Prupe.4G006100_v2.0.a1

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0021117
Physical Location & Seq
Reverse (-)
336990 .. 337972
983 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G006100.1

Sequence Viewer

Length: 510 bp
CTTGTTCTACTTGGGCCGGTTGTTGATGAAAAGGACTTTGAAGCTTCTACTCTCAGTCTCTTTGTTGTCTTTGTTTCTTCTTTGCTATTCTTCTTCATCAGTTTCAGTTGCAGCACCACCTCTATTAATAATCATAAATCCCACGATGAGTCTCTAGATCCGGACGCCATCGCTTATGCTGCTGGTGAAGATGAAGGGGAATCGCCAACTATACAAGAAGAAGATGACGACGACGGAGATGGACAACAGGAAGAACTTAAAAATGGGACTCTATTGCAGGCGGAAGAAATACCTCAAGCTTTTAGCGCAGAAGAAAAAGGAGGAGGAAGTGAATCTTTGATAAAGCAACGAGAAGAAGAGATGGACACACCAGAGCTGGAAACAAATCATGTTAATGACTACTTAGCCACTACTAGTACAGATGAACTCAACAAAAAATTCGAAGAATTTATAAGAAAAATGAAGGAGGAAATCAGGATTGAAGCTCAACGGCAACCCATTGCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

170

Amino Acids

18.87

Weight (kDa)

4.13

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021117)

