MD04G1001300.v1.1

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
164503 .. 169628
5126 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1001300.v1.1.491

Sequence Viewer

Length: 1251 bp
ATGTTGGAGGGCGGTGCCAAATTCACTGGAATTATTGGTCTAAACAACCATGATAACAACTATGATGATTTGTCGCAAGGATTCTACCTCAAACTCCATGAGGGTGAGGGTACCAACATGTCCATCGACAGTATGCAAACGAGCAATGATGGAGGCTCTGTGGCCATGTCTATAGACAACAGCAGCGTTGCTTCAAATACTAATGATTCCCACACTCGAATCTTGAACCACCAAGGGCTGCGGCGACGTACTAAGGATAACTACTCCGTGCAACAGAGTGTTAACCACCGAGGAAGAGTCACACATGCTCTGAGTAATGATCAGCTTGCTCAAGCTCTACTTGACAGCCATTCCTCGACAGAAGGGCTTGAGAATTATGAAGAGTGGACAATTGACTTAAGAAAGCTAAACATGGGTGAAGCTTTTGCACAAGGTGCTTTTGGGAAGCTATATAGAGGTACCTACAATGGTGAAGATGTTGCTATCAAACTTTTGGAGAGTCCGGAAAATGACCCAGAAAAGGCTCAGGTGATGGAGCAGCAGTTTCAACAGGAAGTCAAGATGCTGGCTAATTTGAAGCATCCAAACATAGTTCGTTTCATCGGTGCTTGCCGTAAACCAATGGTTTGGTGCATTGTAACAGAGTATGCTAAGGGGGGTTCAGTTAGGCAGTTCTTGGCGAAGCGGCAGAGCCAATCAGTTCCATTGAAATTAGCAGTCAAGCAAGCATTAGATGTTGCAAGGGGGTTTGCTTATGTTCATGGGCTCGGTCTGATTCATAGGGACTTGAAATCTGACAACCTGTTGATTTCTTCTGACAAATCTATAAAAATTGCTGATTTTGGAGTTGCTCGTATTGAAGTGCAGACGGAAGGAATGACTCCGGAGACTGGGACATACCGCTGGATGGCGCCGGAGATGATCCAGCATAGGCATTACACACAGAAAGTTGACGTTTATAGCTTTGGGATTGTTCTTTGGGAACTTATAACGGGGATGCTTCCATTCCAGAACATGACAGCGGTACAGGCAGCATTTGCAGTTGTCAAGGGTGTCCGCCCTATCATTCCAAATGACTGCTTGCCTGTTCTTTGTGAGATCATGACGAGATGTTGGGATGCAAACCCTGAAGTCCGGCCATCCTTCACTGAAGTCGTGAGAATGCTCGAGCATGCAGAGATAGAAATCATGACGACTGTTCGCAAGGCCCGGTTCAGGTGTTGCATTACCCAGCCAATGACAGCGGACTGA

Protein Analysis

417

Amino Acids

46.69

Weight (kDa)

