Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002019

Physical Location & Seq

Genomic Coordinates Reverse (-)

160994 .. 171653

Gene Structure 10660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAGCAACAGTTTCAACAGGAAGTCAAGATGTTGGCTACCTTGAAGCATCCAAACATAGTTCGTTTTATCGGTGGTTGCCGTAAACCAATGGTTTGGTGCATTGTAACAGAGTATGCTAAGGGTGGTTCAGTACGACAATTTTTGATGAAGCGGCAGAGCCGATCAGTTCCGTTGAAGTTAGCAGTCAAGCAAGCTTTGGATGTTGCAAGGGGGATGGCATATGTCCATGGGCTCGGGCTGATTCACAGGGACTTGAAATCTGACAACCTTTTGATATTTTCAGACAAATCCATTAAAATTGCTGATTTTGGGGTTGCCCGTATTGAGGTGCAGACGGAAGGAATGACACCAGAGACTGGGACATACCGCTGGATGGCTCCGGAGATGATCCAGCATCGACCATACACTCAGAAAGTTGATGTTTACAGCTTTGGGATTGTTCTTTGGGAGCTTATTACAGGGATGCTTCCGTTCTCAAAAATGACAGCAGTGCAGGCAGCTTTTGCAGTTGTCAATAAGGGTGTCCGTCCTATCATTCCCCCTGACTGCTTAACTGTTCTTGGTGAGATAATGACGAGATGCTGGGATGCCAACCCTGATGCCAGGCCACCCTTCTCCGAGGTGGTAAGAATGCTCGAGATTGCAGAGACAGAGATCATGACAACTGTGCGGAAGGCCCGTTTCAGGTGTTGCATGACCCAACCAATGACAACCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

241

Amino Acids

27.24

Weight (kDa)

