Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002019

Physical Location & Seq

Genomic Coordinates Forward (+)

1563967 .. 1567516

Gene Structure 3550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G000780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTTGGAAGGTGGTGCCAAGTTCACTGGAATCATAGGTCTAAACAACAACGATAACAACTACTATGATTTGTCTCAAGTCTTTTACCACAAACTCCATGAGGGTGAGGGTGAGGGTACTAACATGTCCATTGACAGCATGCAAACTAGCGTTGATGGAGGCTCTGTCGCCATGTCTATAGATAACAGCAGCGTTGCTTCTAATACTAATGATTCCCACACACGCATCTTGAACCACCAGGGCCTGCGCCGACGCACAAATGACAACTACTCTGTTGCACAAAGTGTTAATCGCGGAAGAGTCACCCATGCACTCAGTGATGATCAGCTTGCCTGTGCTCTAATGGACAGCAATTCCGTCACGGAGGGCCTTGAGAATTATGAGGCCTGGACAATTGACTTAAGAAAGCTAAACATGGGTGACGCTTTTGCACAAGGTGCTTTTGGGAAGCTATACAGAGGTACTTACAACGGAGAGGATGTTGCTATCAAAATTTTGGAGAGGCCTGAGAATGACCCAGAAAAGGCTCAGATAATGGAGCAACAGTTTCAACAGGAAGTCAAGATGTTGGCTACGTTGAAGCATCCAAACATAGTTCGTTTTATTGGTGGCTGCCGTAAACCAATGGTTTGGTGCATTGTAACAGAGTATGCTAAGGGTGGTTCAGTACGGCAATTCTTGATGAGGCGGCAGAGCCGATCAGTTCCGTTGAAGTTAGCAGTCAAGCAAGCTTTGGATGTTGCAAGGGGGATGGCATATGTTCATGGGCTCGGCCTGATTCACAGGGACTTGAAATCTGACAACCTTTTGATTTTTTCAGACAAATCAATTAAAATAGCTGATTTTGGGGTTGCCCGTATTGAGGTGCAGACGGAAGGAATGACACCAGAGACAGGGACATACCGCTGGATGGCTCCGGATGCTTCCTTCTCGAAAATGACAGCAGTGCAGGCAGCATTTGCAGTTGTCAATAAGGGTGTCCGTCCTATCATTCCTGCTGACTGCTTAACTGTTCTTGGTGAGATAATGACGAGATGCTGGGATCCCAACCCTGATGCCAGGCCACCCTTCACTGATGTGGTAAGAATGCTCGAGAGTGCAGAGACAGAGATCATGACAACCGTTCGGAAGGCTCGTTTCAGGTGTTGCATGACCCAACCAATGACAGCCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

391

Amino Acids

43.49

Weight (kDa)

