Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002019

Physical Location & Seq

Genomic Coordinates Reverse (-)

44230452 .. 44235857

Gene Structure 5406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1286000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGTTGGAGGGCGGTGCCAAATTCACTGGAATTATTGGTCTAAATAACCATGATATTAACTATGACGATTTGTCGCAAGGCTTCTACCTCAAACTCCATGAGGGTGAAGGTACCAACATGTCCATCGACAGTATGCAAACAAGCAATGATGGAGGCTCTGTAGCCATGTCTATAGACAACAGCAGTGTTGGTTCAAATACTAATGATTCGCACACTCGCATCTTGAACCACCAAGGCCTGCGGCGACGTGCAAATGACAACTACTCTGTGCAACATAGTGTTAACCACCGAGGAAGAGTCACACATGCTCTGAGTAATGATCAGCTTGCTCAAGCTCTACTGGACAGCCATTCCTTGACGGAGGGGCTTGAGAATTATGAGGAGTGGACAATTGACTTAAGAAAGCTAAACATGGGTGAAGCTTTTGCACAAGGTGCTTTTGGGAAGCTATATAGAGGTACCTACAATGGTGAAGATGTTGCCATCAAACTTTTGGAAAGTCCGGTAAATGACCTAGAAAAGGCTCAGGTGATGGAGCAGCAGTTTCAACAAGAAGTCAAGATGCTGGCTACATTAAAGCATCCAAACATAGTTCGTTTCATTGGTGCCTGCCGTAAACCAATGGTTTGGTGCATCGTAACTGAGTATGCTAAGGGGGGTTCAGTTCGGCAGTTCTTGGCGAAGCGGCAGAGCCGATCAGTTCCATTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCGAGGGGGTTTGCGTATGTTCATGGGCTCGGTCTGATTCACAGGGACTTGAAATCTGACAACCTGTTGATTTCTTCAGACAAATCTATAAAAATTGCTGATTTTGGAGTTGCCCGTATTGAGGTGCAGACAGAAGGAATGACGCCGGAGACTGGGACATACCGCTGGATGGCGCCGGAGATGATCCAGCACAGGCATTACACACAGAAAGTTGACGTTTATAGCTTTGGGATAGTTCTTTGGGAACTTATAACAGGGATGCTTCCATTCCAGAACATGACAGCGGTACAGGCAGCATTTGCAGTTGTCAATAAGGGTGTCCGCCCTATCATTCCAAATGACTGCTTACCTGTTCTTTGTGAGATCATGACGAGATGTTGGGATGCAAACCCTGATGTCAGGCCACCCTTCACTGAAGTCGTGAGAATGCTCGAGCATGCAGAGACTGAGATCATGACGACTGTTCGGAAGGCTCGGTTCAGGTGTTGCATTACCCAACCAATGACAGCGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

418

Amino Acids

46.76

Weight (kDa)