Species Orthologous Gene IDs
malus_domestica MD00G1057200.v1.1 MD10G1337100.v1.1
prunus_persica Prupe.4G006100_v2.0.a1
pyrus_communis pycom05g32650 pycom10g28650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 452
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 1 cut(s) 281
AclWI GGATC 1 cut(s) 152
AcsI RAATTY 2 cut(s) 437, 446
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 1 cut(s) 418
AgsI TTSAA 2 cut(s) 41, 482
AhlI ACTAGT 1 cut(s) 413
AluBI AGCT 4 cut(s) 44, 299, 376, 485
AluI AGCT 4 cut(s) 44, 299, 376, 485
Alw26I GTCTC 2 cut(s) 62, 156
AlwI GGATC 1 cut(s) 152
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 2 cut(s) 111, 179
ApoI RAATTY 2 cut(s) 437, 446
AseI ATTAAT 1 cut(s) 126
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 197
AsuII TTCGAA 1 cut(s) 441
BbvI GCAGC 2 cut(s) 123, 166
BccI CCATC 3 cut(s) 176, 233, 355
BceAI ACGGC 2 cut(s) 488, 506
BcoDI GTCTC 2 cut(s) 62, 156
BcuI ACTAGT 1 cut(s) 413
BfaI CTAG 2 cut(s) 155, 414
BisI GCNGC 2 cut(s) 112, 180
BlsI GCNGC 2 cut(s) 113, 181
BmgT120I GGNCC 1 cut(s) 14
Bpu14I TTCGAA 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 160
Bse118I RCCGGY 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 498
BseAI TCCGGA 1 cut(s) 160
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 1 cut(s) 67
BseRI GAGGAG 1 cut(s) 336
BseXI GCAGC 2 cut(s) 123, 166
BshFI GGCC 1 cut(s) 16
BsiSI CCGG 2 cut(s) 17, 161
BslFI GGGAC 1 cut(s) 280
BsmAI GTCTC 2 cut(s) 62, 156
BsmFI GGGAC 1 cut(s) 280
BsnI GGCC 1 cut(s) 16
Bsp119I TTCGAA 1 cut(s) 441
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 281
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 66
BspEI TCCGGA 1 cut(s) 160
BspPI GGATC 1 cut(s) 152
BspT104I TTCGAA 1 cut(s) 441
BsrDI GCAATG 1 cut(s) 498
BsrFI RCCGGY 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 16
BssMI GATC 1 cut(s) 157
BssNI GRCGYC 1 cut(s) 165
Bst6I CTCTTC 1 cut(s) 351
BstACI GRCGYC 1 cut(s) 165
BstBI TTCGAA 1 cut(s) 441
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 2 cut(s) 53, 403
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 2 cut(s) 62, 156
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 179, 305
BstV1I GCAGC 2 cut(s) 123, 166
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 1 cut(s) 16
BtgZI GCGATG 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 279
CfoI GCGC 1 cut(s) 308
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 14
CseI GACGC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 417
CviAII CATG 1 cut(s) 389
CviJI RGCY 6 cut(s) 16, 44, 299, 376, 407, 485
CviKI_1 RGCY 6 cut(s) 16, 44, 299, 376, 407, 485
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 2 cut(s) 53, 403
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
EciI GGCGGA 1 cut(s) 296
FaeI CATG 1 cut(s) 392
FaiI YATR 5 cut(s) 135, 177, 212, 390, 452
FalI AAGNNNNNCTT 2 cut(s) 319, 351
FaqI GGGAC 1 cut(s) 280
FatI CATG 1 cut(s) 388
Fnu4HI GCNGC 2 cut(s) 112, 180
Fsp4HI GCNGC 2 cut(s) 112, 180
FspBI CTAG 2 cut(s) 155, 414
GlaI GCGC 1 cut(s) 307
GluI GCNGC 2 cut(s) 112, 180
HaeIII GGCC 1 cut(s) 16
HapII CCGG 2 cut(s) 17, 161
HgaI GACGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 308
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 1 cut(s) 392
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HindIII AAGCTT 2 cut(s) 42, 297
HinfI GANTC 4 cut(s) 149, 200, 268, 332
HpaII CCGG 2 cut(s) 17, 161
HphI GGTGA 1 cut(s) 197
Hpy188III TCNNGA 3 cut(s) 155, 161, 475
Hpy99I CGWCG 2 cut(s) 233, 236
HpyAV CCTTC 2 cut(s) 188, 457
HpyCH4V TGCA 2 cut(s) 111, 277
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 305
HpyF3I CTNAG 2 cut(s) 53, 403
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 1 cut(s) 392
HspAI GCGC 1 cut(s) 306
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 8 cut(s) 30, 168, 174, 233, 263, 362, 384, 460
Lsp1109I GCAGC 2 cut(s) 123, 166
MaeI CTAG 2 cut(s) 155, 414
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MflI RGATCY 1 cut(s) 157
MluCI AATT 2 cut(s) 437, 446
MlyI GAGTC 2 cut(s) 158, 262
MnlI CCTC 5 cut(s) 130, 303, 314, 317, 460
MroI TCCGGA 1 cut(s) 160
MseI TTAA 4 cut(s) 126, 258, 393, 508
MslI CAYNNNNRTG 1 cut(s) 393
MspI CCGG 2 cut(s) 17, 161
MwoI GCNNNNNNNGC 2 cut(s) 179, 305
NdeII GATC 1 cut(s) 157
NlaIII CATG 1 cut(s) 392
NspV TTCGAA 1 cut(s) 441
PfeI GAWTC 2 cut(s) 200, 332
PkrI GCNGC 2 cut(s) 113, 181
PleI GAGTC 2 cut(s) 157, 262
PpsI GAGTC 2 cut(s) 157, 262
PshBI ATTAAT 1 cut(s) 126
PsiI TTATAA 1 cut(s) 452
PspPI GGNCC 1 cut(s) 14
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
RseI CAYNNNNRTG 1 cut(s) 393
SaqAI TTAA 4 cut(s) 126, 258, 393, 508
SatI GCNGC 2 cut(s) 112, 180
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 2 cut(s) 158, 262
SetI ASST 6 cut(s) 46, 122, 295, 301, 378, 487
SfuI TTCGAA 1 cut(s) 441
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
SpeI ACTAGT 1 cut(s) 413
Sse9I AATT 2 cut(s) 437, 446
SsiI CCGC 1 cut(s) 281
SspMI CTAG 2 cut(s) 155, 414
TaqI TCGA 1 cut(s) 441
TasI AATT 2 cut(s) 437, 446
TatI WGTACW 1 cut(s) 416
TfiI GAWTC 2 cut(s) 200, 332
Tru1I TTAA 4 cut(s) 126, 258, 393, 508
Tru9I TTAA 4 cut(s) 126, 258, 393, 508
TseI GCWGC 2 cut(s) 111, 179
TspDTI ATGAA 5 cut(s) 42, 85, 207, 438, 476
TspGWI ACGGA 1 cut(s) 249
VspI ATTAAT 1 cut(s) 126
XapI RAATTY 2 cut(s) 437, 446
XbaI TCTAGA 1 cut(s) 154
XspI CTAG 2 cut(s) 155, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.