Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002019

Physical Location & Seq

Genomic Coordinates Reverse (-)

41547637 .. 41553969

Gene Structure 6333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45664

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGTTGGAAGGTGGTGCCAAGTTCACTGGAATTATAGGTCTAAACAACAACGATTATGATTTGTCTCAAGGCTTTTACCACAAACTTCATGAGGGTGAGGGTACTAACATGTCCACTGACAGTATGCAAACTAGCGTTGATGGAGGCTCTGTCGCCATGTCTATAGATAACAGCAGCGTTGCTTCAAATACCAATGATTCCCACACTCGCATCTTGAAGCACCAAGGCCTGCGGCGACGCAGAAATGACAACGACTCTGTTGCTGCACAAAGTGTTAATCGCGGAAGAGTCACACATGCACTCAGTGATGATCAACTTGCCCGAGCTCTAATGGACAGCAATTCTGTCACAGAGGGGCTTGAGAATTATGAGGCATGGACAATTGACTTAAGAAAGCTAAACATGGGTGAAGCTTTTGCGCAAGGTGCTTTTGGGAAGCTATATAGAGGTACTTACAATGGCGAGGATGTTGCTATCAAAATTTTGGAGAGGCCTGAGAATGACCCAGAAAAGGCTCAGATAATGGAGCAACAGTTTCAACAGGAAGTCAAGATGTTGGCTACGTTGAAGCATCCGAACATAGTTCGTTTTATCGGTGGCTGCCGTAAACCAATGGTTTGGTGCATTGTAACAGAATATGCTAAGGGTGGTTCAGTACGGCAATTCTTGATCAAGAGGCAGAGCCGATCAGTTCCGTTGAAGTTAGCAGTCAAGCAAGCTTTGGATGTTGCAAGGGGGATGGCATATGTTCATGGGCTCGGGCTGATTCACAGGGACTTGAAATCGGACAACCTTTTGATTTTTTCAGACAAATCAATTAAAATTGCTGATTTTGGGGTTGCCCGTATTGAGGTGCAGACGGAAGGAATGACCCCAGAGACTGGGACATACCGCTGGATGGCTCCGGAGATGATCCAGCATAGGCCATACACTCAGAAAGTTGATGTTTATAGCTTTGGGATTGTTCTTTGGGAACTTATCACAGGGATGCTTCCGTTCTCGAACATGACAGCAGTGCAGGCAGCGTTTGCAGTTGTCAATAAGGGTGTCCGTCCTATCATTCCCCCTGACTGCTTAACTGTTCTTGGTGAGATAATGACGAGGTGCTGGGATGCCAACCCTGATGCCAGACCACCCTTCACTGAGGTGGTAAGAATGCTCGAGATTGCAGAGACAGAGATCATGACCACTGTCCGGAAGGCTCGTTTCAGGTGTTGCATCACCCAACCAATGACAGCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

414

Amino Acids

46.25

Weight (kDa)

