Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002019

Physical Location & Seq

Genomic Coordinates Forward (+)

65029285 .. 65032833

Gene Structure 3549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010273

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGTTGGAAGGTGGTGCCAAGTTCACTGGAATCATAGGCCTAAACAACAACGATAACAACTACTATGATTTGTCTCAAGTCTTTTACCACAAACTCCATGCGGGTGAGGGTGAGGGTACTAACATGTCCATTGACAGTATGCAAACTAGCGTTGATGGAGGCTCTGTCGCCATGTCTATAGATAACAGCAGCGTTGCTTCTAATACTAATGATTCCCACACACGCATCTTGAACCACCAAGGCCTGCGCCGTCGCACAAATGACAACTACTCTGTTGCACAAAGTGTTAATCGCGGAAGAGTCACCCATGCACTCAGTGATGATCAGCTTGCCTGTGCTCTAATGGACAGCAATTCCGTCACAGAGGGGCTTGAGAATTATGAGGCGTGGACAATTGACTTACGAAAGCTAAACATGGGTGACGCTTTTGCACAAGGTGCTTTTGGGAAGCTTTACAGAGGTACTTACAACGGAGAGGATGTTGCTATCAAAATTTTGGAGAGGCCTGAGAATGACCCAGAAAAGGCTCAGATAATGGAGCAACAGTTCCAACAGGAAGTCAAGATGTTGGCTACGTTGAAGCATCCAAACATAGTTCGTTTTATTGGTGGCTGCCGTAAACCAATGGTTTGGTGTATTGTAACAGAGTATGCTAAGGGTGGTTCAGTACGGCAATTCTTGATGAGGCGGCAGAGCCGATCAGTTCCGTTGAAGTTAGCAGTCAAGCAAGCTTTGGATGTTGCAAGGGGGATGGCATATGTTCATGGGCTCGGCCTGATTCACAGGGACTTGAAATCTGACAACCTTTTGATTTTTTCAGACAAATCAATTAAAATTGCTGATTTTGGGGTTGCCCGTATTGAGGTGCAGACGGAAGGAATGACACCAGAGACAGGGACATACCGCTGGATGGCTCCGGAGATGATCCAGCATCGGCCGTACACTCAGAAAGTTGATGTTTACAGCTTTGGGATTGTTCTTTGGGAACTTATTACAGGGATGCTTCCGTTCTCGAAAATGACAGCAGTGCAGGCAGCGTTTGCAGTTGTCAATAAGGGTGTCCGTCCTATCATTCCTGCTGACTGCTTAACTGTTCTTGGTGAGATAATGACGAGATGCTGGGATCCCAACCCTGATGCCAGGCCACCCTTCACTGAGGTGGTAAGAATGCTCGAGAGTGCAGAGACAGAGATCATGACAACCGTTCGGAAGGCTCGTTTCAGGTGTTGCATGACCCAACCAATGACAGCCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

419

Amino Acids

46.72

Weight (kDa)

