Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002019

Physical Location & Seq

Genomic Coordinates Reverse (-)

25549806 .. 25552915

Gene Structure 3110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0263700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGAAATTCTACTGTAGGAAAGGGTGGTGCAAAAACACAGAAGAAAGCTGGGTTTGGTGGAAGGAAACCTCTAGGAGATGTATCGAACACTGGGAAGCCTGATTTTTCCAAGGTGTCGAAAAAGCCTGCTCTTACCAATGTTTCTGAAATCATTGCTGATGCAAGCAACAAGAAAGGCCTTTCTAAAGCCTCGGATAAAGTGCAGACTCGTGGCAGTCGGAAGGCACTATCTGATGTGTCTAACACGGTCAAGCCACCTGTGCATAAGAAGTCAAGTGTTGCGGCACAAACACCTTGTGGTTTTGAGGAGGAAGGTTTCCTGCATGACCATCAACAGTGCATCAAATCTATGAGAAAGGCTAATCACATGGATCAAATGGATTTTTTTATGATGATACAAGGATCAGATTCATCCAAGAAGCTTCTGTCTCCATGTGCAGTTTCTCAGTTTCGTAAAGTTGAGCTGGATAATCCCATGAAGTACTTGGATTTGAAAGAGATGCCTGAGCTGTCTATCAAGCTTGACTCTTCACCTCATTGCAAGTCTCCACTATCACCAAATCATACAAAGTCCACTTGGGTTTGGGATGATTGTGATTTTCAGGTGATGGAAACACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

207

Amino Acids

22.67

Weight (kDa)

9.3

Isoelectric Point (pI)

