Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002019

Physical Location & Seq

Genomic Coordinates Reverse (-)

39753839 .. 39760474

Gene Structure 6636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG348700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTTGGAAGGTGGTGCCAAGTTCCCTGGAATTATAGGTCTAAACAACAACGATTATGATTTGTCTCAAGGCTTTTACCACAAACTTCATGAGGGTGAGGGTACTAACATGTCCACTGACAGTATGCAAACTAGCGTTGATGGAGGCTCTGTCGCCATGTCTATAGGTAACAGCAGCGTTGCTTCAAATACCAATGATTCCCACACTCGCATCTTGAACCACCAAGGCCTGCGGCGACGCAGAAATGACAACGACTCTGTTGCTGCACAAAGTGTTCATCGCGGAAGAGTCACACATGCACTCAGTGATGATCAACTTGCCCGAGCTCTAATGGACAGCAATTCTGTCACAGAGGGGCTTGAGAATTATGAGGCATGGACAATTGACTTAAGAAAGCTAAACATGGGTGAAGCTTTTGCGCAAGGTGCTTTTGGGAAGCTATATAGAGGTACTTACAATGGCGAGGATGTTGCTATCAAAATTTTGGAGAGGCCTGAGAATGACCCAGAAAAGGCTCAGATAATGGAGCAACAGTTTCAACAGGAAGTCAAGATGTTGGCTACGTTGAAGCATCCGAACATAGTTCGTTTTATCGGTGGCTGCCGTAAACCAATGGTTTGGTGCATTGTAACAGAATATGCTAAGGGTGGTTCAGTACGGCAATTCTTGATCAAGAGGCAGAGCCGATCAGTTCCGTTGAAGTTAGCAGTCAAGCAAGCTTTGGATGTTGCAAGGGGGATGGCATATGTTCATGGGCTCGGGCTGATTCACAGGGACTTGAAATCGGACAACCTTTTGATTTTTTCAGACAAATCAATTAAAATTGCTGATTTTGGGGTTGCCCGTATTGAGGTGCAGACGGAAGGAATGACCCCAGAGACTGGGACATACCGCTGGATGGCTCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

302

Amino Acids

33.51

Weight (kDa)