7.12

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	134 - 387	2.7e-65	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	140 - 385	6.8e-53	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24360 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170
fragaria_vesca	FvH4_4g00150 FvH4_4g00150 FvH4_4g00150 FvH4_4g00150
malus_domestica	MD00G1091600.v1.1 MD04G1001200.v1.1 MD04G1001300.v1.1 MD13G1286000.v1.1
prunus_persica	Prupe.1G001200_v2.0.a1 Prupe.1G001300_v2.0.a1
pyrus_communis	pycom04g00180 pycom04g00190 pycom420g00210
rosa_chinensis	RchiOBHm_Chr3g0494021 RchiOBHm_Chr4g0384771
rosa_laevigata	RLG00000010273 RLG00000022687
rosa_multiflora	Rmu_sc0001322.1_g000022 Rmu_sc0003412.1_g000004
rosa_roxburghii	Rroxscaffold_5G00332830 Rroxscaffold_6G00391360
rosa_rugosa	Rorug03G0263700 Rorug03G0297500 Rorug03G0297500
rosa_samantha	Rh3AG313300 Rh3BG349400 Rh3CG346200 Rh3DG348700 Rh4AG001100 Rh4BG001000 Rh4CG000900 Rh4DG001000
rosa_wichuraiana	Rw3G027420 Rw4G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	420
AccB1I	GGYRCC	1 cut(s)	14
AccB7I	CCANNNNNTGG	1 cut(s)	881
AccII	CGCG	1 cut(s)	282
AccIII	TCCGGA	2 cut(s)	904, 1194
AciI	CCGC	3 cut(s)	232, 282, 892
AclWI	GGATC	1 cut(s)	907
AcsI	RAATTY	1 cut(s)	480
AdeI	CACNNNGTG	2 cut(s)	272, 305
AfaI	GTAC	3 cut(s)	103, 451, 657
AfiI	CCNNNNNNNGG	5 cut(s)	511, 850, 881, 898, 1194
AflII	CTTAAG	1 cut(s)	388
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	6 cut(s)	186, 217, 539, 568, 700, 781
AleI	CACNNNNGTG	1 cut(s)	1145
AluBI	AGCT	7 cut(s)	326, 397, 413, 439, 719, 954, 1238
AluI	AGCT	7 cut(s)	326, 397, 413, 439, 719, 954, 1238
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	3 cut(s)	69, 872, 1166
AlwI	GGATC	1 cut(s)	907
AlwNI	CAGNNNCTG	1 cut(s)	881
Ama87I	CYCGRG	3 cut(s)	321, 758, 1160
Aor13HI	TCCGGA	2 cut(s)	904, 1194
AoxI	GGCC	3 cut(s)	226, 491, 923
ApeKI	GCWGC	4 cut(s)	174, 263, 600, 1022
ApoI	RAATTY	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	421
AsuHPI	GGTGA	4 cut(s)	107, 419, 1100, 1213
AvaI	CYCGRG	3 cut(s)	321, 758, 1160
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	2 cut(s)	328, 759
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	4 cut(s)	186, 250, 587, 1034
BccI	CCATC	3 cut(s)	134, 733, 892
BceAI	ACGGC	2 cut(s)	588, 674
BcgI	CGANNNNNNTGC	4 cut(s)	242, 276, 452, 486
BclI	TGATCA	2 cut(s)	310, 669
BcoDI	GTCTC	3 cut(s)	69, 872, 1166
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	388
BisI	GCNGC	5 cut(s)	175, 233, 264, 601, 1023
BlsI	GCNGC	5 cut(s)	176, 234, 265, 602, 1024
BmeT110I	CYCGRG	3 cut(s)	321, 758, 1160
BmiI	GGNNCC	2 cut(s)	16, 903
BmrI	ACTGGG	1 cut(s)	891
BmsI	GCATC	6 cut(s)	219, 580, 978, 1102, 1114, 1227
BmuI	ACTGGG	1 cut(s)	891
BoxI	GACNNNNGTC	1 cut(s)	1190