6.47

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	138 - 313	1.3e-37	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	145 - 308	2.5e-36	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24360 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170
fragaria_vesca	FvH4_4g00150 FvH4_4g00150 FvH4_4g00150 FvH4_4g00150
malus_domestica	MD00G1091600.v1.1 MD04G1001200.v1.1 MD04G1001300.v1.1 MD13G1286000.v1.1
prunus_persica	Prupe.1G001200_v2.0.a1 Prupe.1G001300_v2.0.a1
pyrus_communis	pycom04g00180 pycom04g00190 pycom420g00210
rosa_chinensis	RchiOBHm_Chr3g0494021 RchiOBHm_Chr4g0384771
rosa_laevigata	RLG00000010273 RLG00000022687
rosa_multiflora	Rmu_sc0001322.1_g000022 Rmu_sc0003412.1_g000004
rosa_roxburghii	Rroxscaffold_5G00332830 Rroxscaffold_6G00391360
rosa_rugosa	Rorug03G0263700 Rorug03G0297500 Rorug03G0297500
rosa_samantha	Rh3AG313300 Rh3BG349400 Rh3CG346200 Rh3DG348700 Rh4AG001100 Rh4BG001000 Rh4CG000900 Rh4DG001000
rosa_wichuraiana	Rw3G027420 Rw4G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	14
AccII	CGCG	1 cut(s)	294
AccIII	TCCGGA	1 cut(s)	916
AciI	CCGC	3 cut(s)	294, 688, 904
AclWI	GGATC	2 cut(s)	1037, 1050
AcsI	RAATTY	1 cut(s)	492
AdeI	CACNNNGTG	3 cut(s)	284, 317, 437
AfaI	GTAC	3 cut(s)	118, 463, 669
AfiI	CCNNNNNNNGG	4 cut(s)	523, 862, 893, 910
AflII	CTTAAG	1 cut(s)	400
AflIII	ACRYGT	1 cut(s)	123
AgsI	TTSAA	5 cut(s)	232, 551, 580, 712, 793
AjnI	CCWGG	3 cut(s)	237, 386, 1058
AleI	CACNNNNGTG	1 cut(s)	1076
AluBI	AGCT	5 cut(s)	328, 409, 451, 731, 839
AluI	AGCT	5 cut(s)	328, 409, 451, 731, 839
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	3 cut(s)	78, 884, 1097
AlwI	GGATC	2 cut(s)	1037, 1050
AlwNI	CAGNNNCTG	1 cut(s)	244
Ama87I	CYCGRG	1 cut(s)	1091
Aor13HI	TCCGGA	1 cut(s)	916
AoxI	GGCC	6 cut(s)	241, 367, 384, 503, 772, 1061
ApeKI	GCWGC	3 cut(s)	189, 612, 953
ApoI	RAATTY	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	2 cut(s)	241, 367
AsuHPI	GGTGA	5 cut(s)	116, 122, 295, 431, 1031
AvaI	CYCGRG	1 cut(s)	1091
BamHI	GGATCC	1 cut(s)	1042
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	771
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	3 cut(s)	201, 599, 965
BccI	CCATC	3 cut(s)	149, 745, 904
BceAI	ACGGC	2 cut(s)	600, 686
BciT130I	CCWGG	3 cut(s)	239, 388, 1060
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	3 cut(s)	78, 884, 1097
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	177
BfrI	CTTAAG	1 cut(s)	400
BisI	GCNGC	4 cut(s)	190, 613, 689, 954
BlsI	GCNGC	4 cut(s)	191, 614, 690, 955
Bme1390I	CCNGG	3 cut(s)	239, 388, 1060
BmeT110I	CYCGRG	1 cut(s)	1091
BmgT120I	GGNCC	2 cut(s)	241, 367
BmiI	GGNNCC	3 cut(s)	16, 915, 1044
BmrFI	CCNGG	3 cut(s)	239, 388, 1060