7.81

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	134 - 302	6.6e-37	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	140 - 302	5.8e-36	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24360 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170
fragaria_vesca	FvH4_4g00150 FvH4_4g00150 FvH4_4g00150 FvH4_4g00150
malus_domestica	MD00G1091600.v1.1 MD04G1001200.v1.1 MD04G1001300.v1.1 MD13G1286000.v1.1
prunus_persica	Prupe.1G001200_v2.0.a1 Prupe.1G001300_v2.0.a1
pyrus_communis	pycom04g00180 pycom04g00190 pycom420g00210
rosa_chinensis	RchiOBHm_Chr3g0494021 RchiOBHm_Chr4g0384771
rosa_laevigata	RLG00000010273 RLG00000022687
rosa_multiflora	Rmu_sc0001322.1_g000022 Rmu_sc0003412.1_g000004
rosa_roxburghii	Rroxscaffold_5G00332830 Rroxscaffold_6G00391360
rosa_rugosa	Rorug03G0263700 Rorug03G0297500 Rorug03G0297500
rosa_samantha	Rh3AG313300 Rh3BG349400 Rh3CG346200 Rh3DG348700 Rh4AG001100 Rh4BG001000 Rh4CG000900 Rh4DG001000
rosa_wichuraiana	Rw3G027420 Rw4G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	420
AccB1I	GGYRCC	1 cut(s)	14
AccB7I	CCANNNNNTGG	1 cut(s)	881
AccII	CGCG	1 cut(s)	282
AciI	CCGC	3 cut(s)	232, 282, 892
AcsI	RAATTY	1 cut(s)	480
AdeI	CACNNNGTG	2 cut(s)	272, 305
AfaI	GTAC	3 cut(s)	103, 451, 657
AfiI	CCNNNNNNNGG	4 cut(s)	511, 850, 881, 898
AflII	CTTAAG	1 cut(s)	388
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	6 cut(s)	186, 217, 539, 568, 700, 781
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	5 cut(s)	326, 397, 413, 439, 719
AluI	AGCT	5 cut(s)	326, 397, 413, 439, 719
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	2 cut(s)	69, 872
AlwNI	CAGNNNCTG	1 cut(s)	881
Ama87I	CYCGRG	2 cut(s)	321, 758
AoxI	GGCC	2 cut(s)	226, 491
ApeKI	GCWGC	3 cut(s)	174, 263, 600
ApoI	RAATTY	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	421
AsuHPI	GGTGA	2 cut(s)	107, 419
AvaI	CYCGRG	2 cut(s)	321, 758
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	2 cut(s)	328, 759
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	3 cut(s)	186, 250, 587
BccI	CCATC	3 cut(s)	134, 733, 892
BceAI	ACGGC	2 cut(s)	588, 674
BcgI	CGANNNNNNTGC	4 cut(s)	242, 276, 452, 486
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	2 cut(s)	310, 669
BcoDI	GTCTC	2 cut(s)	69, 872
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	388
BisI	GCNGC	4 cut(s)	175, 233, 264, 601
BlsI	GCNGC	4 cut(s)	176, 234, 265, 602
Bme1390I	CCNGG	1 cut(s)	27
BmeT110I	CYCGRG	2 cut(s)	321, 758
BmiI	GGNNCC	2 cut(s)	16, 903
BmrFI	CCNGG	1 cut(s)	27
BmrI	ACTGGG	1 cut(s)	891
BmsI	GCATC	2 cut(s)	219, 580
BmuI	ACTGGG	1 cut(s)	891
Bpu10I	CCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	2 cut(s)	51, 380
BsaJI	CCNNGG	2 cut(s)	25, 223
BsaXI	ACNNNNNCTCC	4 cut(s)	135, 165, 518, 548
Bsc4I	CCNNNNNNNGG	4 cut(s)	511, 850, 881, 898
Bse1I	ACTGG	1 cut(s)	886
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	25, 223
BseGI	GGATG	5 cut(s)	472, 571, 730, 744, 903
BseLI	CCNNNNNNNGG	4 cut(s)	511, 850, 881, 898
BseMII	CTCAG	3 cut(s)	316, 486, 530
BseNI	ACTGG	1 cut(s)	886
BseXI	GCAGC	3 cut(s)	186, 250, 587
BsgI	GTGCAG	2 cut(s)	249, 875
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	228, 493