6.54

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	137 - 390	9.5e-66	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	143 - 388	1.4e-53	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24360 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170
fragaria_vesca	FvH4_4g00150 FvH4_4g00150 FvH4_4g00150 FvH4_4g00150
malus_domestica	MD00G1091600.v1.1 MD04G1001200.v1.1 MD04G1001300.v1.1 MD13G1286000.v1.1
prunus_persica	Prupe.1G001200_v2.0.a1 Prupe.1G001300_v2.0.a1
pyrus_communis	pycom04g00180 pycom04g00190 pycom420g00210
rosa_chinensis	RchiOBHm_Chr3g0494021 RchiOBHm_Chr4g0384771
rosa_laevigata	RLG00000010273 RLG00000022687
rosa_multiflora	Rmu_sc0001322.1_g000022 Rmu_sc0003412.1_g000004
rosa_roxburghii	Rroxscaffold_5G00332830 Rroxscaffold_6G00391360
rosa_rugosa	Rorug03G0263700 Rorug03G0297500 Rorug03G0297500
rosa_samantha	Rh3AG313300 Rh3BG349400 Rh3CG346200 Rh3DG348700 Rh4AG001100 Rh4BG001000 Rh4CG000900 Rh4DG001000
rosa_wichuraiana	Rw3G027420 Rw4G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	989
Acc65I	GGTACC	2 cut(s)	110, 458
AccB1I	GGYRCC	5 cut(s)	14, 110, 458, 605, 910
AciI	CCGC	7 cut(s)	12, 241, 685, 901, 1022, 1060, 1247
AclWI	GGATC	1 cut(s)	916
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	2 cut(s)	798, 1173
AcyI	GRCGYC	2 cut(s)	881, 911
AdeI	CACNNNGTG	1 cut(s)	434
AfaI	GTAC	3 cut(s)	112, 460, 1026
AfiI	CCNNNNNNNGG	4 cut(s)	520, 859, 890, 907
AflII	CTTAAG	1 cut(s)	397
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	5 cut(s)	195, 226, 548, 709, 790
AhdI	GACNNNNNGTC	1 cut(s)	70
AjiI	CACGTC	1 cut(s)	248
AluBI	AGCT	8 cut(s)	325, 335, 406, 422, 448, 716, 728, 963
AluI	AGCT	8 cut(s)	325, 335, 406, 422, 448, 716, 728, 963
Alw26I	GTCTC	2 cut(s)	881, 1175
AlwI	GGATC	1 cut(s)	916
AlwNI	CAGNNNCTG	1 cut(s)	1184
Ama87I	CYCGRG	1 cut(s)	1169
AoxI	GGCC	2 cut(s)	235, 1139
ApeKI	GCWGC	2 cut(s)	538, 1031
ApoI	RAATTY	1 cut(s)	20
Asp718I	GGTACC	2 cut(s)	110, 458
AspLEI	GCGC	1 cut(s)	913
AsuHPI	GGTGA	4 cut(s)	116, 428, 482, 541
AvaI	CYCGRG	1 cut(s)	1169
BanI	GGYRCC	5 cut(s)	14, 110, 458, 605, 910
BanII	GRGCYC	1 cut(s)	768
BbvI	GCAGC	2 cut(s)	550, 1043
BccI	CCATC	5 cut(s)	131, 143, 491, 526, 901
BceAI	ACGGC	1 cut(s)	597
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	881, 1175
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	2 cut(s)	159, 171
BfoI	RGCGCY	1 cut(s)	914
BfrI	CTTAAG	1 cut(s)	397
BisI	GCNGC	4 cut(s)	242, 539, 686, 1032
BlsI	GCNGC	4 cut(s)	243, 540, 687, 1033
BmeRI	GACNNNNNGTC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	1169
BmgBI	CACGTC	1 cut(s)	248
BmiI	GGNNCC	5 cut(s)	16, 112, 460, 607, 912
BmrI	ACTGGG	1 cut(s)	900
BmsI	GCATC	6 cut(s)	228, 552, 589, 642, 987, 1111
