Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002019

Physical Location & Seq

Genomic Coordinates Reverse (-)

39900502 .. 39907115

Gene Structure 6614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG313300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTTGGAAGGTGGTGCCAAGTTCACTGGAATTATAGGTCTAAACAACAACGATTATGATTTGTCTCAAGGCTTTTACCACAAACTTCATGAGGGTGAGGGTACTAACATGTCCACTGACAGTATGCAAACTAGCGTTGATGGAGGCTCTGTCGCCATGTCTATAGATAACAGCAGCGTTGCTTCAAATACCAATGATTCCCACACTCGCATCTTGAAGCACCAAGGCCTGCGGCGACGCAGAAATGACAACGACTCTGTTGCTGCACAAAGTGTTAATCGCGGAAGAGTCACACATGCACTCAGTGATGATCAACTTGCCCGAGCTCTAATGGACAGCAATTCTGTCACAGAGGGGCTTGAGAATTATGAGGCATGGACAATTGACTTAAGAAAGCTAAACATGGGTGAAGCTTTTGCGCAAGGTGCTTTTGGGAAGCTATATAGAGGTACTTACAATGGCGAGGATGTTGCTATCAAAATTTTGGAGAGGCCTGAGAATGACCCAGAAAAGGCTCAGATAATGGAGCAACAGTTTCAACAGGAAGTCAAGATGTTGGCTACGTTGAAGCATCCGAACATAGTTCGTTTTATCGGTGGCTGCCGTAAACCAATGGTTTGGTGCATTGTAACAGAATATGCTAAGGGTGGTTCAGTACGGCAATTCTTGATCAAGAGGCAGAGCCGATCAGTTCCGTTGAAGTTAGCAGTCAAGCAAGCTTTGGATGTTGCAAGGGGGATGGCATATGTTCATGGGCTCGGGCTGATTCACAGGGACTTGAAATCGGACAACCTTTTGATTTTTTCAGACAAATCAATTAAAATTGCTGATTTTGGGGTTGCCCGTATTGAGGTGCAGACGGAAGGAATGACCCCAGAGACTGGGACATACCGCTGGATGGCTCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

302

Amino Acids

33.57

Weight (kDa)