BmsI	GCATC	5 cut(s)	234, 592, 910, 1025, 1045
Bpu10I	CCTNAGC	1 cut(s)	654
BpuEI	CTTGAG	2 cut(s)	60, 392
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	916
BsaXI	ACNNNNNCTCC	6 cut(s)	150, 180, 465, 495, 530, 560
Bsc4I	CCNNNNNNNGG	4 cut(s)	523, 862, 893, 910
Bse1I	ACTGG	1 cut(s)	31
BseAI	TCCGGA	1 cut(s)	916
BseBI	CCWGG	3 cut(s)	239, 388, 1060
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	6 cut(s)	484, 583, 742, 756, 915, 925
BseLI	CCNNNNNNNGG	4 cut(s)	523, 862, 893, 910
BseMII	CTCAG	3 cut(s)	328, 498, 542
BseNI	ACTGG	1 cut(s)	31
BseXI	GCAGC	3 cut(s)	201, 599, 965
BseYI	CCCAGC	1 cut(s)	1038
BsgI	GTGCAG	3 cut(s)	887, 968, 1119
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	6 cut(s)	243, 369, 386, 505, 774, 1063
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	340
BsiHKCI	CYCGRG	1 cut(s)	1091
BsiSI	CCGG	1 cut(s)	917
BslFI	GGGAC	2 cut(s)	800, 910
BslI	CCNNNNNNNGG	4 cut(s)	523, 862, 893, 910
BsmAI	GTCTC	3 cut(s)	78, 884, 1097
BsmFI	GGGAC	2 cut(s)	800, 910
BsmI	GAATGC	1 cut(s)	1092
BsnI	GGCC	6 cut(s)	243, 369, 386, 505, 774, 1063
BsoBI	CYCGRG	1 cut(s)	1091
Bsp1286I	GDGCHC	2 cut(s)	340, 771
Bsp13I	TCCGGA	1 cut(s)	916
Bsp143I	GATC	4 cut(s)	322, 698, 1042, 1110
BspACI	CCGC	3 cut(s)	294, 688, 904
BspANI	GGCC	6 cut(s)	243, 369, 386, 505, 774, 1063
BspCNI	CTCAG	3 cut(s)	327, 499, 541
BspEI	TCCGGA	1 cut(s)	916
BspFNI	CGCG	1 cut(s)	294
BspHI	TCATGA	1 cut(s)	1113
BspLI	GGNNCC	3 cut(s)	16, 915, 1044
BspPI	GGATC	2 cut(s)	1037, 1050
BspT107I	GGYRCC	1 cut(s)	14
BspTI	CTTAAG	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	4 cut(s)	322, 698, 1042, 1110
Bst2UI	CCWGG	3 cut(s)	239, 388, 1060
Bst4CI	ACNGT	3 cut(s)	546, 1012, 1123
Bst6I	CTCTTC	1 cut(s)	292
BstAFI	CTTAAG	1 cut(s)	400
BstAPI	GCANNNNNTGC	2 cut(s)	437, 959
BstC8I	GCNNGC	5 cut(s)	140, 245, 330, 729, 951
BstDEI	CTNAG	4 cut(s)	314, 507, 528, 654
BstF5I	GGATG	6 cut(s)	484, 583, 742, 756, 915, 925
BstFNI	CGCG	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	4 cut(s)	325, 701, 1045, 1113
BstMAI	GTCTC	3 cut(s)	78, 884, 1097
BstMBI	GATC	4 cut(s)	322, 698, 1042, 1110
BstMWI	GCNNNNNNNGC	4 cut(s)	437, 920, 950, 959
BstNI	CCWGG	3 cut(s)	239, 388, 1060
BstNSI	RCATGY	2 cut(s)	127, 142
BstSCI	CCNGG	3 cut(s)	237, 386, 1058
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	3 cut(s)	201, 599, 965
BstX2I	RGATCY	1 cut(s)	1042
BstXI	CCANNNNNNTGG	1 cut(s)	630
BstYI	RGATCY	1 cut(s)	1042
BsuRI	GGCC	6 cut(s)	243, 369, 386, 505, 774, 1063
BtsCI	GGATG	6 cut(s)	484, 583, 742, 756, 915, 925
BtsI	GCAGTG	1 cut(s)	951
BtsIMutI	CAGTG	4 cut(s)	24, 322, 951, 1071
Cac8I	GCNNGC	5 cut(s)	140, 245, 330, 729, 951
CaiI	CAGNNNCTG	1 cut(s)	244
CciI	TCATGA	1 cut(s)	1113
CfoI	GCGC	1 cut(s)	249