Bpu10I	CCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	2 cut(s)	51, 380
BsaJI	CCNNGG	1 cut(s)	223
BsaWI	WCCGGW	2 cut(s)	904, 1194
BsaXI	ACNNNNNCTCC	4 cut(s)	135, 165, 518, 548
Bsc4I	CCNNNNNNNGG	5 cut(s)	511, 850, 881, 898, 1194
Bse1I	ACTGG	2 cut(s)	31, 886
BseAI	TCCGGA	2 cut(s)	904, 1194
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	7 cut(s)	472, 571, 730, 744, 903, 993, 1117
BseLI	CCNNNNNNNGG	5 cut(s)	511, 850, 881, 898, 1194
BseMII	CTCAG	5 cut(s)	316, 486, 530, 947, 1134
BseNI	ACTGG	2 cut(s)	31, 886
BseXI	GCAGC	4 cut(s)	186, 250, 587, 1034
BseYI	CCCAGC	1 cut(s)	1107
BsgI	GTGCAG	3 cut(s)	249, 875, 1037
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	228, 493, 925
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	328
BsiHKCI	CYCGRG	3 cut(s)	321, 758, 1160
BsiSI	CCGG	2 cut(s)	905, 1195
BslFI	GGGAC	2 cut(s)	788, 898
BslI	CCNNNNNNNGG	5 cut(s)	511, 850, 881, 898, 1194
BsmAI	GTCTC	3 cut(s)	69, 872, 1166
BsmFI	GGGAC	2 cut(s)	788, 898
BsmI	GAATGC	1 cut(s)	1161
BsnI	GGCC	3 cut(s)	228, 493, 925
BsoBI	CYCGRG	3 cut(s)	321, 758, 1160
Bsp1286I	GDGCHC	2 cut(s)	328, 759
Bsp13I	TCCGGA	2 cut(s)	904, 1194
Bsp143I	GATC	5 cut(s)	310, 669, 686, 912, 1179
BspACI	CCGC	3 cut(s)	232, 282, 892
BspANI	GGCC	3 cut(s)	228, 493, 925
BspCNI	CTCAG	5 cut(s)	315, 487, 529, 946, 1135
BspEI	TCCGGA	2 cut(s)	904, 1194
BspFNI	CGCG	1 cut(s)	282
BspHI	TCATGA	2 cut(s)	88, 1182
BspLI	GGNNCC	2 cut(s)	16, 903
BspPI	GGATC	1 cut(s)	907
BspT107I	GGYRCC	1 cut(s)	14
BspTI	CTTAAG	1 cut(s)	388
BsrI	ACTGG	2 cut(s)	31, 886
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	5 cut(s)	310, 669, 686, 912, 1179
BssT1I	CCWWGG	1 cut(s)	223
Bst4CI	ACNGT	4 cut(s)	122, 534, 1081, 1192
Bst6I	CTCTTC	1 cut(s)	280
BstAFI	CTTAAG	1 cut(s)	388
BstAPI	GCANNNNNTGC	1 cut(s)	1028
BstC8I	GCNNGC	3 cut(s)	230, 717, 1020
BstDEI	CTNAG	6 cut(s)	302, 495, 516, 642, 933, 1143
BstF5I	GGATG	7 cut(s)	472, 571, 730, 744, 903, 993, 1117
BstFNI	CGCG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	5 cut(s)	313, 672, 689, 915, 1182
BstMAI	GTCTC	3 cut(s)	69, 872, 1166
BstMBI	GATC	5 cut(s)	310, 669, 686, 912, 1179
BstMWI	GCNNNNNNNGC	3 cut(s)	425, 1019, 1028
BstNSI	RCATGY	2 cut(s)	112, 299
BstPAI	GACNNNNGTC	1 cut(s)	1190
BstSFI	CTRYAG	1 cut(s)	162
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	4 cut(s)	186, 250, 587, 1034
BstXI	CCANNNNNNTGG	1 cut(s)	618
BsuRI	GGCC	3 cut(s)	228, 493, 925
BtsCI	GGATG	7 cut(s)	472, 571, 730, 744, 903, 993, 1117
BtsI	GCAGTG	1 cut(s)	1020
BtsIMutI	CAGTG	6 cut(s)	24, 114, 310, 1020, 1140, 1188
Cac8I	GCNNGC	3 cut(s)	230, 717, 1020
CaiI	CAGNNNCTG	1 cut(s)	881
CciI	TCATGA	2 cut(s)	88, 1182
CfoI	GCGC	1 cut(s)	421
CseI	GACGC	1 cut(s)	246
Csp6I	GTAC	3 cut(s)	102, 450, 656
CviAII	CATG	9 cut(s)	89, 109, 157, 296, 375, 403, 752, 1006, 1183