6.37

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 137 - 389 3e-67 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 143 - 387 1.5e-55 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 989
Acc65I GGTACC 2 cut(s) 110, 458
AccB1I GGYRCC 4 cut(s) 14, 110, 458, 910
AccIII TCCGGA 2 cut(s) 502, 883
AciI CCGC 7 cut(s) 12, 241, 685, 901, 1022, 1057, 1244
AclWI GGATC 1 cut(s) 916
AcoI YGGCCR 2 cut(s) 162, 1136
AcsI RAATTY 1 cut(s) 20
AcuI CTGAAG 2 cut(s) 1149, 1170
AcyI GRCGYC 1 cut(s) 911
AdeI CACNNNGTG 1 cut(s) 434
AfaI GTAC 4 cut(s) 112, 250, 460, 1026
AfiI CCNNNNNNNGG 4 cut(s) 520, 890, 907, 1215
AflII CTTAAG 1 cut(s) 397
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 7 cut(s) 195, 226, 548, 577, 709, 790, 860
AluBI AGCT 6 cut(s) 325, 335, 406, 422, 448, 963
AluI AGCT 6 cut(s) 325, 335, 406, 422, 448, 963
Alw26I GTCTC 1 cut(s) 881
AlwI GGATC 1 cut(s) 916
Ama87I CYCGRG 1 cut(s) 1166
Aor13HI TCCGGA 2 cut(s) 502, 883
AoxI GGCC 3 cut(s) 162, 1136, 1206
ApeKI GCWGC 4 cut(s) 183, 238, 538, 1031
ApoI RAATTY 1 cut(s) 20
Asp718I GGTACC 2 cut(s) 110, 458
AspLEI GCGC 1 cut(s) 913
AspS9I GGNCC 1 cut(s) 1207
AsuC2I CCSGG 1 cut(s) 1210
AsuHPI GGTGA 4 cut(s) 116, 428, 482, 541
AvaI CYCGRG 1 cut(s) 1166
BalI TGGCCA 1 cut(s) 164
BanI GGYRCC 4 cut(s) 14, 110, 458, 910
BanII GRGCYC 1 cut(s) 768
BbvI GCAGC 4 cut(s) 195, 225, 550, 1043
BccI CCATC 5 cut(s) 131, 143, 526, 901, 1147
BceAI ACGGC 1 cut(s) 597
BclI TGATCA 1 cut(s) 319
BcnI CCSGG 1 cut(s) 1210
BcoDI GTCTC 1 cut(s) 881
BfmI CTRYAG 1 cut(s) 171
BfoI RGCGCY 1 cut(s) 914
BfrI CTTAAG 1 cut(s) 397
BisI GCNGC 6 cut(s) 184, 239, 242, 539, 686, 1032
BlsI GCNGC 6 cut(s) 185, 240, 243, 540, 687, 1033
Bme1390I CCNGG 1 cut(s) 1210
BmeT110I CYCGRG 1 cut(s) 1166
BmgT120I GGNCC 1 cut(s) 1207
BmiI GGNNCC 4 cut(s) 16, 112, 460, 912
BmrFI CCNGG 1 cut(s) 1210
BmrI ACTGGG 1 cut(s) 900
BmsI GCATC 4 cut(s) 552, 589, 987, 1108
BmuI ACTGGG 1 cut(s) 900
Bpu10I CCTNAGC 2 cut(s) 525, 651
BpuEI CTTGAG 2 cut(s) 315, 389
BpuMI CCSGG 1 cut(s) 1210
BsaBI GATNNNNATC 1 cut(s) 1184
BsaHI GRCGYC 1 cut(s) 911
BsaJI CCNNGG 2 cut(s) 232, 289
BsaWI WCCGGW 2 cut(s) 502, 883
BsaXI ACNNNNNCTCC 4 cut(s) 144, 174, 527, 557
Bsc4I CCNNNNNNNGG 4 cut(s) 520, 890, 907, 1215
Bse1I ACTGG 2 cut(s) 31, 895
Bse3DI GCAATG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 1184
BseAI TCCGGA 2 cut(s) 502, 883
BseDI CCNNGG 2 cut(s) 232, 289
BseGI GGATG 5 cut(s) 580, 912, 1002, 1123, 1139
BseJI GATNNNNATC 1 cut(s) 1184
BseLI CCNNNNNNNGG 4 cut(s) 520, 890, 907, 1215