9.28

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	3 - 213	3.6e-59	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	3 - 211	1.4e-47	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24360 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170
fragaria_vesca	FvH4_4g00150 FvH4_4g00150 FvH4_4g00150 FvH4_4g00150
malus_domestica	MD00G1091600.v1.1 MD04G1001200.v1.1 MD04G1001300.v1.1 MD13G1286000.v1.1
prunus_persica	Prupe.1G001200_v2.0.a1 Prupe.1G001300_v2.0.a1
pyrus_communis	pycom04g00180 pycom04g00190 pycom420g00210
rosa_chinensis	RchiOBHm_Chr3g0494021 RchiOBHm_Chr4g0384771
rosa_laevigata	RLG00000010273 RLG00000022687
rosa_multiflora	Rmu_sc0001322.1_g000022 Rmu_sc0003412.1_g000004
rosa_roxburghii	Rroxscaffold_5G00332830 Rroxscaffold_6G00391360
rosa_rugosa	Rorug03G0263700 Rorug03G0297500 Rorug03G0297500
rosa_samantha	Rh3AG313300 Rh3BG349400 Rh3CG346200 Rh3DG348700 Rh4AG001100 Rh4BG001000 Rh4CG000900 Rh4DG001000
rosa_wichuraiana	Rw3G027420 Rw4G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	359
AccIII	TCCGGA	1 cut(s)	382
AciI	CCGC	3 cut(s)	154, 370, 673
AclWI	GGATC	1 cut(s)	385
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	4 cut(s)	328, 359, 376, 687
AgsI	TTSAA	4 cut(s)	17, 46, 178, 259
AjnI	CCWGG	1 cut(s)	605
AluBI	AGCT	4 cut(s)	197, 432, 454, 503
AluI	AGCT	4 cut(s)	197, 432, 454, 503
Alw26I	GTCTC	2 cut(s)	350, 644
AlwI	GGATC	1 cut(s)	385
AlwNI	CAGNNNCTG	1 cut(s)	359
Ama87I	CYCGRG	2 cut(s)	236, 638
Aor13HI	TCCGGA	1 cut(s)	382
AoxI	GGCC	2 cut(s)	608, 678
ApeKI	GCWGC	1 cut(s)	500
AspS9I	GGNCC	1 cut(s)	679
AsuHPI	GGTGA	1 cut(s)	578
AvaI	CYCGRG	2 cut(s)	236, 638
BanII	GRGCYC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	512
BccI	CCATC	2 cut(s)	211, 370
BceAI	ACGGC	1 cut(s)	66
BciT130I	CCWGG	1 cut(s)	607
BcoDI	GTCTC	2 cut(s)	350, 644
BisI	GCNGC	2 cut(s)	155, 501
BlsI	GCNGC	2 cut(s)	156, 502
Bme1390I	CCNGG	1 cut(s)	607
BmeT110I	CYCGRG	2 cut(s)	236, 638
BmgT120I	GGNCC	1 cut(s)	679
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	607
BmrI	ACTGGG	1 cut(s)	369
BmsI	GCATC	6 cut(s)	58, 406, 456, 572, 580, 592
BmuI	ACTGGG	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	229, 621
BsaWI	WCCGGW	1 cut(s)	382
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	4 cut(s)	328, 359, 376, 687
Bse1I	ACTGG	1 cut(s)	364
BseAI	TCCGGA	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	607
BseDI	CCNNGG	2 cut(s)	229, 621
BseGI	GGATG	6 cut(s)	49, 208, 222, 381, 471, 595
BseLI	CCNNNNNNNGG	4 cut(s)	328, 359, 376, 687
BseMII	CTCAG	1 cut(s)	425
BseNI	ACTGG	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	512
BseYI	CCCAGC	1 cut(s)	585
BsgI	GTGCAG	2 cut(s)	353, 515
BshFI	GGCC	2 cut(s)	610, 680
BsiHKCI	CYCGRG	2 cut(s)	236, 638
BsiSI	CCGG	1 cut(s)	383
BslFI	GGGAC	2 cut(s)	266, 376
BslI	CCNNNNNNNGG	4 cut(s)	328, 359, 376, 687
BsmAI	GTCTC	2 cut(s)	350, 644
BsmFI	GGGAC	2 cut(s)	266, 376
BsmI	GAATGC	1 cut(s)	639
BsnI	GGCC	2 cut(s)	610, 680
BsoBI	CYCGRG	2 cut(s)	236, 638
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp13I	TCCGGA	1 cut(s)	382
Bsp143I	GATC	3 cut(s)	164, 390, 657
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	3 cut(s)	154, 370, 673
BspANI	GGCC	2 cut(s)	610, 680
BspCNI	CTCAG	1 cut(s)	424
BspEI	TCCGGA	1 cut(s)	382
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	229, 621
BssMI	GATC	3 cut(s)	164, 390, 657
BssT1I	CCWWGG	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	607
Bst4CI	ACNGT	3 cut(s)	12, 559, 670
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstC8I	GCNNGC	2 cut(s)	195, 498
BstDEI	CTNAG	2 cut(s)	120, 411
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	6 cut(s)	49, 208, 222, 381, 471, 595
BstKTI	GATC	3 cut(s)	167, 393, 660
BstMAI	GTCTC	2 cut(s)	350, 644
BstMBI	GATC	3 cut(s)	164, 390, 657
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 506
BstNI	CCWGG	1 cut(s)	607
BstSCI	CCNGG	1 cut(s)	605