BmuI	ACTGGG	1 cut(s)	900
Bpu10I	CCTNAGC	2 cut(s)	525, 651
BpuEI	CTTGAG	2 cut(s)	315, 389
BsaHI	GRCGYC	2 cut(s)	881, 911
BsaJI	CCNNGG	2 cut(s)	232, 289
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	4 cut(s)	144, 174, 527, 557
Bsc4I	CCNNNNNNNGG	4 cut(s)	520, 859, 890, 907
Bse1I	ACTGG	3 cut(s)	31, 345, 895
Bse3DI	GCAATG	1 cut(s)	151
BseDI	CCNNGG	2 cut(s)	232, 289
BseGI	GGATG	5 cut(s)	580, 739, 912, 1002, 1126
BseLI	CCNNNNNNNGG	4 cut(s)	520, 859, 890, 907
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	4 cut(s)	302, 539, 633, 1176
BseNI	ACTGG	3 cut(s)	31, 345, 895
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	2 cut(s)	550, 1043
BsgI	GTGCAG	1 cut(s)	884
BshFI	GGCC	2 cut(s)	237, 1141
BshNI	GGYRCC	5 cut(s)	14, 110, 458, 605, 910
BsiHKCI	CYCGRG	1 cut(s)	1169
BsiSI	CCGG	3 cut(s)	503, 884, 914
BslFI	GGGAC	2 cut(s)	797, 907
BslI	CCNNNNNNNGG	4 cut(s)	520, 859, 890, 907
BsmAI	GTCTC	2 cut(s)	881, 1175
BsmFI	GGGAC	2 cut(s)	797, 907
BsmI	GAATGC	1 cut(s)	1170
BsnI	GGCC	2 cut(s)	237, 1141
BsoBI	CYCGRG	1 cut(s)	1169
Bsp1286I	GDGCHC	1 cut(s)	768
Bsp143I	GATC	5 cut(s)	319, 695, 921, 1101, 1188
BspACI	CCGC	7 cut(s)	12, 241, 685, 901, 1022, 1060, 1247
BspANI	GGCC	2 cut(s)	237, 1141
BspCNI	CTCAG	4 cut(s)	303, 538, 634, 1177
BspHI	TCATGA	2 cut(s)	1104, 1191
BspLI	GGNNCC	5 cut(s)	16, 112, 460, 607, 912
BspPI	GGATC	1 cut(s)	916
BspT107I	GGYRCC	5 cut(s)	14, 110, 458, 605, 910
BspTI	CTTAAG	1 cut(s)	397
BsrDI	GCAATG	1 cut(s)	151
BsrI	ACTGG	3 cut(s)	31, 345, 895
BssECI	CCNNGG	2 cut(s)	232, 289
BssMI	GATC	5 cut(s)	319, 695, 921, 1101, 1188
BssNI	GRCGYC	2 cut(s)	881, 911
BssT1I	CCWWGG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	131, 1201
Bst6I	CTCTTC	1 cut(s)	289
BstACI	GRCGYC	2 cut(s)	881, 911
BstAFI	CTTAAG	1 cut(s)	397
BstAPI	GCANNNNNTGC	2 cut(s)	434, 1037
BstC8I	GCNNGC	5 cut(s)	239, 327, 567, 610, 1176
BstDEI	CTNAG	5 cut(s)	311, 525, 642, 651, 1185
BstENI	CCTNNNNNAGG	1 cut(s)	518
BstF5I	GGATG	5 cut(s)	580, 739, 912, 1002, 1126
BstH2I	RGCGCY	1 cut(s)	914
BstHHI	GCGC	1 cut(s)	913
BstKTI	GATC	5 cut(s)	322, 698, 924, 1104, 1191
BstMAI	GTCTC	2 cut(s)	881, 1175
BstMBI	GATC	5 cut(s)	319, 695, 921, 1101, 1188
BstMWI	GCNNNNNNNGC	3 cut(s)	434, 1028, 1037
BstNSI	RCATGY	3 cut(s)	121, 308, 1178
BstSFI	CTRYAG	2 cut(s)	159, 171
BstV1I	GCAGC	2 cut(s)	550, 1043
BstXI	CCANNNNNNTGG	1 cut(s)	627
BsuRI	GGCC	2 cut(s)	237, 1141
BtrI	CACGTC	1 cut(s)	248
BtsCI	GGATG	5 cut(s)	580, 739, 912, 1002, 1126
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	3 cut(s)	24, 190, 1149
Cac8I	GCNNGC	5 cut(s)	239, 327, 567, 610, 1176
CaiI	CAGNNNCTG	1 cut(s)	1184
CciI	TCATGA	2 cut(s)	1104, 1191
CfoI	GCGC	1 cut(s)	913
CseI	GACGC	1 cut(s)	889