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 2 cut(s) 302, 539
BseNI ACTGG 2 cut(s) 31, 895
BseXI GCAGC 4 cut(s) 195, 225, 550, 1043
BseYI CCCAGC 1 cut(s) 1230
BsgI GTGCAG 1 cut(s) 884
BshFI GGCC 3 cut(s) 164, 1138, 1208
BshNI GGYRCC 4 cut(s) 14, 110, 458, 910
BsiHKCI CYCGRG 1 cut(s) 1166
BsiSI CCGG 5 cut(s) 503, 884, 914, 1135, 1210
BslFI GGGAC 2 cut(s) 797, 907
BslI CCNNNNNNNGG 4 cut(s) 520, 890, 907, 1215
BsmAI GTCTC 1 cut(s) 881
BsmFI GGGAC 2 cut(s) 797, 907
BsmI GAATGC 1 cut(s) 1167
BsnI GGCC 3 cut(s) 164, 1138, 1208
BsoBI CYCGRG 1 cut(s) 1166
Bsp1286I GDGCHC 1 cut(s) 768
Bsp13I TCCGGA 2 cut(s) 502, 883
Bsp143I GATC 3 cut(s) 319, 921, 1098
BspACI CCGC 7 cut(s) 12, 241, 685, 901, 1022, 1057, 1244
BspANI GGCC 3 cut(s) 164, 1138, 1208
BspCNI CTCAG 2 cut(s) 303, 538
BspEI TCCGGA 2 cut(s) 502, 883
BspHI TCATGA 2 cut(s) 1101, 1188
BspLI GGNNCC 4 cut(s) 16, 112, 460, 912
BspPI GGATC 1 cut(s) 916
BspT107I GGYRCC 4 cut(s) 14, 110, 458, 910
BspTI CTTAAG 1 cut(s) 397
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 2 cut(s) 31, 895
BssECI CCNNGG 2 cut(s) 232, 289
BssMI GATC 3 cut(s) 319, 921, 1098
BssNI GRCGYC 1 cut(s) 911
BssT1I CCWWGG 1 cut(s) 232
Bst4CI ACNGT 2 cut(s) 131, 1198
Bst6I CTCTTC 2 cut(s) 289, 375
BstACI GRCGYC 1 cut(s) 911
BstAFI CTTAAG 1 cut(s) 397
BstAPI GCANNNNNTGC 2 cut(s) 434, 1037
BstC8I GCNNGC 6 cut(s) 327, 567, 610, 726, 1082, 1173
BstDEI CTNAG 4 cut(s) 252, 311, 525, 651
BstF5I GGATG 5 cut(s) 580, 912, 1002, 1123, 1139
BstH2I RGCGCY 1 cut(s) 914
BstHHI GCGC 1 cut(s) 913
BstKTI GATC 3 cut(s) 322, 924, 1101
BstMAI GTCTC 1 cut(s) 881
BstMBI GATC 3 cut(s) 319, 921, 1098
BstMWI GCNNNNNNNGC 3 cut(s) 434, 1028, 1037
BstNSI RCATGY 3 cut(s) 121, 308, 1175
BstSCI CCNGG 1 cut(s) 1208
BstSFI CTRYAG 1 cut(s) 171
BstV1I GCAGC 4 cut(s) 195, 225, 550, 1043
BstXI CCANNNNNNTGG 1 cut(s) 627
BsuRI GGCC 3 cut(s) 164, 1138, 1208
BtsCI GGATG 5 cut(s) 580, 912, 1002, 1123, 1139
BtsIMutI CAGTG 2 cut(s) 24, 1146
Cac8I GCNNGC 6 cut(s) 327, 567, 610, 726, 1082, 1173
CciI TCATGA 2 cut(s) 1101, 1188
CfoI GCGC 1 cut(s) 913
Cfr13I GGNCC 1 cut(s) 1207
Csp6I GTAC 4 cut(s) 111, 249, 459, 1025
CviQI GTAC 4 cut(s) 111, 249, 459, 1025
DdeI CTNAG 4 cut(s) 252, 311, 525, 651
DinI GGCGCC 1 cut(s) 912
DpnI GATC 3 cut(s) 321, 923, 1100
DpnII GATC 3 cut(s) 319, 921, 1098
DraIII CACNNNGTG 1 cut(s) 434
EaeI YGGCCR 2 cut(s) 162, 1136
Eam1104I CTCTTC 2 cut(s) 289, 375
EarI CTCTTC 2 cut(s) 289, 375
EciI GGCGGA 1 cut(s) 1046
