 cut(s) 425, 560
GluI GCNGC 4 cut(s) 476, 495, 498, 702
HaeIII GGCC 1 cut(s) 336
Hin1II CATG 2 cut(s) 169, 467
HincII GTYRAC 2 cut(s) 387, 574
HindII GTYRAC 2 cut(s) 387, 574
HindIII AAGCTT 1 cut(s) 483
HinfI GANTC 3 cut(s) 89, 186, 245
Hpy166II GTNNAC 3 cut(s) 80, 387, 574
Hpy188I TCNGA 4 cut(s) 250, 265, 316, 394
Hpy188III TCNNGA 3 cut(s) 86, 425, 670
Hpy8I GTNNAC 3 cut(s) 80, 387, 574
Hpy99I CGWCG 1 cut(s) 388
HpyAV CCTTC 2 cut(s) 359, 652
HpyCH4IV ACGT 2 cut(s) 383, 576
HpyCH4V TGCA 4 cut(s) 203, 231, 475, 494
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 356, 491
HpyF3I CTNAG 2 cut(s) 28, 315
HpySE526I ACGT 2 cut(s) 383, 576
Hsp92II CATG 2 cut(s) 169, 467
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 2 cut(s) 421, 586
LmnI GCTCC 1 cut(s) 526
LpnPI CCDG 8 cut(s) 54, 86, 142, 323, 350, 492, 655, 701
Lsp1109I GCAGC 3 cut(s) 487, 506, 509
MaeI CTAG 2 cut(s) 425, 560
MaeII ACGT 2 cut(s) 383, 576
MaeIII GTNAC 1 cut(s) 58
MalI GATC 2 cut(s) 423, 588
MboI GATC 2 cut(s) 421, 586
MflI RGATCY 1 cut(s) 421
MluCI AATT 4 cut(s) 217, 301, 620, 632
MmeI TCCRAC 3 cut(s) 288, 388, 559
MnlI CCTC 3 cut(s) 278, 527, 655
MroXI GAANNNNTTC 1 cut(s) 280
MseI TTAA 3 cut(s) 216, 300, 706
MspR9I CCNGG 1 cut(s) 338
MvaI CCWGG 1 cut(s) 338
MwoI GCNNNNNNNGC 3 cut(s) 200, 356, 491
NdeII GATC 2 cut(s) 421, 586
NheI GCTAGC 1 cut(s) 559
NlaIII CATG 2 cut(s) 169, 467
NmeAIII GCCGAG 1 cut(s) 312
NspI RCATGY 1 cut(s) 169
NspV TTCGAA 1 cut(s) 636
PciI ACATGT 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 280
PfeI GAWTC 3 cut(s) 89, 186, 245
PkrI GCNGC 4 cut(s) 477, 496, 499, 703
PscI ACATGT 1 cut(s) 165
PshBI ATTAAT 1 cut(s) 216
PsiI TTATAA 2 cut(s) 237, 647
Psp6I CCWGG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 336
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 3 cut(s) 164, 593, 613
RsaNI GTAC 3 cut(s) 163, 592, 612
SalI GTCGAC 1 cut(s) 385
SaqAI TTAA 3 cut(s) 216, 300, 706
SatI GCNGC 4 cut(s) 476, 495, 498, 702
Sau3AI GATC 2 cut(s) 421, 586
ScrFI CCNGG 1 cut(s) 338
SetI ASST 8 cut(s) 73, 105, 258, 270, 386, 487, 561, 579
SfuI TTCGAA 1 cut(s) 636
Sse9I AATT 4 cut(s) 217, 301, 620, 632
SsiI CCGC 2 cut(s) 225, 702
SspMI CTAG 2 cut(s) 425, 560
StyD4I CCNGG 1 cut(s) 336
TaiI ACGT 2 cut(s) 386, 579
TaqI TCGA 4 cut(s) 212, 386, 599, 636
TaqII GACCGA 1 cut(s) 500
TasI AATT 4 cut(s) 217, 301, 620, 632
TatI WGTACW 2 cut(s) 162, 611
TauI GCSGC 1 cut(s) 704
TfiI GAWTC 3 cut(s) 89, 186, 245
Tru1I TTAA 3 cut(s) 216, 300, 706
Tru9I TTAA 3 cut(s) 216, 300, 706
TscAI CASTG 1 cut(s) 36
TseI GCWGC 3 cut(s) 475, 494, 497
TspDTI ATGAA 5 cut(s) 258, 478, 480, 633, 671
TspRI CASTG 1 cut(s) 36
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 1 cut(s) 632
XbaI TCTAGA 1 cut(s) 424
XceI RCATGY 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 280
XspI CTAG 2 cut(s) 425, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.