Csp6I	GTAC	3 cut(s)	111, 459, 1025
CviQI	GTAC	3 cut(s)	111, 459, 1025
DdeI	CTNAG	5 cut(s)	311, 525, 642, 651, 1185
DinI	GGCGCC	1 cut(s)	912
DpnI	GATC	5 cut(s)	321, 697, 923, 1103, 1190
DpnII	GATC	5 cut(s)	319, 695, 921, 1101, 1188
DraIII	CACNNNGTG	1 cut(s)	434
DriI	GACNNNNNGTC	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	289
Eam1105I	GACNNNNNGTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	289
EciI	GGCGGA	1 cut(s)	1049
Eco130I	CCWWGG	1 cut(s)	232
Eco147I	AGGCCT	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	768
Eco57I	CTGAAG	2 cut(s)	798, 1173
Eco88I	CYCGRG	1 cut(s)	1169
EcoNI	CCTNNNNNAGG	1 cut(s)	518
EcoT14I	CCWWGG	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	768
EgeI	GGCGCC	1 cut(s)	912
EheI	GGCGCC	1 cut(s)	912
ErhI	CCWWGG	1 cut(s)	232
FaqI	GGGAC	2 cut(s)	797, 907
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	4 cut(s)	242, 539, 686, 1032
FokI	GGATG	5 cut(s)	567, 746, 919, 1009, 1133
FriOI	GRGCYC	1 cut(s)	768
Fsp4HI	GCNGC	4 cut(s)	242, 539, 686, 1032
FspBI	CTAG	1 cut(s)	515
GlaI	GCGC	1 cut(s)	912
GluI	GCNGC	4 cut(s)	242, 539, 686, 1032
HaeII	RGCGCY	1 cut(s)	914
HaeIII	GGCC	2 cut(s)	237, 1141
HapII	CCGG	3 cut(s)	503, 884, 914
HgaI	GACGC	1 cut(s)	889
HhaI	GCGC	1 cut(s)	913
Hin1I	GRCGYC	2 cut(s)	881, 911
Hin6I	GCGC	1 cut(s)	911
HinP1I	GCGC	1 cut(s)	911
HincII	GTYRAC	2 cut(s)	283, 952
HindII	GTYRAC	2 cut(s)	283, 952
HindIII	AAGCTT	2 cut(s)	420, 726
HinfI	GANTC	3 cut(s)	206, 297, 775
HpaI	GTTAAC	1 cut(s)	283
HpaII	CCGG	3 cut(s)	503, 884, 914
HphI	GGTGA	4 cut(s)	116, 428, 482, 541
Hpy166II	GTNNAC	4 cut(s)	283, 387, 617, 952
Hpy188I	TCNGA	5 cut(s)	312, 774, 796, 817, 1206
Hpy188III	TCNNGA	6 cut(s)	223, 559, 1009, 1105, 1159, 1192
Hpy8I	GTNNAC	4 cut(s)	283, 387, 617, 952
Hpy99I	CGWCG	1 cut(s)	249
HpyAV	CCTTC	4 cut(s)	101, 866, 1156, 1201
HpyCH4III	ACNGT	2 cut(s)	131, 1201
HpyCH4IV	ACGT	2 cut(s)	247, 954
HpyF10VI	GCNNNNNNNGC	3 cut(s)	434, 1028, 1037
HpyF3I	CTNAG	5 cut(s)	311, 525, 642, 651, 1185
HpySE526I	ACGT	2 cut(s)	247, 954
Hsp92I	GRCGYC	2 cut(s)	881, 911
HspAI	GCGC	1 cut(s)	911
KasI	GGCGCC	1 cut(s)	910
KpnI	GGTACC	2 cut(s)	114, 462
Ksp22I	TGATCA	1 cut(s)	319
KspAI	GTTAAC	1 cut(s)	283
Kzo9I	GATC	5 cut(s)	319, 695, 921, 1101, 1188
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	2 cut(s)	550, 1043
LweI	GCATC	6 cut(s)	228, 552, 589, 642, 987, 1111
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	2 cut(s)	247, 954
MaeIII	GTNAC	2 cut(s)	298, 637
MalI	GATC	5 cut(s)	321, 697, 923, 1103, 1190
MboI	GATC	5 cut(s)	319, 695, 921, 1101, 1188
MboII	GAAGA	3 cut(s)	306, 485, 804
MfeI	CAATTG	1 cut(s)	390
MhlI	GDGCHC	1 cut(s)	768
MluCI	AATT	6 cut(s)	20, 30, 373, 390, 710, 831
Mly113I	GGCGCC	1 cut(s)	911