CviQI	GTAC	3 cut(s)	102, 450, 656
DdeI	CTNAG	6 cut(s)	302, 495, 516, 642, 933, 1143
DpnI	GATC	5 cut(s)	312, 671, 688, 914, 1181
DpnII	GATC	5 cut(s)	310, 669, 686, 912, 1179
DraIII	CACNNNGTG	2 cut(s)	272, 305
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Ecl136II	GAGCTC	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	223
Eco147I	AGGCCT	2 cut(s)	228, 493
Eco24I	GRGCYC	2 cut(s)	328, 759
Eco53kI	GAGCTC	1 cut(s)	326
Eco88I	CYCGRG	3 cut(s)	321, 758, 1160
EcoICRI	GAGCTC	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	223
EcoT38I	GRGCYC	2 cut(s)	328, 759
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	9 cut(s)	92, 112, 160, 299, 378, 406, 755, 1009, 1186
FaqI	GGGAC	2 cut(s)	788, 898
FatI	CATG	9 cut(s)	88, 108, 156, 295, 374, 402, 751, 1005, 1182
FauNDI	CATATG	1 cut(s)	745
FbaI	TGATCA	2 cut(s)	310, 669
Fnu4HI	GCNGC	5 cut(s)	175, 233, 264, 601, 1023
FokI	GGATG	7 cut(s)	479, 558, 737, 751, 910, 1000, 1124
FriOI	GRGCYC	2 cut(s)	328, 759
Fsp4HI	GCNGC	5 cut(s)	175, 233, 264, 601, 1023
FspBI	CTAG	1 cut(s)	132
FspI	TGCGCA	1 cut(s)	420
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	5 cut(s)	175, 233, 264, 601, 1023
GsaI	CCCAGC	1 cut(s)	1111
HaeIII	GGCC	3 cut(s)	228, 493, 925
HapII	CCGG	2 cut(s)	905, 1195
HgaI	GACGC	1 cut(s)	246
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	9 cut(s)	92, 112, 160, 299, 378, 406, 755, 1009, 1186
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HindIII	AAGCTT	2 cut(s)	411, 717
HinfI	GANTC	4 cut(s)	197, 254, 288, 766
HpaII	CCGG	2 cut(s)	905, 1195
HphI	GGTGA	4 cut(s)	107, 419, 1100, 1213
Hpy166II	GTNNAC	3 cut(s)	24, 114, 608
Hpy188I	TCNGA	5 cut(s)	519, 576, 787, 808, 936
Hpy8I	GTNNAC	3 cut(s)	24, 114, 608
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	3 cut(s)	857, 1147, 1192
HpyCH4III	ACNGT	4 cut(s)	122, 534, 1081, 1192
HpyCH4IV	ACGT	1 cut(s)	563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	425, 1019, 1028
HpyF3I	CTNAG	6 cut(s)	302, 495, 516, 642, 933, 1143
HpySE526I	ACGT	1 cut(s)	563
Hsp92II	CATG	9 cut(s)	92, 112, 160, 299, 378, 406, 755, 1009, 1186
HspAI	GCGC	1 cut(s)	419
Kpn2I	TCCGGA	2 cut(s)	904, 1194
Ksp22I	TGATCA	2 cut(s)	310, 669
Kzo9I	GATC	5 cut(s)	310, 669, 686, 912, 1179
LmnI	GCTCC	2 cut(s)	526, 907
Lsp1109I	GCAGC	4 cut(s)	186, 250, 587, 1034
LweI	GCATC	6 cut(s)	219, 580, 978, 1102, 1114, 1227
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	563
MaeIII	GTNAC	3 cut(s)	289, 346, 628
MalI	GATC	5 cut(s)	312, 671, 688, 914, 1181
MboI	GATC	5 cut(s)	310, 669, 686, 912, 1179
MboII	GAAGA	1 cut(s)	297
MfeI	CAATTG	1 cut(s)	381
MhlI	GDGCHC	2 cut(s)	328, 759
MluCI	AATT	8 cut(s)	30, 340, 364, 381, 480, 662, 816, 822
MlyI	GAGTC	2 cut(s)	248, 297
MroI	TCCGGA	2 cut(s)	904, 1194
