Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0022208

Physical Location & Seq

Genomic Coordinates Reverse (-)

19095981 .. 19097409

Gene Structure 1429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1091400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGATTCATGTGCGATGCACTGTGCGCTGTAACCTGAGGGTAGCTCAAGTGCTGGAGATGATCCAGCACAGGCATTATACACAGAAAGTTGACGTTTATAGCTTTGGGATAGTTCTTTGGGAACTTATAACAGGGATGCTTCCATTCCAGAACATGACAGCGGTACAGGCAGCATTTGCAGTTGTGAATAAAGGTGTCCGCCCTAACATTCCGAATGACTGCTTACCTGTTCTTTGTGAGATCATGATGAGATGTTGGGATGTAAACCCTGATGTGAGGCCATCCTTCACTGAAGTCGTTAGAATACTCGAGCATGCGGAGACAGAGATCATGACGACTGTTCGGAAGGCCCGGTTCAGGTGTTGCATTAGCCAACCAATGACAACGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

131

Amino Acids

15.04

Weight (kDa)

8.22

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	18 - 103	3.2e-22	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	19 - 100	7.2e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0022208)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00150
malus_domestica	MD00G1091400.v1.1
pyrus_communis	pycom420g00220
rosa_wichuraiana	Rw0G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	128
AciI	CCGC	3 cut(s)	161, 199, 317
AclWI	GGATC	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	357
AluBI	AGCT	2 cut(s)	44, 102
AluI	AGCT	2 cut(s)	44, 102
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	55
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	2 cut(s)	278, 348
ApeKI	GCWGC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	349
AsuC2I	CCSGG	1 cut(s)	352
AvaI	CYCGRG	1 cut(s)	308
AxyI	CCTNAGG	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	1 cut(s)	289
BcnI	CCSGG	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	314
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	352
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	2 cut(s)	5, 126
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BpmI	CTGGAG	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse21I	CCTNAGG	1 cut(s)	35
BseGI	GGATG	3 cut(s)	141, 265, 281
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	182
BshFI	GGCC	2 cut(s)	280, 350
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	1 cut(s)	314
BsnI	GGCC	2 cut(s)	280, 350
BsoBI	CYCGRG	1 cut(s)	308
Bsp143I	GATC	3 cut(s)	60, 240, 327
BspACI	CCGC	3 cut(s)	161, 199, 317
BspANI	GGCC	2 cut(s)	280, 350
BspCNI	CTCAG	1 cut(s)	27
BspHI	TCATGA	2 cut(s)	243, 330
BspPI	GGATC	1 cut(s)	55
BssMI	GATC	3 cut(s)	60, 240, 327
Bst4CI	ACNGT	2 cut(s)	22, 340
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	3 cut(s)	141, 265, 281
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	3 cut(s)	63, 243, 330
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	3 cut(s)	60, 240, 327
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 167, 176
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	350
BstV1I	GCAGC	1 cut(s)	182
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	2 cut(s)	280, 350
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	3 cut(s)	141, 265, 281
BtsIMutI	CAGTG	2 cut(s)	18, 288
Cac8I	GCNNGC	1 cut(s)	315
CciI	TCATGA	2 cut(s)	243, 330
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	349
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	5 cut(s)	8, 154, 244, 314, 331
CviJI	RGCY	5 cut(s)	44, 102, 280, 350, 372
CviKI_1	RGCY	5 cut(s)	44, 102, 280, 350, 372
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	3 cut(s)	62, 242, 329
DpnII	GATC	3 cut(s)	60, 240, 327
EciI	GGCGGA	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	312
Eco81I	CCTNAGG	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	308
FaeI	CATG	5 cut(s)	11, 157, 247, 317, 334
FaiI	YATR	8 cut(s)	9, 78, 99, 128, 155, 245, 315, 332
FatI	CATG	5 cut(s)	7, 153, 243, 313, 330
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	3 cut(s)	148, 268, 272
Fsp4HI	GCNGC	1 cut(s)	171
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	171
GsuI	CTGGAG	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	280, 350
HapII	CCGG	1 cut(s)	352
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	5 cut(s)	11, 157, 247, 317, 334
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	352
Hpy166II	GTNNAC	2 cut(s)	91, 265
Hpy188I	TCNGA	2 cut(s)	213, 345
Hpy188III	TCNNGA	3 cut(s)	148, 244, 331
Hpy8I	GTNNAC	2 cut(s)	91, 265
HpyAV	CCTTC	2 cut(s)	295, 340
HpyCH4III	ACNGT	2 cut(s)	22, 340
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	3 cut(s)	18, 179, 366
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 167, 176
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	5 cut(s)	11, 157, 247, 317, 334
HspAI	GCGC	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	60, 240, 327
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	2 cut(s)	5, 126
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	3 cut(s)	62, 242, 329
MboI	GATC	3 cut(s)	60, 240, 327
MnlI	CCTC	2 cut(s)	30, 270
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	1 cut(s)	352
MspR9I	CCNGG	1 cut(s)	352
MwoI	GCNNNNNNNGC	3 cut(s)	24, 167, 176
NciI	CCSGG	1 cut(s)	352
NdeII	GATC	3 cut(s)	60, 240, 327
NlaIII	CATG	5 cut(s)	11, 157, 247, 317, 334
NspI	RCATGY	1 cut(s)	317
PaeI	GCATGC	1 cut(s)	317
PaeR7I	CTCGAG	1 cut(s)	308
PagI	TCATGA	2 cut(s)	243, 330
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	172
PsiI	TTATAA	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	349
PspXI	VCTCGAGB	1 cut(s)	308
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	3 cut(s)	60, 240, 327
Sau96I	GGNCC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	352
SetI	ASST	7 cut(s)	36, 46, 96, 104, 196, 229, 362
SfaNI	GCATC	2 cut(s)	5, 126
Sfr274I	CTCGAG	1 cut(s)	308
SlaI	CTCGAG	1 cut(s)	308
SmlI	CTYRAG	2 cut(s)	45, 308
SmoI	CTYRAG	2 cut(s)	45, 308
SphI	GCATGC	1 cut(s)	317
SsiI	CCGC	3 cut(s)	161, 199, 317
StyD4I	CCNGG	1 cut(s)	350
TaaI	ACNGT	2 cut(s)	22, 340
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	2 cut(s)	25, 295
TseI	GCWGC	1 cut(s)	170
TspRI	CASTG	2 cut(s)	25, 295
XceI	RCATGY	1 cut(s)	317
XhoI	CTCGAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.