Cfr13I	GGNCC	2 cut(s)	241, 367
CseI	GACGC	2 cut(s)	261, 431
Csp6I	GTAC	3 cut(s)	117, 462, 668
CviAII	CATG	9 cut(s)	98, 124, 139, 172, 308, 415, 764, 1114, 1150
CviQI	GTAC	3 cut(s)	117, 462, 668
DdeI	CTNAG	4 cut(s)	314, 507, 528, 654
DpnI	GATC	4 cut(s)	324, 700, 1044, 1112
DpnII	GATC	4 cut(s)	322, 698, 1042, 1110
DraIII	CACNNNGTG	3 cut(s)	284, 317, 437
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
Eco147I	AGGCCT	2 cut(s)	386, 505
Eco24I	GRGCYC	1 cut(s)	771
Eco88I	CYCGRG	1 cut(s)	1091
EcoO109I	RGGNCCY	2 cut(s)	241, 367
EcoRII	CCWGG	3 cut(s)	237, 386, 1058
EcoT38I	GRGCYC	1 cut(s)	771
FaeI	CATG	9 cut(s)	101, 127, 142, 175, 311, 418, 767, 1117, 1153
FaqI	GGGAC	2 cut(s)	800, 910
FatI	CATG	9 cut(s)	97, 123, 138, 171, 307, 414, 763, 1113, 1149
FauNDI	CATATG	1 cut(s)	757
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	4 cut(s)	190, 613, 689, 954
FokI	GGATG	6 cut(s)	491, 570, 749, 763, 922, 932
FriOI	GRGCYC	1 cut(s)	771
Fsp4HI	GCNGC	4 cut(s)	190, 613, 689, 954
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	4 cut(s)	190, 613, 689, 954
GsaI	CCCAGC	1 cut(s)	1042
HaeIII	GGCC	6 cut(s)	243, 369, 386, 505, 774, 1063
HapII	CCGG	1 cut(s)	917
HgaI	GACGC	2 cut(s)	261, 431
HhaI	GCGC	1 cut(s)	249
Hin1II	CATG	9 cut(s)	101, 127, 142, 175, 311, 418, 767, 1117, 1153
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	729
HinfI	GANTC	4 cut(s)	30, 212, 300, 778
HpaII	CCGG	1 cut(s)	917
HphI	GGTGA	5 cut(s)	116, 122, 295, 431, 1031
Hpy166II	GTNNAC	2 cut(s)	24, 620
Hpy188I	TCNGA	4 cut(s)	531, 799, 820, 1128
Hpy188III	TCNNGA	7 cut(s)	229, 562, 679, 917, 931, 1093, 1114
Hpy8I	GTNNAC	2 cut(s)	24, 620
Hpy99I	CGWCG	1 cut(s)	255
HpyAV	CCTTC	4 cut(s)	869, 937, 1078, 1123
HpyCH4III	ACNGT	3 cut(s)	546, 1012, 1123
HpyCH4IV	ACGT	1 cut(s)	575
HpyF10VI	GCNNNNNNNGC	4 cut(s)	437, 920, 950, 959
HpyF3I	CTNAG	4 cut(s)	314, 507, 528, 654
HpySE526I	ACGT	1 cut(s)	575
Hsp92II	CATG	9 cut(s)	101, 127, 142, 175, 311, 418, 767, 1117, 1153
HspAI	GCGC	1 cut(s)	247
Kpn2I	TCCGGA	1 cut(s)	916
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	322, 698, 1042, 1110
LmnI	GCTCC	2 cut(s)	538, 919
Lsp1109I	GCAGC	3 cut(s)	201, 599, 965
LweI	GCATC	5 cut(s)	234, 592, 910, 1025, 1045
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	4 cut(s)	301, 358, 419, 640
MalI	GATC	4 cut(s)	324, 700, 1044, 1112
MboI	GATC	4 cut(s)	322, 698, 1042, 1110
MboII	GAAGA	1 cut(s)	309
MfeI	CAATTG	1 cut(s)	393
MflI	RGATCY	1 cut(s)	1042
MhlI	GDGCHC	2 cut(s)	340, 771
MluCI	AATT	6 cut(s)	352, 376, 393, 492, 674, 828
MlyI	GAGTC	1 cut(s)	309
MroI	TCCGGA	1 cut(s)	916
MseI	TTAA	4 cut(s)	288, 401, 831, 1007
MslI	CAYNNNNRTG	2 cut(s)	102, 1076
MspA1I	CMGCKG	1 cut(s)	906