MseI	TTAA	4 cut(s)	276, 389, 819, 1076
MslI	CAYNNNNRTG	3 cut(s)	93, 986, 1145
MspA1I	CMGCKG	2 cut(s)	894, 1238
MspCI	CTTAAG	1 cut(s)	388
MspI	CCGG	2 cut(s)	905, 1195
MunI	CAATTG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	1161
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	3 cut(s)	425, 1019, 1028
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	5 cut(s)	310, 669, 686, 912, 1179
NlaIII	CATG	9 cut(s)	92, 112, 160, 299, 378, 406, 755, 1009, 1186
NlaIV	GGNNCC	2 cut(s)	16, 903
NmuCI	GTSAC	2 cut(s)	289, 346
NsbI	TGCGCA	1 cut(s)	420
NspI	RCATGY	2 cut(s)	112, 299
OliI	CACNNNNGTG	1 cut(s)	1145
PaeR7I	CTCGAG	1 cut(s)	1160
PagI	TCATGA	2 cut(s)	88, 1182
PceI	AGGCCT	2 cut(s)	228, 493
PciI	ACATGT	1 cut(s)	108
PctI	GAATGC	1 cut(s)	1161
PfeI	GAWTC	2 cut(s)	197, 766
PflMI	CCANNNNNTGG	1 cut(s)	881
PkrI	GCNGC	5 cut(s)	176, 234, 265, 602, 1024
PleI	GAGTC	2 cut(s)	248, 296
PpsI	GAGTC	2 cut(s)	248, 296
PscI	ACATGT	1 cut(s)	108
PshAI	GACNNNNGTC	1 cut(s)	1190
Psp124BI	GAGCTC	1 cut(s)	328
PspFI	CCCAGC	1 cut(s)	1107
PspN4I	GGNNCC	2 cut(s)	16, 903
PstNI	CAGNNNCTG	1 cut(s)	881
PvuII	CAGCTG	1 cut(s)	1238
RsaI	GTAC	3 cut(s)	103, 451, 657
RsaNI	GTAC	3 cut(s)	102, 450, 656
RseI	CAYNNNNRTG	3 cut(s)	93, 986, 1145
SacI	GAGCTC	1 cut(s)	328
SaqAI	TTAA	4 cut(s)	276, 389, 819, 1076
SatI	GCNGC	5 cut(s)	175, 233, 264, 601, 1023
Sau3AI	GATC	5 cut(s)	310, 669, 686, 912, 1179
SchI	GAGTC	2 cut(s)	248, 297
SduI	GDGCHC	2 cut(s)	328, 759
SfaNI	GCATC	6 cut(s)	219, 580, 978, 1102, 1114, 1227
SfcI	CTRYAG	1 cut(s)	162
Sfr274I	CTCGAG	1 cut(s)	1160
SlaI	CTCGAG	1 cut(s)	1160
SmiMI	CAYNNNNRTG	3 cut(s)	93, 986, 1145
SmlI	CTYRAG	4 cut(s)	66, 359, 388, 1160
SmoI	CTYRAG	4 cut(s)	66, 359, 388, 1160
Sse9I	AATT	8 cut(s)	30, 340, 364, 381, 480, 662, 816, 822
SseBI	AGGCCT	2 cut(s)	228, 493
SsiI	CCGC	3 cut(s)	232, 282, 892
SspMI	CTAG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	328
StuI	AGGCCT	2 cut(s)	228, 493
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	4 cut(s)	122, 534, 1081, 1192
TaiI	ACGT	1 cut(s)	566
TaqI	TCGA	2 cut(s)	1001, 1161
TasI	AATT	8 cut(s)	30, 340, 364, 381, 480, 662, 816, 822
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	2 cut(s)	197, 766
Tru1I	TTAA	4 cut(s)	276, 389, 819, 1076
Tru9I	TTAA	4 cut(s)	276, 389, 819, 1076
TscAI	CASTG	6 cut(s)	31, 121, 310, 1020, 1147, 1195
TseFI	GTSAC	2 cut(s)	289, 346
TseI	GCWGC	4 cut(s)	174, 263, 600, 1022
Tsp45I	GTSAC	2 cut(s)	289, 346
TspDTI	ATGAA	2 cut(s)	77, 740
TspGWI	ACGGA	4 cut(s)	684, 875, 984, 1040
TspRI	CASTG	6 cut(s)	31, 121, 310, 1020, 1147, 1195
Van91I	CCANNNNNTGG	1 cut(s)	881
Vha464I	CTTAAG	1 cut(s)	388
XapI	RAATTY	1 cut(s)	480
XceI	RCATGY	2 cut(s)	112, 299
XhoI	CTCGAG	1 cut(s)	1160
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.