Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01020

Orthogroup ID

OG0022208

Physical Location & Seq

Genomic Coordinates Forward (+)

29569 .. 33944

Gene Structure 4376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G021970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCATATGTTCATGGGCTCGGCCTGATTCACAGGGACTTGAAATCTGACAACCTTTTGATTTTTTCAGACAAATCAATTAAAATAGCTGATTTTGGGGTTGCCCGTATTGAGGTGCAGACGGAAGGAATGACACCAGAGACAGGGACATACCGCTGGATGGCTCCGGAGATGATCCAGCATCGGCCGTACACTCAGAAAGTTGATGTTTACAGCTTTGGGATTGTTCTTTGGGAACTTATTACAGGGATGCTTCCGTTCTCGAAAATGACAGCAGTGCAGGCAGCATTTGCAGTTGTCAATAAGGGTGTCCGTCCTATCATTCCTGCTGACTGCTTAACTGTTCTTGGTGAGATAATGACGAGATGCTGGGATCCCAACCCTGATGCCAGGCCACCCTTCACTGATGTGGTAAGAATGCTCGAGAGTGCAGAGACAGAGATCATGACAACCGTTCGGAAGGCTCGTTTCAGGTGTTGCATGACCCAACCAATGACAGCCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

168

Amino Acids

18.97

Weight (kDa)