MlyI	GAGTC	1 cut(s)	306
MnlI	CCTC	9 cut(s)	94, 98, 146, 284, 355, 373, 449, 735, 853
MseI	TTAA	4 cut(s)	57, 282, 398, 575
MslI	CAYNNNNRTG	1 cut(s)	102
MspA1I	CMGCKG	3 cut(s)	903, 1022, 1247
MspCI	CTTAAG	1 cut(s)	397
MspI	CCGG	3 cut(s)	503, 884, 914
MunI	CAATTG	1 cut(s)	390
Mva1269I	GAATGC	1 cut(s)	1170
MwoI	GCNNNNNNNGC	3 cut(s)	434, 1028, 1037
NarI	GGCGCC	1 cut(s)	911
NdeII	GATC	5 cut(s)	319, 695, 921, 1101, 1188
NlaIV	GGNNCC	5 cut(s)	16, 112, 460, 607, 912
NmuCI	GTSAC	1 cut(s)	298
NspI	RCATGY	3 cut(s)	121, 308, 1178
PaeI	GCATGC	1 cut(s)	1178
PaeR7I	CTCGAG	1 cut(s)	1169
PagI	TCATGA	2 cut(s)	1104, 1191
PceI	AGGCCT	1 cut(s)	237
PciI	ACATGT	1 cut(s)	117
PctI	GAATGC	1 cut(s)	1170
PfeI	GAWTC	2 cut(s)	206, 775
PkrI	GCNGC	4 cut(s)	243, 540, 687, 1033
PleI	GAGTC	1 cut(s)	305
PluTI	GGCGCC	1 cut(s)	914
PpsI	GAGTC	1 cut(s)	305
PscI	ACATGT	1 cut(s)	117
PsiI	TTATAA	1 cut(s)	989
PspN4I	GGNNCC	5 cut(s)	16, 112, 460, 607, 912
PspXI	VCTCGAGB	1 cut(s)	1169
PstNI	CAGNNNCTG	1 cut(s)	1184
RsaI	GTAC	3 cut(s)	112, 460, 1026
RsaNI	GTAC	3 cut(s)	111, 459, 1025
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	4 cut(s)	57, 282, 398, 575
SatI	GCNGC	4 cut(s)	242, 539, 686, 1032
Sau3AI	GATC	5 cut(s)	319, 695, 921, 1101, 1188
SchI	GAGTC	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	768
SfaNI	GCATC	6 cut(s)	228, 552, 589, 642, 987, 1111
SfcI	CTRYAG	2 cut(s)	159, 171
SfoI	GGCGCC	1 cut(s)	912
Sfr274I	CTCGAG	1 cut(s)	1169
SlaI	CTCGAG	1 cut(s)	1169
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	4 cut(s)	330, 368, 397, 1169
SmoI	CTYRAG	4 cut(s)	330, 368, 397, 1169
SphI	GCATGC	1 cut(s)	1178
Sse9I	AATT	6 cut(s)	20, 30, 373, 390, 710, 831
SseBI	AGGCCT	1 cut(s)	237
SsiI	CCGC	7 cut(s)	12, 241, 685, 901, 1022, 1060, 1247
SspDI	GGCGCC	1 cut(s)	910
SspMI	CTAG	1 cut(s)	515
StuI	AGGCCT	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	2 cut(s)	131, 1201
TaiI	ACGT	2 cut(s)	250, 957
TaqI	TCGA	2 cut(s)	126, 1170
TaqII	GACCGA	1 cut(s)	758
TasI	AATT	6 cut(s)	20, 30, 373, 390, 710, 831
TauI	GCSGC	2 cut(s)	244, 688
TfiI	GAWTC	2 cut(s)	206, 775
Tru1I	TTAA	4 cut(s)	57, 282, 398, 575
Tru9I	TTAA	4 cut(s)	57, 282, 398, 575
TscAI	CASTG	3 cut(s)	31, 190, 1156
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	2 cut(s)	538, 1031
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	2 cut(s)	589, 749
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	3 cut(s)	31, 190, 1156
Vha464I	CTTAAG	1 cut(s)	397
XagI	CCTNNNNNAGG	1 cut(s)	518
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	3 cut(s)	121, 308, 1178
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XhoI	CTCGAG	1 cut(s)	1169
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.