Eco130I CCWWGG 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 768
Eco57I CTGAAG 2 cut(s) 1149, 1170
Eco88I CYCGRG 1 cut(s) 1166
EcoT14I CCWWGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 768
EgeI GGCGCC 1 cut(s) 912
EheI GGCGCC 1 cut(s) 912
ErhI CCWWGG 1 cut(s) 232
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FaqI GGGAC 2 cut(s) 797, 907
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 6 cut(s) 184, 239, 242, 539, 686, 1032
FokI GGATG 5 cut(s) 567, 919, 1009, 1126, 1130
FriOI GRGCYC 1 cut(s) 768
Fsp4HI GCNGC 6 cut(s) 184, 239, 242, 539, 686, 1032
GlaI GCGC 1 cut(s) 912
GluI GCNGC 6 cut(s) 184, 239, 242, 539, 686, 1032
GsaI CCCAGC 1 cut(s) 1234
HaeII RGCGCY 1 cut(s) 914
HaeIII GGCC 3 cut(s) 164, 1138, 1208
HapII CCGG 5 cut(s) 503, 884, 914, 1135, 1210
HhaI GCGC 1 cut(s) 913
Hin1I GRCGYC 1 cut(s) 911
Hin6I GCGC 1 cut(s) 911
HinP1I GCGC 1 cut(s) 911
HincII GTYRAC 2 cut(s) 283, 952
HindII GTYRAC 2 cut(s) 283, 952
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 7 cut(s) 81, 206, 219, 297, 499, 775, 880
HpaI GTTAAC 1 cut(s) 283
HpaII CCGG 5 cut(s) 503, 884, 914, 1135, 1210
HphI GGTGA 4 cut(s) 116, 428, 482, 541
Hpy166II GTNNAC 4 cut(s) 283, 387, 617, 952
Hpy188I TCNGA 4 cut(s) 312, 774, 796, 817
Hpy188III TCNNGA 8 cut(s) 223, 503, 559, 884, 1009, 1102, 1156, 1189
Hpy8I GTNNAC 4 cut(s) 283, 387, 617, 952
Hpy99I CGWCG 1 cut(s) 249
HpyAV CCTTC 3 cut(s) 356, 866, 1153
HpyCH4III ACNGT 2 cut(s) 131, 1198
HpyCH4IV ACGT 2 cut(s) 247, 954
HpyF10VI GCNNNNNNNGC 3 cut(s) 434, 1028, 1037
HpyF3I CTNAG 4 cut(s) 252, 311, 525, 651
HpySE526I ACGT 2 cut(s) 247, 954
Hsp92I GRCGYC 1 cut(s) 911
HspAI GCGC 1 cut(s) 911
KasI GGCGCC 1 cut(s) 910
Kpn2I TCCGGA 2 cut(s) 502, 883
KpnI GGTACC 2 cut(s) 114, 462
Ksp22I TGATCA 1 cut(s) 319
KspAI GTTAAC 1 cut(s) 283
Kzo9I GATC 3 cut(s) 319, 921, 1098
LmnI GCTCC 1 cut(s) 535
Lsp1109I GCAGC 4 cut(s) 195, 225, 550, 1043
LweI GCATC 4 cut(s) 552, 589, 987, 1108
MaeII ACGT 2 cut(s) 247, 954
MaeIII GTNAC 2 cut(s) 298, 637
MalI GATC 3 cut(s) 321, 923, 1100
MboI GATC 3 cut(s) 319, 921, 1098
MboII GAAGA 4 cut(s) 306, 392, 485, 804
MfeI CAATTG 1 cut(s) 390
MhlI GDGCHC 1 cut(s) 768
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 7 cut(s) 20, 30, 373, 390, 571, 710, 831
MluNI TGGCCA 1 cut(s) 164
Mly113I GGCGCC 1 cut(s) 911
MlyI GAGTC 3 cut(s) 306, 508, 874
MnlI CCTC 7 cut(s) 94, 98, 100, 146, 284, 364, 449
Mox20I TGGCCA 1 cut(s) 164
MroI TCCGGA 2 cut(s) 502, 883
MscI TGGCCA 1 cut(s) 164
MseI TTAA 2 cut(s) 282, 398
MslI CAYNNNNRTG 1 cut(s) 102