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	328
BsiHKCI	CYCGRG	2 cut(s)	321, 758
BslFI	GGGAC	2 cut(s)	788, 898
BslI	CCNNNNNNNGG	4 cut(s)	511, 850, 881, 898
BsmAI	GTCTC	2 cut(s)	69, 872
BsmFI	GGGAC	2 cut(s)	788, 898
BsnI	GGCC	2 cut(s)	228, 493
BsoBI	CYCGRG	2 cut(s)	321, 758
Bsp1286I	GDGCHC	2 cut(s)	328, 759
Bsp143I	GATC	3 cut(s)	310, 669, 686
BspACI	CCGC	3 cut(s)	232, 282, 892
BspANI	GGCC	2 cut(s)	228, 493
BspCNI	CTCAG	3 cut(s)	315, 487, 529
BspFNI	CGCG	1 cut(s)	282
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	16, 903
BspT107I	GGYRCC	1 cut(s)	14
BspTI	CTTAAG	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	886
BssECI	CCNNGG	2 cut(s)	25, 223
BssMI	GATC	3 cut(s)	310, 669, 686
BssT1I	CCWWGG	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	122, 534
Bst6I	CTCTTC	1 cut(s)	280
BstAFI	CTTAAG	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	230, 717
BstDEI	CTNAG	4 cut(s)	302, 495, 516, 642
BstF5I	GGATG	5 cut(s)	472, 571, 730, 744, 903
BstFNI	CGCG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	3 cut(s)	313, 672, 689
BstMAI	GTCTC	2 cut(s)	69, 872
BstMBI	GATC	3 cut(s)	310, 669, 686
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	2 cut(s)	112, 299
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	162
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	186, 250, 587
BstXI	CCANNNNNNTGG	1 cut(s)	618
BsuRI	GGCC	2 cut(s)	228, 493
BtgZI	GCGATG	1 cut(s)	263
BtsCI	GGATG	5 cut(s)	472, 571, 730, 744, 903
BtsIMutI	CAGTG	2 cut(s)	114, 310
Cac8I	GCNNGC	2 cut(s)	230, 717
CaiI	CAGNNNCTG	1 cut(s)	881
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	1 cut(s)	421
CseI	GACGC	1 cut(s)	246
Csp6I	GTAC	3 cut(s)	102, 450, 656
CviAII	CATG	7 cut(s)	89, 109, 157, 296, 375, 403, 752
CviQI	GTAC	3 cut(s)	102, 450, 656
DdeI	CTNAG	4 cut(s)	302, 495, 516, 642
DpnI	GATC	3 cut(s)	312, 671, 688
DpnII	GATC	3 cut(s)	310, 669, 686
DraIII	CACNNNGTG	2 cut(s)	272, 305
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Ecl136II	GAGCTC	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	223
Eco147I	AGGCCT	2 cut(s)	228, 493
Eco24I	GRGCYC	2 cut(s)	328, 759
Eco53kI	GAGCTC	1 cut(s)	326
Eco88I	CYCGRG	2 cut(s)	321, 758
EcoICRI	GAGCTC	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	223
EcoT38I	GRGCYC	2 cut(s)	328, 759
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	7 cut(s)	92, 112, 160, 299, 378, 406, 755
FaqI	GGGAC	2 cut(s)	788, 898
FatI	CATG	7 cut(s)	88, 108, 156, 295, 374, 402, 751
FauNDI	CATATG	1 cut(s)	745
FbaI	TGATCA	2 cut(s)	310, 669
Fnu4HI	GCNGC	4 cut(s)	175, 233, 264, 601
FokI	GGATG	4 cut(s)	479, 558, 737, 751
FriOI	GRGCYC	2 cut(s)	328, 759
Fsp4HI	GCNGC	4 cut(s)	175, 233, 264, 601
FspBI	CTAG	1 cut(s)	132
FspI	TGCGCA	1 cut(s)	420
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	4 cut(s)	175, 233, 264, 601
HaeIII	GGCC	2 cut(s)	228, 493
HgaI	GACGC	1 cut(s)	246
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	7 cut(s)	92, 112, 160, 299, 378, 406, 755
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HindIII	AAGCTT	2 cut(s)	411, 717
HinfI	GANTC	4 cut(s)	197, 254, 288, 766
HphI	GGTGA	2 cut(s)	107, 419
Hpy166II	GTNNAC	2 cut(s)	114, 608