6.77

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	138 - 391	8.2e-65	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	145 - 389	9.6e-53	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24360 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170 AT4G31170
fragaria_vesca	FvH4_4g00150 FvH4_4g00150 FvH4_4g00150 FvH4_4g00150
malus_domestica	MD00G1091600.v1.1 MD04G1001200.v1.1 MD04G1001300.v1.1 MD13G1286000.v1.1
prunus_persica	Prupe.1G001200_v2.0.a1 Prupe.1G001300_v2.0.a1
pyrus_communis	pycom04g00180 pycom04g00190 pycom420g00210
rosa_chinensis	RchiOBHm_Chr3g0494021 RchiOBHm_Chr4g0384771
rosa_laevigata	RLG00000010273 RLG00000022687
rosa_multiflora	Rmu_sc0001322.1_g000022 Rmu_sc0003412.1_g000004
rosa_roxburghii	Rroxscaffold_5G00332830 Rroxscaffold_6G00391360
rosa_rugosa	Rorug03G0263700 Rorug03G0297500 Rorug03G0297500
rosa_samantha	Rh3AG313300 Rh3BG349400 Rh3CG346200 Rh3DG348700 Rh4AG001100 Rh4BG001000 Rh4CG000900 Rh4DG001000
rosa_wichuraiana	Rw3G027420 Rw4G000780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	14
AccII	CGCG	1 cut(s)	294
AccIII	TCCGGA	1 cut(s)	916
AciI	CCGC	4 cut(s)	101, 294, 688, 904
AclWI	GGATC	3 cut(s)	919, 1118, 1131
AcoI	YGGCCR	1 cut(s)	935
AcsI	RAATTY	1 cut(s)	492
AdeI	CACNNNGTG	3 cut(s)	284, 317, 437
AfaI	GTAC	4 cut(s)	118, 463, 669, 941
AfiI	CCNNNNNNNGG	4 cut(s)	523, 862, 893, 910
AflIII	ACRYGT	1 cut(s)	123
AgsI	TTSAA	4 cut(s)	232, 580, 712, 793
AjnI	CCWGG	1 cut(s)	1139
AleI	CACNNNNGTG	1 cut(s)	1157
AloI	GAACNNNNNNTCC	2 cut(s)	530, 562
AluBI	AGCT	5 cut(s)	328, 409, 451, 731, 966
AluI	AGCT	5 cut(s)	328, 409, 451, 731, 966
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	3 cut(s)	78, 884, 1178
AlwI	GGATC	3 cut(s)	919, 1118, 1131
Ama87I	CYCGRG	1 cut(s)	1172
Aor13HI	TCCGGA	1 cut(s)	916
AoxI	GGCC	6 cut(s)	37, 241, 503, 772, 935, 1142
ApeKI	GCWGC	3 cut(s)	189, 612, 1034
ApoI	RAATTY	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	249
AsuHPI	GGTGA	5 cut(s)	116, 122, 295, 431, 1112
AvaI	CYCGRG	1 cut(s)	1172
BamHI	GGATCC	1 cut(s)	1123
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	771
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	3 cut(s)	201, 599, 1046
BccI	CCATC	3 cut(s)	149, 745, 904
BceAI	ACGGC	4 cut(s)	234, 600, 686, 922
BciT130I	CCWGG	1 cut(s)	1141
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	3 cut(s)	78, 884, 1178
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	177
BisI	GCNGC	4 cut(s)	190, 613, 689, 1035
BlsI	GCNGC	4 cut(s)	191, 614, 690, 1036
Bme1390I	CCNGG	1 cut(s)	1141
BmeT110I	CYCGRG	1 cut(s)	1172
BmiI	GGNNCC	3 cut(s)	16, 915, 1125
BmrFI	CCNGG	1 cut(s)	1141
BmsI	GCATC	6 cut(s)	234, 592, 940, 990, 1106, 1126
Bpu10I	CCTNAGC	1 cut(s)	654
BpuEI	CTTGAG	2 cut(s)	60, 392
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	916
BsaXI	ACNNNNNCTCC	6 cut(s)	150, 180, 465, 495, 530, 560
Bsc4I	CCNNNNNNNGG	4 cut(s)	523, 862, 893, 910
Bse1I	ACTGG	1 cut(s)	31
BseAI	TCCGGA	1 cut(s)	916
BseBI	CCWGG	1 cut(s)	1141
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	6 cut(s)	484, 583, 742, 756, 915, 1005
BseLI	CCNNNNNNNGG	4 cut(s)	523, 862, 893, 910
BseMII	CTCAG	5 cut(s)	328, 498, 542, 959, 1146
BseNI	ACTGG	1 cut(s)	31
BseX3I	CGGCCG	1 cut(s)	935
BseXI	GCAGC	3 cut(s)	201, 599, 1046
BseYI	CCCAGC	1 cut(s)	1119
BsgI	GTGCAG	3 cut(s)	887, 1049, 1200
Bsh1236I	CGCG	1 cut(s)	294
Bsh1285I	CGRYCG	1 cut(s)	938
BshFI	GGCC	6 cut(s)	39, 243, 505, 774, 937, 1144
BshNI	GGYRCC	1 cut(s)	14
BsiEI	CGRYCG	1 cut(s)	938
BsiHKAI	GWGCWC	1 cut(s)	340
BsiHKCI	CYCGRG	1 cut(s)	1172
BsiSI	CCGG	1 cut(s)	917
BslFI	GGGAC	2 cut(s)	800, 910
BslI	CCNNNNNNNGG	4 cut(s)	523, 862, 893, 910
BsmAI	GTCTC	3 cut(s)	78, 884, 1178
BsmFI	GGGAC	2 cut(s)	800, 910
BsmI	GAATGC	1 cut(s)	1173