Msp20I TGGCCA 1 cut(s) 164
MspA1I CMGCKG 3 cut(s) 903, 1022, 1244
MspCI CTTAAG 1 cut(s) 397
MspI CCGG 5 cut(s) 503, 884, 914, 1135, 1210
MspR9I CCNGG 1 cut(s) 1210
MunI CAATTG 1 cut(s) 390
Mva1269I GAATGC 1 cut(s) 1167
MwoI GCNNNNNNNGC 3 cut(s) 434, 1028, 1037
NarI GGCGCC 1 cut(s) 911
NciI CCSGG 1 cut(s) 1210
NdeII GATC 3 cut(s) 319, 921, 1098
NlaIV GGNNCC 4 cut(s) 16, 112, 460, 912
NmuCI GTSAC 1 cut(s) 298
NspI RCATGY 3 cut(s) 121, 308, 1175
PaeI GCATGC 1 cut(s) 1175
PaeR7I CTCGAG 1 cut(s) 1166
PagI TCATGA 2 cut(s) 1101, 1188
PciI ACATGT 1 cut(s) 117
PctI GAATGC 1 cut(s) 1167
PfeI GAWTC 4 cut(s) 81, 206, 219, 775
PkrI GCNGC 6 cut(s) 185, 240, 243, 540, 687, 1033
PleI GAGTC 3 cut(s) 305, 507, 874
PluTI GGCGCC 1 cut(s) 914
PpsI GAGTC 3 cut(s) 305, 507, 874
PscI ACATGT 1 cut(s) 117
PsiI TTATAA 1 cut(s) 989
PspFI CCCAGC 1 cut(s) 1230
PspN4I GGNNCC 4 cut(s) 16, 112, 460, 912
PspPI GGNCC 1 cut(s) 1207
PspXI VCTCGAGB 1 cut(s) 1166
RsaI GTAC 4 cut(s) 112, 250, 460, 1026
RsaNI GTAC 4 cut(s) 111, 249, 459, 1025
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 2 cut(s) 282, 398
SatI GCNGC 6 cut(s) 184, 239, 242, 539, 686, 1032
Sau3AI GATC 3 cut(s) 319, 921, 1098
Sau96I GGNCC 1 cut(s) 1207
SchI GAGTC 3 cut(s) 306, 508, 874
ScrFI CCNGG 1 cut(s) 1210
SduI GDGCHC 1 cut(s) 768
SfaNI GCATC 4 cut(s) 552, 589, 987, 1108
SfcI CTRYAG 1 cut(s) 171
SfoI GGCGCC 1 cut(s) 912
Sfr274I CTCGAG 1 cut(s) 1166
SlaI CTCGAG 1 cut(s) 1166
SmiMI CAYNNNNRTG 1 cut(s) 102
SmlI CTYRAG 4 cut(s) 330, 368, 397, 1166
SmoI CTYRAG 4 cut(s) 330, 368, 397, 1166
SphI GCATGC 1 cut(s) 1175
Sse9I AATT 7 cut(s) 20, 30, 373, 390, 571, 710, 831
SsiI CCGC 7 cut(s) 12, 241, 685, 901, 1022, 1057, 1244
SspDI GGCGCC 1 cut(s) 910
StyD4I CCNGG 1 cut(s) 1208
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 2 cut(s) 131, 1198
TaiI ACGT 2 cut(s) 250, 957
TaqI TCGA 4 cut(s) 126, 217, 356, 1167
TaqII GACCGA 1 cut(s) 758
TasI AATT 7 cut(s) 20, 30, 373, 390, 571, 710, 831
TauI GCSGC 2 cut(s) 244, 688
TfiI GAWTC 4 cut(s) 81, 206, 219, 775
Tru1I TTAA 2 cut(s) 282, 398
Tru9I TTAA 2 cut(s) 282, 398
TscAI CASTG 2 cut(s) 31, 1153
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 4 cut(s) 183, 238, 538, 1031
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 4 cut(s) 393, 589, 749, 767
TspGWI ACGGA 2 cut(s) 256, 884
TspRI CASTG 2 cut(s) 31, 1153
Vha464I CTTAAG 1 cut(s) 397
XapI RAATTY 1 cut(s) 20
XceI RCATGY 3 cut(s) 121, 308, 1175
XhoI CTCGAG 1 cut(s) 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.