BstV1I	GCAGC	1 cut(s)	512
BstXI	CCANNNNNNTGG	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	610, 680
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	6 cut(s)	49, 208, 222, 381, 471, 595
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	2 cut(s)	195, 498
CaiI	CAGNNNCTG	1 cut(s)	359
CciI	TCATGA	1 cut(s)	660
Cfr13I	GGNCC	1 cut(s)	679
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	3 cut(s)	230, 661, 697
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	2 cut(s)	120, 411
DpnI	GATC	3 cut(s)	166, 392, 659
DpnII	GATC	3 cut(s)	164, 390, 657
Eco130I	CCWWGG	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	237
Eco88I	CYCGRG	2 cut(s)	236, 638
EcoRII	CCWGG	1 cut(s)	605
EcoT14I	CCWWGG	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	3 cut(s)	233, 664, 700
FaiI	YATR	9 cut(s)	59, 117, 223, 225, 231, 367, 406, 662, 698
FaqI	GGGAC	2 cut(s)	266, 376
FatI	CATG	3 cut(s)	229, 660, 696
FauNDI	CATATG	1 cut(s)	223
Fnu4HI	GCNGC	2 cut(s)	155, 501
FokI	GGATG	6 cut(s)	36, 215, 229, 388, 478, 602
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	2 cut(s)	155, 501
GluI	GCNGC	2 cut(s)	155, 501
GsaI	CCCAGC	1 cut(s)	589
HaeIII	GGCC	2 cut(s)	610, 680
HapII	CCGG	1 cut(s)	383
Hin1II	CATG	3 cut(s)	233, 664, 700
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	1 cut(s)	578
Hpy166II	GTNNAC	2 cut(s)	86, 427
Hpy188I	TCNGA	4 cut(s)	265, 286, 414, 622
Hpy188III	TCNNGA	4 cut(s)	28, 383, 640, 661
Hpy8I	GTNNAC	2 cut(s)	86, 427
HpyAV	CCTTC	3 cut(s)	335, 625, 670
HpyCH4III	ACNGT	3 cut(s)	12, 559, 670
HpyCH4V	TGCA	7 cut(s)	102, 209, 334, 496, 509, 647, 696
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 506
HpyF3I	CTNAG	2 cut(s)	120, 411
Hsp92II	CATG	3 cut(s)	233, 664, 700
Kpn2I	TCCGGA	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	164, 390, 657
LmnI	GCTCC	3 cut(s)	4, 385, 451
Lsp1109I	GCAGC	1 cut(s)	512
LweI	GCATC	6 cut(s)	58, 406, 456, 572, 580, 592
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	3 cut(s)	166, 392, 659
MboI	GATC	3 cut(s)	164, 390, 657
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	2 cut(s)	140, 300
MnlI	CCTC	2 cut(s)	322, 616
MroI	TCCGGA	1 cut(s)	382
MseI	TTAA	2 cut(s)	297, 554
MspA1I	CMGCKG	1 cut(s)	372
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	607
Mva1269I	GAATGC	1 cut(s)	639
MvaI	CCWGG	1 cut(s)	607
MwoI	GCNNNNNNNGC	2 cut(s)	497, 506
NcoI	CCATGG	1 cut(s)	229
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	3 cut(s)	164, 390, 657
NlaIII	CATG	3 cut(s)	233, 664, 700
NlaIV	GGNNCC	1 cut(s)	381
PaeR7I	CTCGAG	1 cut(s)	638
PagI	TCATGA	1 cut(s)	660
PctI	GAATGC	1 cut(s)	639
PfeI	GAWTC	1 cut(s)	244
PflMI	CCANNNNNTGG	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	156, 502
Psp6I	CCWGG	1 cut(s)	605
PspFI	CCCAGC	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	605
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	679
PstNI	CAGNNNCTG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	297, 554
SatI	GCNGC	2 cut(s)	155, 501
Sau3AI	GATC	3 cut(s)	164, 390, 657
Sau96I	GGNCC	1 cut(s)	679
ScrFI	CCNGG	1 cut(s)	607
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	9 cut(s)	44, 199, 273, 333, 434, 456, 505, 627, 692
SfaNI	GCATC	6 cut(s)	58, 406, 456, 572, 580, 592
Sfr274I	CTCGAG	1 cut(s)	638
SlaI	CTCGAG	1 cut(s)	638
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
Sse9I	AATT	2 cut(s)	140, 300
SsiI	CCGC	3 cut(s)	154, 370, 673
StyD4I	CCNGG	1 cut(s)	605
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	3 cut(s)	12, 559, 670
TaqI	TCGA	2 cut(s)	400, 639
TasI	AATT	2 cut(s)	140, 300
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	2 cut(s)	297, 554
Tru9I	TTAA	2 cut(s)	297, 554
TscAI	CASTG	1 cut(s)	498
TseI	GCWGC	1 cut(s)	500
TspDTI	ATGAA	1 cut(s)	164
TspGWI	ACGGA	4 cut(s)	162, 353, 462, 518
TspRI	CASTG	1 cut(s)	498
Van91I	CCANNNNNTGG	1 cut(s)	359
XhoI	CTCGAG	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.