23.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24360 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170
fragaria_vesca	FvH4_4g00150 FvH4_4g00150 FvH4_4g00150 FvH4_4g00150
malus_domestica	MD00G1091600.v1.1 MD04G1001200.v1.1 MD04G1001300.v1.1 MD13G1286000.v1.1
prunus_persica	Prupe.1G001200_v2.0.a1 Prupe.1G001300_v2.0.a1
pyrus_communis	pycom04g00180 pycom04g00190 pycom420g00210
rosa_chinensis	RchiOBHm_Chr3g0494021 RchiOBHm_Chr4g0384771
rosa_laevigata	RLG00000010273 RLG00000022687
rosa_multiflora	Rmu_sc0001322.1_g000022 Rmu_sc0003412.1_g000004
rosa_roxburghii	Rroxscaffold_5G00332830 Rroxscaffold_6G00391360
rosa_rugosa	Rorug03G0263700 Rorug03G0297500 Rorug03G0297500
rosa_samantha	Rh3AG313300 Rh3BG349400 Rh3CG346200 Rh3DG348700 Rh4AG001100 Rh4BG001000 Rh4CG000900 Rh4DG001000
rosa_wichuraiana	Rw3G027420 Rw4G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	2 cut(s)	381, 412
AcsI	RAATTY	1 cut(s)	7
AdeI	CACNNNGTG	1 cut(s)	299
AfaI	GTAC	1 cut(s)	485
AgsI	TTSAA	1 cut(s)	496
AluBI	AGCT	5 cut(s)	50, 424, 466, 511, 523
AluI	AGCT	5 cut(s)	50, 424, 466, 511, 523
Alw26I	GTCTC	2 cut(s)	435, 552
AlwI	GGATC	2 cut(s)	381, 412
AoxI	GGCC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	7
AsuHPI	GGTGA	3 cut(s)	525, 549, 619
BauI	CACGAG	1 cut(s)	210
BccI	CCATC	2 cut(s)	339, 604
BcoDI	GTCTC	2 cut(s)	435, 552
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
BmcAI	AGTACT	1 cut(s)	485
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	3 cut(s)	151, 351, 492
BmuI	ACTGGG	1 cut(s)	102
Bpu10I	CCTNAGC	1 cut(s)	507
BsaJI	CCNNGG	2 cut(s)	111, 192
Bse1I	ACTGG	1 cut(s)	97
Bse3DI	GCAATG	2 cut(s)	153, 538
BseDI	CCNNGG	2 cut(s)	111, 192
BseGI	GGATG	2 cut(s)	413, 595
BseMI	GCAATG	2 cut(s)	153, 538
BseMII	CTCAG	2 cut(s)	461, 498
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	323
BseYI	CCCAGC	1 cut(s)	50
BsgI	GTGCAG	2 cut(s)	224, 459
BshFI	GGCC	1 cut(s)	180
BsmAI	GTCTC	2 cut(s)	435, 552
BsnI	GGCC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	373, 404
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	2 cut(s)	460, 499
BspPI	GGATC	2 cut(s)	381, 412
BsrDI	GCAATG	2 cut(s)	153, 538
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	111, 192
BssMI	GATC	2 cut(s)	373, 404
BssSI	CACGAG	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	210
Bst4CI	ACNGT	3 cut(s)	16, 250, 339
Bst6I	CTCTTC	1 cut(s)	535
BstC8I	GCNNGC	2 cut(s)	129, 166
BstDEI	CTNAG	3 cut(s)	447, 507, 621
BstF5I	GGATG	2 cut(s)	413, 595
BstKTI	GATC	2 cut(s)	376, 407
BstMAI	GTCTC	2 cut(s)	435, 552
BstMBI	GATC	2 cut(s)	373, 404
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	413, 595
BtsIMutI	CAGTG	2 cut(s)	90, 344
Cac8I	GCNNGC	2 cut(s)	129, 166
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	4 cut(s)	326, 370, 435, 478
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	3 cut(s)	447, 507, 621
DpnI	GATC	2 cut(s)	375, 406
DpnII	GATC	2 cut(s)	373, 404
DraIII	CACNNNGTG	1 cut(s)	299
Eam1104I	CTCTTC	1 cut(s)	535
EarI	CTCTTC	1 cut(s)	535
Eco130I	CCWWGG	1 cut(s)	111
Eco147I	AGGCCT	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	4 cut(s)	329, 373, 438, 481
FaiI	YATR	8 cut(s)	267, 327, 353, 371, 392, 436, 479, 567
FatI	CATG	4 cut(s)	325, 369, 434, 477
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	2 cut(s)	400, 602
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	1 cut(s)	285
GsaI	CCCAGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	180
Hin1II	CATG	4 cut(s)	329, 373, 438, 481
HindIII	AAGCTT	2 cut(s)	422, 521
HinfI	GANTC	3 cut(s)	208, 410, 527
HphI	GGTGA	3 cut(s)	525, 549, 619
Hpy166II	GTNNAC	1 cut(s)	576
Hpy188I	TCNGA	5 cut(s)	148, 196, 222, 235, 409
Hpy8I	GTNNAC	1 cut(s)	576
HpyAV	CCTTC	3 cut(s)	57, 217, 308
HpyCH4III	ACNGT	3 cut(s)	16, 250, 339
HpyCH4V	TGCA	8 cut(s)	32, 164, 205, 265, 325, 342, 440, 543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	3 cut(s)	447, 507, 621
Hsp92II	CATG	4 cut(s)	329, 373, 438, 481
Kzo9I	GATC	2 cut(s)	373, 404
LpnPI	CCDG	9 cut(s)	36, 78, 114, 141, 273, 335, 452, 519, 590
LweI	GCATC	3 cut(s)	151, 351, 492
MaeI	CTAG	1 cut(s)	74
MalI	GATC	2 cut(s)	375, 406
MboI	GATC	2 cut(s)	373, 404
MboII	GAAGA	2 cut(s)	55, 522
MluCI	AATT	1 cut(s)	7
MlyI	GAGTC	2 cut(s)	202, 521
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	5 cut(s)	81, 202, 301, 304, 546
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeII	GATC	2 cut(s)	373, 404
NlaIII	CATG	4 cut(s)	329, 373, 438, 481
PceI	AGGCCT	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	410
PkrI	GCNGC	1 cut(s)	286
PleI	GAGTC	2 cut(s)	202, 521
PpsI	GAGTC	2 cut(s)	202, 521
PspFI	CCCAGC	1 cut(s)	50
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	2 cut(s)	373, 404
ScaI	AGTACT	1 cut(s)	485
SchI	GAGTC	2 cut(s)	202, 521
SfaNI	GCATC	3 cut(s)	151, 351, 492
SfcI	CTRYAG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	7
SseBI	AGGCCT	1 cut(s)	180
SsiI	CCGC	1 cut(s)	284
SspMI	CTAG	1 cut(s)	74
StuI	AGGCCT	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	3 cut(s)	16, 250, 339
TaqI	TCGA	2 cut(s)	86, 119
TasI	AATT	1 cut(s)	7
TatI	WGTACW	1 cut(s)	483
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	410
TscAI	CASTG	2 cut(s)	97, 344
TspDTI	ATGAA	2 cut(s)	402, 494
TspRI	CASTG	2 cut(s)	97, 344
XapI	RAATTY	1 cut(s)	7
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
XspI	CTAG	1 cut(s)	74
ZrmI	AGTACT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.