6.3

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 141	4.5e-38	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	1 - 138	5.8e-32	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0022208)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00150
malus_domestica	MD00G1091400.v1.1
pyrus_communis	pycom420g00220
rosa_wichuraiana	Rw0G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	1 cut(s)	154
AclWI	GGATC	3 cut(s)	169, 368, 381
AcoI	YGGCCR	1 cut(s)	185
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	3 cut(s)	112, 143, 160
AgsI	TTSAA	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	389
AleI	CACNNNNGTG	1 cut(s)	407
AluBI	AGCT	2 cut(s)	89, 216
AluI	AGCT	2 cut(s)	89, 216
Alw26I	GTCTC	2 cut(s)	134, 428
AlwI	GGATC	3 cut(s)	169, 368, 381
Ama87I	CYCGRG	1 cut(s)	422
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	3 cut(s)	22, 185, 392
ApeKI	GCWGC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	422
BamHI	GGATCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	391
BcoDI	GTCTC	2 cut(s)	134, 428
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	1 cut(s)	391
BmeT110I	CYCGRG	1 cut(s)	422
BmiI	GGNNCC	2 cut(s)	165, 375
BmrFI	CCNGG	1 cut(s)	391
BmsI	GCATC	4 cut(s)	190, 240, 356, 376
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 143, 160
BseAI	TCCGGA	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	391
BseGI	GGATG	2 cut(s)	165, 255
BseLI	CCNNNNNNNGG	3 cut(s)	112, 143, 160
BseMII	CTCAG	1 cut(s)	209
BseX3I	CGGCCG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	296
BseYI	CCCAGC	1 cut(s)	369
BsgI	GTGCAG	3 cut(s)	137, 299, 450
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	3 cut(s)	24, 187, 394
BsiEI	CGRYCG	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	2 cut(s)	50, 160
BslI	CCNNNNNNNGG	3 cut(s)	112, 143, 160
BsmAI	GTCTC	2 cut(s)	134, 428
BsmFI	GGGAC	2 cut(s)	50, 160
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	3 cut(s)	24, 187, 394
BsoBI	CYCGRG	1 cut(s)	422
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	3 cut(s)	174, 373, 441
BspACI	CCGC	1 cut(s)	154
BspANI	GGCC	3 cut(s)	24, 187, 394
BspCNI	CTCAG	1 cut(s)	208
BspEI	TCCGGA	1 cut(s)	166
BspHI	TCATGA	1 cut(s)	444
BspLI	GGNNCC	2 cut(s)	165, 375
BspPI	GGATC	3 cut(s)	169, 368, 381
BssMI	GATC	3 cut(s)	174, 373, 441
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	2 cut(s)	343, 454
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	165, 255
BstKTI	GATC	3 cut(s)	177, 376, 444
BstMAI	GTCTC	2 cut(s)	134, 428
BstMBI	GATC	3 cut(s)	174, 373, 441
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 290
BstNI	CCWGG	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	389
BstV1I	GCAGC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BstZI	CGGCCG	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	24, 187, 394
BtsCI	GGATG	2 cut(s)	165, 255
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	2 cut(s)	282, 402
Cac8I	GCNNGC	1 cut(s)	282
CciI	TCATGA	1 cut(s)	444
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	3 cut(s)	14, 445, 481
CviJI	RGCY	9 cut(s)	19, 24, 89, 164, 187, 216, 394, 464, 500
CviKI_1	RGCY	9 cut(s)	19, 24, 89, 164, 187, 216, 394, 464, 500
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	3 cut(s)	176, 375, 443
DpnII	GATC	3 cut(s)	174, 373, 441
EaeI	YGGCCR	1 cut(s)	185
EagI	CGGCCG	1 cut(s)	185
EclXI	CGGCCG	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	21
Eco52I	CGGCCG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	389
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	3 cut(s)	17, 448, 484
FaiI	YATR	6 cut(s)	7, 9, 15, 151, 446, 482
FaqI	GGGAC	2 cut(s)	50, 160
FatI	CATG	3 cut(s)	13, 444, 480
FauNDI	CATATG	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	2 cut(s)	172, 262
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	285
GluI	GCNGC	1 cut(s)	285
GsaI	CCCAGC	1 cut(s)	373
HaeIII	GGCC	3 cut(s)	24, 187, 394
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	3 cut(s)	17, 448, 484
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	2 cut(s)	192, 211
Hpy188I	TCNGA	4 cut(s)	49, 70, 198, 459
Hpy188III	TCNNGA	4 cut(s)	167, 262, 424, 445
Hpy8I	GTNNAC	2 cut(s)	192, 211
HpyAV	CCTTC	3 cut(s)	119, 409, 454
HpyCH4III	ACNGT	2 cut(s)	343, 454
HpyCH4V	TGCA	5 cut(s)	118, 280, 293, 431, 480
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 290
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	17, 448, 484
Kpn2I	TCCGGA	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	174, 373, 441
LmnI	GCTCC	1 cut(s)	169
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	4 cut(s)	190, 240, 356, 376
MalI	GATC	3 cut(s)	176, 375, 443
MboI	GATC	3 cut(s)	174, 373, 441
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	1 cut(s)	78
MnlI	CCTC	1 cut(s)	106
MroI	TCCGGA	1 cut(s)	166
MseI	TTAA	2 cut(s)	81, 338
MslI	CAYNNNNRTG	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	391
Mva1269I	GAATGC	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	391
MwoI	GCNNNNNNNGC	2 cut(s)	281, 290
NdeI	CATATG	1 cut(s)	7
NdeII	GATC	3 cut(s)	174, 373, 441
NlaIII	CATG	3 cut(s)	17, 448, 484
NlaIV	GGNNCC	2 cut(s)	165, 375
OliI	CACNNNNGTG	1 cut(s)	407
PaeR7I	CTCGAG	1 cut(s)	422
PagI	TCATGA	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	1 cut(s)	463
PctI	GAATGC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	389
PspFI	CCCAGC	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	2 cut(s)	165, 375
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	407
SaqAI	TTAA	2 cut(s)	81, 338
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	3 cut(s)	174, 373, 441
ScrFI	CCNGG	1 cut(s)	391
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	5 cut(s)	57, 91, 117, 218, 476
SfaNI	GCATC	4 cut(s)	190, 240, 356, 376
Sfr274I	CTCGAG	1 cut(s)	422
SlaI	CTCGAG	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	1 cut(s)	154
StyD4I	CCNGG	1 cut(s)	389
TaaI	ACNGT	2 cut(s)	343, 454
TaqI	TCGA	2 cut(s)	263, 423
TasI	AATT	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	2 cut(s)	81, 338
Tru9I	TTAA	2 cut(s)	81, 338
TscAI	CASTG	2 cut(s)	282, 409
TseI	GCWGC	1 cut(s)	284
TspGWI	ACGGA	3 cut(s)	137, 246, 302
TspRI	CASTG	2 cut(s)	282, 409
XhoI	CTCGAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.