Hpy188I	TCNGA	4 cut(s)	519, 576, 787, 808
Hpy188III	TCNNGA	5 cut(s)	89, 214, 550, 667, 673
Hpy8I	GTNNAC	2 cut(s)	114, 608
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	1 cut(s)	857
HpyCH4III	ACNGT	2 cut(s)	122, 534
HpyCH4IV	ACGT	1 cut(s)	563
HpyCH4V	TGCA	6 cut(s)	127, 266, 299, 624, 731, 856
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	4 cut(s)	302, 495, 516, 642
HpySE526I	ACGT	1 cut(s)	563
Hsp92II	CATG	7 cut(s)	92, 112, 160, 299, 378, 406, 755
HspAI	GCGC	1 cut(s)	419
Ksp22I	TGATCA	2 cut(s)	310, 669
Kzo9I	GATC	3 cut(s)	310, 669, 686
LmnI	GCTCC	2 cut(s)	526, 907
Lsp1109I	GCAGC	3 cut(s)	186, 250, 587
LweI	GCATC	2 cut(s)	219, 580
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	563
MaeIII	GTNAC	4 cut(s)	167, 289, 346, 628
MalI	GATC	3 cut(s)	312, 671, 688
MboI	GATC	3 cut(s)	310, 669, 686
MboII	GAAGA	1 cut(s)	297
MfeI	CAATTG	1 cut(s)	381
MhlI	GDGCHC	2 cut(s)	328, 759
MluCI	AATT	8 cut(s)	30, 340, 364, 381, 480, 662, 816, 822
MlyI	GAGTC	2 cut(s)	248, 297
MseI	TTAA	2 cut(s)	389, 819
MslI	CAYNNNNRTG	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	894
MspCI	CTTAAG	1 cut(s)	388
MspR9I	CCNGG	1 cut(s)	27
MunI	CAATTG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	3 cut(s)	310, 669, 686
NlaIII	CATG	7 cut(s)	92, 112, 160, 299, 378, 406, 755
NlaIV	GGNNCC	2 cut(s)	16, 903
NmuCI	GTSAC	2 cut(s)	289, 346
NsbI	TGCGCA	1 cut(s)	420
NspI	RCATGY	2 cut(s)	112, 299
PagI	TCATGA	1 cut(s)	88
PceI	AGGCCT	2 cut(s)	228, 493
PciI	ACATGT	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	197, 766
PflMI	CCANNNNNTGG	1 cut(s)	881
PkrI	GCNGC	4 cut(s)	176, 234, 265, 602
PleI	GAGTC	2 cut(s)	248, 296
PpsI	GAGTC	2 cut(s)	248, 296
PscI	ACATGT	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	16, 903
PstNI	CAGNNNCTG	1 cut(s)	881
RsaI	GTAC	3 cut(s)	103, 451, 657
RsaNI	GTAC	3 cut(s)	102, 450, 656
RseI	CAYNNNNRTG	1 cut(s)	93
SacI	GAGCTC	1 cut(s)	328
SaqAI	TTAA	2 cut(s)	389, 819
SatI	GCNGC	4 cut(s)	175, 233, 264, 601
Sau3AI	GATC	3 cut(s)	310, 669, 686
SchI	GAGTC	2 cut(s)	248, 297
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	2 cut(s)	328, 759
SfaNI	GCATC	2 cut(s)	219, 580
SfcI	CTRYAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	3 cut(s)	66, 359, 388
SmoI	CTYRAG	3 cut(s)	66, 359, 388
Sse9I	AATT	8 cut(s)	30, 340, 364, 381, 480, 662, 816, 822
SseBI	AGGCCT	2 cut(s)	228, 493
SsiI	CCGC	3 cut(s)	232, 282, 892
SspMI	CTAG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	328
StuI	AGGCCT	2 cut(s)	228, 493
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	2 cut(s)	122, 534
TaiI	ACGT	1 cut(s)	566
TasI	AATT	8 cut(s)	30, 340, 364, 381, 480, 662, 816, 822
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	2 cut(s)	197, 766
Tru1I	TTAA	2 cut(s)	389, 819
Tru9I	TTAA	2 cut(s)	389, 819
TscAI	CASTG	2 cut(s)	121, 310
TseFI	GTSAC	2 cut(s)	289, 346
TseI	GCWGC	3 cut(s)	174, 263, 600
Tsp45I	GTSAC	2 cut(s)	289, 346
TspDTI	ATGAA	3 cut(s)	77, 266, 740
TspGWI	ACGGA	3 cut(s)	684, 875, 894
TspRI	CASTG	2 cut(s)	121, 310
Van91I	CCANNNNNTGG	1 cut(s)	881
Vha464I	CTTAAG	1 cut(s)	388
XapI	RAATTY	1 cut(s)	480
XceI	RCATGY	2 cut(s)	112, 299
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.