7.79

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	134 - 302	6.6e-37	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	140 - 302	5.8e-36	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24360 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170
fragaria_vesca	FvH4_4g00150 FvH4_4g00150 FvH4_4g00150 FvH4_4g00150
malus_domestica	MD00G1091600.v1.1 MD04G1001200.v1.1 MD04G1001300.v1.1 MD13G1286000.v1.1
prunus_persica	Prupe.1G001200_v2.0.a1 Prupe.1G001300_v2.0.a1
pyrus_communis	pycom04g00180 pycom04g00190 pycom420g00210
rosa_chinensis	RchiOBHm_Chr3g0494021 RchiOBHm_Chr4g0384771
rosa_laevigata	RLG00000010273 RLG00000022687
rosa_multiflora	Rmu_sc0001322.1_g000022 Rmu_sc0003412.1_g000004
rosa_roxburghii	Rroxscaffold_5G00332830 Rroxscaffold_6G00391360
rosa_rugosa	Rorug03G0263700 Rorug03G0297500 Rorug03G0297500
rosa_samantha	Rh3AG313300 Rh3BG349400 Rh3CG346200 Rh3DG348700 Rh4AG001100 Rh4BG001000 Rh4CG000900 Rh4DG001000
rosa_wichuraiana	Rw3G027420 Rw4G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	420
AccB1I	GGYRCC	1 cut(s)	14
AccB7I	CCANNNNNTGG	1 cut(s)	881
AccII	CGCG	1 cut(s)	282
AciI	CCGC	3 cut(s)	232, 282, 892
AcsI	RAATTY	1 cut(s)	480
AdeI	CACNNNGTG	2 cut(s)	272, 305
AfaI	GTAC	3 cut(s)	103, 451, 657
AfiI	CCNNNNNNNGG	4 cut(s)	511, 850, 881, 898
AflII	CTTAAG	1 cut(s)	388
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	6 cut(s)	186, 217, 539, 568, 700, 781
AluBI	AGCT	5 cut(s)	326, 397, 413, 439, 719
AluI	AGCT	5 cut(s)	326, 397, 413, 439, 719
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	2 cut(s)	69, 872
AlwNI	CAGNNNCTG	1 cut(s)	881
Ama87I	CYCGRG	2 cut(s)	321, 758
AoxI	GGCC	2 cut(s)	226, 491
ApeKI	GCWGC	3 cut(s)	174, 263, 600
ApoI	RAATTY	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	421
AsuHPI	GGTGA	2 cut(s)	107, 419
AvaI	CYCGRG	2 cut(s)	321, 758
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	2 cut(s)	328, 759
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	3 cut(s)	186, 250, 587
BccI	CCATC	3 cut(s)	134, 733, 892
BceAI	ACGGC	2 cut(s)	588, 674
BcgI	CGANNNNNNTGC	4 cut(s)	242, 276, 452, 486
BclI	TGATCA	2 cut(s)	310, 669
BcoDI	GTCTC	2 cut(s)	69, 872
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	388
BisI	GCNGC	4 cut(s)	175, 233, 264, 601
BlsI	GCNGC	4 cut(s)	176, 234, 265, 602
BmeT110I	CYCGRG	2 cut(s)	321, 758
BmiI	GGNNCC	2 cut(s)	16, 903
BmrI	ACTGGG	1 cut(s)	891
BmsI	GCATC	2 cut(s)	219, 580
BmuI	ACTGGG	1 cut(s)	891
Bpu10I	CCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	2 cut(s)	51, 380
BsaJI	CCNNGG	1 cut(s)	223
BsaXI	ACNNNNNCTCC	4 cut(s)	135, 165, 518, 548
Bsc4I	CCNNNNNNNGG	4 cut(s)	511, 850, 881, 898
Bse1I	ACTGG	2 cut(s)	31, 886
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	5 cut(s)	472, 571, 730, 744, 903
BseLI	CCNNNNNNNGG	4 cut(s)	511, 850, 881, 898
BseMII	CTCAG	3 cut(s)	316, 486, 530
BseNI	ACTGG	2 cut(s)	31, 886
BseXI	GCAGC	3 cut(s)	186, 250, 587
BsgI	GTGCAG	2 cut(s)	249, 875
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	228, 493
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	328
BsiHKCI	CYCGRG	2 cut(s)	321, 758