MspCI	CTTAAG	1 cut(s)	400
MspI	CCGG	1 cut(s)	917
MspR9I	CCNGG	3 cut(s)	239, 388, 1060
MunI	CAATTG	1 cut(s)	393
Mva1269I	GAATGC	1 cut(s)	1092
MvaI	CCWGG	3 cut(s)	239, 388, 1060
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	4 cut(s)	437, 920, 950, 959
NdeI	CATATG	1 cut(s)	757
NdeII	GATC	4 cut(s)	322, 698, 1042, 1110
NlaIII	CATG	9 cut(s)	101, 127, 142, 175, 311, 418, 767, 1117, 1153
NlaIV	GGNNCC	3 cut(s)	16, 915, 1044
NmeAIII	GCCGAG	1 cut(s)	750
NmuCI	GTSAC	3 cut(s)	301, 358, 419
NspI	RCATGY	2 cut(s)	127, 142
OliI	CACNNNNGTG	1 cut(s)	1076
PaeI	GCATGC	1 cut(s)	142
PaeR7I	CTCGAG	1 cut(s)	1091
PagI	TCATGA	1 cut(s)	1113
PceI	AGGCCT	2 cut(s)	386, 505
PciI	ACATGT	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	1132
PctI	GAATGC	1 cut(s)	1092
PfeI	GAWTC	3 cut(s)	30, 212, 778
PkrI	GCNGC	4 cut(s)	191, 614, 690, 955
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
PscI	ACATGT	1 cut(s)	123
Psp6I	CCWGG	3 cut(s)	237, 386, 1058
PspFI	CCCAGC	1 cut(s)	1038
PspGI	CCWGG	3 cut(s)	237, 386, 1058
PspN4I	GGNNCC	3 cut(s)	16, 915, 1044
PspPI	GGNCC	2 cut(s)	241, 367
PstNI	CAGNNNCTG	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	1042
RsaI	GTAC	3 cut(s)	118, 463, 669
RsaNI	GTAC	3 cut(s)	117, 462, 668
RseI	CAYNNNNRTG	2 cut(s)	102, 1076
SaqAI	TTAA	4 cut(s)	288, 401, 831, 1007
SatI	GCNGC	4 cut(s)	190, 613, 689, 954
Sau3AI	GATC	4 cut(s)	322, 698, 1042, 1110
Sau96I	GGNCC	2 cut(s)	241, 367
SchI	GAGTC	1 cut(s)	309
ScrFI	CCNGG	3 cut(s)	239, 388, 1060
SduI	GDGCHC	2 cut(s)	340, 771
SfaNI	GCATC	5 cut(s)	234, 592, 910, 1025, 1045
SfcI	CTRYAG	1 cut(s)	177
Sfr274I	CTCGAG	1 cut(s)	1091
SlaI	CTCGAG	1 cut(s)	1091
SmiMI	CAYNNNNRTG	2 cut(s)	102, 1076
SmlI	CTYRAG	4 cut(s)	75, 371, 400, 1091
SmoI	CTYRAG	4 cut(s)	75, 371, 400, 1091
SphI	GCATGC	1 cut(s)	142
Sse9I	AATT	6 cut(s)	352, 376, 393, 492, 674, 828
SseBI	AGGCCT	2 cut(s)	386, 505
SsiI	CCGC	3 cut(s)	294, 688, 904
SspMI	CTAG	1 cut(s)	147
StuI	AGGCCT	2 cut(s)	386, 505
StyD4I	CCNGG	3 cut(s)	237, 386, 1058
TaaI	ACNGT	3 cut(s)	546, 1012, 1123
TaiI	ACGT	1 cut(s)	578
TaqI	TCGA	2 cut(s)	932, 1092
TasI	AATT	6 cut(s)	352, 376, 393, 492, 674, 828
TauI	GCSGC	1 cut(s)	691
TfiI	GAWTC	3 cut(s)	30, 212, 778
Tru1I	TTAA	4 cut(s)	288, 401, 831, 1007
Tru9I	TTAA	4 cut(s)	288, 401, 831, 1007
TscAI	CASTG	4 cut(s)	31, 322, 951, 1078
TseFI	GTSAC	3 cut(s)	301, 358, 419
TseI	GCWGC	3 cut(s)	189, 612, 953
Tsp45I	GTSAC	3 cut(s)	301, 358, 419
TspDTI	ATGAA	1 cut(s)	752
TspGWI	ACGGA	6 cut(s)	346, 377, 486, 696, 887, 971
TspRI	CASTG	4 cut(s)	31, 322, 951, 1078
Vha464I	CTTAAG	1 cut(s)	400
XapI	RAATTY	1 cut(s)	492
XceI	RCATGY	2 cut(s)	127, 142
XhoI	CTCGAG	1 cut(s)	1091
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.