BslFI	GGGAC	2 cut(s)	788, 898
BslI	CCNNNNNNNGG	4 cut(s)	511, 850, 881, 898
BsmAI	GTCTC	2 cut(s)	69, 872
BsmFI	GGGAC	2 cut(s)	788, 898
BsnI	GGCC	2 cut(s)	228, 493
BsoBI	CYCGRG	2 cut(s)	321, 758
Bsp1286I	GDGCHC	2 cut(s)	328, 759
Bsp143I	GATC	3 cut(s)	310, 669, 686
BspACI	CCGC	3 cut(s)	232, 282, 892
BspANI	GGCC	2 cut(s)	228, 493
BspCNI	CTCAG	3 cut(s)	315, 487, 529
BspFNI	CGCG	1 cut(s)	282
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	16, 903
BspT107I	GGYRCC	1 cut(s)	14
BspTI	CTTAAG	1 cut(s)	388
BsrI	ACTGG	2 cut(s)	31, 886
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	3 cut(s)	310, 669, 686
BssT1I	CCWWGG	1 cut(s)	223
Bst4CI	ACNGT	2 cut(s)	122, 534
Bst6I	CTCTTC	1 cut(s)	280
BstAFI	CTTAAG	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	230, 717
BstDEI	CTNAG	4 cut(s)	302, 495, 516, 642
BstF5I	GGATG	5 cut(s)	472, 571, 730, 744, 903
BstFNI	CGCG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	3 cut(s)	313, 672, 689
BstMAI	GTCTC	2 cut(s)	69, 872
BstMBI	GATC	3 cut(s)	310, 669, 686
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNSI	RCATGY	2 cut(s)	112, 299
BstSFI	CTRYAG	1 cut(s)	162
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	186, 250, 587
BstXI	CCANNNNNNTGG	1 cut(s)	618
BsuRI	GGCC	2 cut(s)	228, 493
BtsCI	GGATG	5 cut(s)	472, 571, 730, 744, 903
BtsIMutI	CAGTG	3 cut(s)	24, 114, 310
Cac8I	GCNNGC	2 cut(s)	230, 717
CaiI	CAGNNNCTG	1 cut(s)	881
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	1 cut(s)	421
CseI	GACGC	1 cut(s)	246
Csp6I	GTAC	3 cut(s)	102, 450, 656
CviAII	CATG	7 cut(s)	89, 109, 157, 296, 375, 403, 752
CviQI	GTAC	3 cut(s)	102, 450, 656
DdeI	CTNAG	4 cut(s)	302, 495, 516, 642
DpnI	GATC	3 cut(s)	312, 671, 688
DpnII	GATC	3 cut(s)	310, 669, 686
DraIII	CACNNNGTG	2 cut(s)	272, 305
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Ecl136II	GAGCTC	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	223
Eco147I	AGGCCT	2 cut(s)	228, 493
Eco24I	GRGCYC	2 cut(s)	328, 759
Eco53kI	GAGCTC	1 cut(s)	326
Eco88I	CYCGRG	2 cut(s)	321, 758
EcoICRI	GAGCTC	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	223
EcoT38I	GRGCYC	2 cut(s)	328, 759
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	7 cut(s)	92, 112, 160, 299, 378, 406, 755
FaqI	GGGAC	2 cut(s)	788, 898
FatI	CATG	7 cut(s)	88, 108, 156, 295, 374, 402, 751
FauNDI	CATATG	1 cut(s)	745
FbaI	TGATCA	2 cut(s)	310, 669
Fnu4HI	GCNGC	4 cut(s)	175, 233, 264, 601
FokI	GGATG	4 cut(s)	479, 558, 737, 751
FriOI	GRGCYC	2 cut(s)	328, 759
Fsp4HI	GCNGC	4 cut(s)	175, 233, 264, 601
FspBI	CTAG	1 cut(s)	132
FspI	TGCGCA	1 cut(s)	420
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	4 cut(s)	175, 233, 264, 601
HaeIII	GGCC	2 cut(s)	228, 493
HgaI	GACGC	1 cut(s)	246
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	7 cut(s)	92, 112, 160, 299, 378, 406, 755
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HindIII	AAGCTT	2 cut(s)	411, 717
HinfI	GANTC	4 cut(s)	197, 254, 288, 766
HphI	GGTGA	2 cut(s)	107, 419
Hpy166II	GTNNAC	3 cut(s)	24, 114, 608
Hpy188I	TCNGA	4 cut(s)	519, 576, 787, 808
Hpy188III	TCNNGA	5 cut(s)	89, 214, 550, 667, 673
Hpy8I	GTNNAC	3 cut(s)	24, 114, 608
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	1 cut(s)	857
HpyCH4III	ACNGT	2 cut(s)	122, 534
HpyCH4IV	ACGT	1 cut(s)	563
HpyCH4V	TGCA	6 cut(s)	127, 266, 299, 624, 731, 856
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	4 cut(s)	302, 495, 516, 642
HpySE526I	ACGT	1 cut(s)	563
Hsp92II	CATG	7 cut(s)	92, 112, 160, 299, 378, 406, 755
HspAI	GCGC	1 cut(s)	419
Ksp22I	TGATCA	2 cut(s)	310, 669
Kzo9I	GATC	3 cut(s)	310, 669, 686
LmnI	GCTCC	2 cut(s)	526, 907
LpnPI	CCDG	9 cut(s)	12, 242, 507, 519, 527, 757, 867, 880, 888
Lsp1109I	GCAGC	3 cut(s)	186, 250, 587
LweI	GCATC	2 cut(s)	219, 580
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	563
MaeIII	GTNAC	3 cut(s)	289, 346, 628
MalI	GATC	3 cut(s)	312, 671, 688
MboI	GATC	3 cut(s)	310, 669, 686
MboII	GAAGA	1 cut(s)	297
MfeI	CAATTG	1 cut(s)	381
MhlI	GDGCHC	2 cut(s)	328, 759
MluCI	AATT	8 cut(s)	30, 340, 364, 381, 480, 662, 816, 822
MlyI	GAGTC	2 cut(s)	248, 297
MseI	TTAA	3 cut(s)	276, 389, 819
MslI	CAYNNNNRTG	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	894
MspCI	CTTAAG	1 cut(s)	388
MunI	CAATTG	1 cut(s)	381
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	3 cut(s)	310, 669, 686
NlaIII	CATG	7 cut(s)	92, 112, 160, 299, 378, 406, 755
NlaIV	GGNNCC	2 cut(s)	16, 903
NmuCI	GTSAC	2 cut(s)	289, 346
NsbI	TGCGCA	1 cut(s)	420
NspI	RCATGY	2 cut(s)	112, 299
PagI	TCATGA	1 cut(s)	88
PceI	AGGCCT	2 cut(s)	228, 493
PciI	ACATGT	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	197, 766
PflMI	CCANNNNNTGG	1 cut(s)	881
PkrI	GCNGC	4 cut(s)	176, 234, 265, 602
PleI	GAGTC	2 cut(s)	248, 296
PpsI	GAGTC	2 cut(s)	248, 296
PscI	ACATGT	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	16, 903
PstNI	CAGNNNCTG	1 cut(s)	881
RsaI	GTAC	3 cut(s)	103, 451, 657
RsaNI	GTAC	3 cut(s)	102, 450, 656
RseI	CAYNNNNRTG	1 cut(s)	93
SacI	GAGCTC	1 cut(s)	328
SaqAI	TTAA	3 cut(s)	276, 389, 819
SatI	GCNGC	4 cut(s)	175, 233, 264, 601
Sau3AI	GATC	3 cut(s)	310, 669, 686
SchI	GAGTC	2 cut(s)	248, 297
SduI	GDGCHC	2 cut(s)	328, 759
SfaNI	GCATC	2 cut(s)	219, 580
SfcI	CTRYAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	3 cut(s)	66, 359, 388
SmoI	CTYRAG	3 cut(s)	66, 359, 388
Sse9I	AATT	8 cut(s)	30, 340, 364, 381, 480, 662, 816, 822
SseBI	AGGCCT	2 cut(s)	228, 493
SsiI	CCGC	3 cut(s)	232, 282, 892
SspMI	CTAG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	328
StuI	AGGCCT	2 cut(s)	228, 493
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	2 cut(s)	122, 534
TaiI	ACGT	1 cut(s)	566
TasI	AATT	8 cut(s)	30, 340, 364, 381, 480, 662, 816, 822
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	2 cut(s)	197, 766
Tru1I	TTAA	3 cut(s)	276, 389, 819
Tru9I	TTAA	3 cut(s)	276, 389, 819
TscAI	CASTG	3 cut(s)	31, 121, 310
TseFI	GTSAC	2 cut(s)	289, 346
TseI	GCWGC	3 cut(s)	174, 263, 600
Tsp45I	GTSAC	2 cut(s)	289, 346
TspDTI	ATGAA	2 cut(s)	77, 740
TspGWI	ACGGA	3 cut(s)	684, 875, 894
TspRI	CASTG	3 cut(s)	31, 121, 310
Van91I	CCANNNNNTGG	1 cut(s)	881
Vha464I	CTTAAG	1 cut(s)	388
XapI	RAATTY	1 cut(s)	480
XceI	RCATGY	2 cut(s)	112, 299
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.