BsnI	GGCC	6 cut(s)	39, 243, 505, 774, 937, 1144
BsoBI	CYCGRG	1 cut(s)	1172
Bsp1286I	GDGCHC	2 cut(s)	340, 771
Bsp13I	TCCGGA	1 cut(s)	916
Bsp143I	GATC	5 cut(s)	322, 698, 924, 1123, 1191
BspACI	CCGC	4 cut(s)	101, 294, 688, 904
BspANI	GGCC	6 cut(s)	39, 243, 505, 774, 937, 1144
BspCNI	CTCAG	5 cut(s)	327, 499, 541, 958, 1147
BspEI	TCCGGA	1 cut(s)	916
BspFNI	CGCG	1 cut(s)	294
BspHI	TCATGA	1 cut(s)	1194
BspLI	GGNNCC	3 cut(s)	16, 915, 1125
BspPI	GGATC	3 cut(s)	919, 1118, 1131
BspT107I	GGYRCC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	5 cut(s)	322, 698, 924, 1123, 1191
BssT1I	CCWWGG	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	1141
Bst4CI	ACNGT	4 cut(s)	137, 546, 1093, 1204
Bst6I	CTCTTC	1 cut(s)	292
BstAPI	GCANNNNNTGC	2 cut(s)	437, 1040
BstC8I	GCNNGC	4 cut(s)	245, 330, 729, 1032
BstDEI	CTNAG	6 cut(s)	314, 507, 528, 654, 945, 1155
BstF5I	GGATG	6 cut(s)	484, 583, 742, 756, 915, 1005
BstFNI	CGCG	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	5 cut(s)	325, 701, 927, 1126, 1194
BstMAI	GTCTC	3 cut(s)	78, 884, 1178
BstMBI	GATC	5 cut(s)	322, 698, 924, 1123, 1191
BstMCI	CGRYCG	1 cut(s)	938
BstMWI	GCNNNNNNNGC	3 cut(s)	437, 1031, 1040
BstNI	CCWGG	1 cut(s)	1141
BstNSI	RCATGY	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	1139
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	3 cut(s)	201, 599, 1046
BstX2I	RGATCY	1 cut(s)	1123
BstXI	CCANNNNNNTGG	1 cut(s)	630
BstYI	RGATCY	1 cut(s)	1123
BstZI	CGGCCG	1 cut(s)	935
BsuRI	GGCC	6 cut(s)	39, 243, 505, 774, 937, 1144
BtsCI	GGATG	6 cut(s)	484, 583, 742, 756, 915, 1005
BtsI	GCAGTG	1 cut(s)	1032
BtsIMutI	CAGTG	4 cut(s)	24, 322, 1032, 1152
Cac8I	GCNNGC	4 cut(s)	245, 330, 729, 1032
CciI	TCATGA	1 cut(s)	1194
CfoI	GCGC	1 cut(s)	249
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	4 cut(s)	117, 462, 668, 940
CviAII	CATG	8 cut(s)	98, 124, 172, 308, 415, 764, 1195, 1231
CviQI	GTAC	4 cut(s)	117, 462, 668, 940
DdeI	CTNAG	6 cut(s)	314, 507, 528, 654, 945, 1155
DpnI	GATC	5 cut(s)	324, 700, 926, 1125, 1193
DpnII	GATC	5 cut(s)	322, 698, 924, 1123, 1191
DraIII	CACNNNGTG	3 cut(s)	284, 317, 437
EaeI	YGGCCR	1 cut(s)	935
EagI	CGGCCG	1 cut(s)	935
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
EclXI	CGGCCG	1 cut(s)	935
Eco130I	CCWWGG	1 cut(s)	238
Eco147I	AGGCCT	3 cut(s)	39, 243, 505
Eco24I	GRGCYC	1 cut(s)	771
Eco52I	CGGCCG	1 cut(s)	935
Eco88I	CYCGRG	1 cut(s)	1172
EcoRII	CCWGG	1 cut(s)	1139
EcoT14I	CCWWGG	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	771
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	8 cut(s)	101, 127, 175, 311, 418, 767, 1198, 1234
FaqI	GGGAC	2 cut(s)	800, 910
FatI	CATG	8 cut(s)	97, 123, 171, 307, 414, 763, 1194, 1230
FauI	CCCGC	1 cut(s)	94
FauNDI	CATATG	1 cut(s)	757
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	4 cut(s)	190, 613, 689, 1035
FokI	GGATG	6 cut(s)	491, 570, 749, 763, 922, 1012
FriOI	GRGCYC	1 cut(s)	771
Fsp4HI	GCNGC	4 cut(s)	190, 613, 689, 1035
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	4 cut(s)	190, 613, 689, 1035
GsaI	CCCAGC	1 cut(s)	1123
HaeIII	GGCC	6 cut(s)	39, 243, 505, 774, 937, 1144
HapII	CCGG	1 cut(s)	917
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	1 cut(s)	249
Hin1II	CATG	8 cut(s)	101, 127, 175, 311, 418, 767, 1198, 1234
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HindIII	AAGCTT	2 cut(s)	449, 729
HinfI	GANTC	4 cut(s)	30, 212, 300, 778
HpaII	CCGG	1 cut(s)	917
HphI	GGTGA	5 cut(s)	116, 122, 295, 431, 1112
Hpy166II	GTNNAC	5 cut(s)	24, 390, 620, 942, 961
Hpy188I	TCNGA	5 cut(s)	531, 799, 820, 948, 1209
Hpy188III	TCNNGA	7 cut(s)	229, 562, 679, 917, 1012, 1174, 1195
Hpy8I	GTNNAC	5 cut(s)	24, 390, 620, 942, 961
Hpy99I	CGWCG	1 cut(s)	255
HpyAV	CCTTC	3 cut(s)	869, 1159, 1204
HpyCH4III	ACNGT	4 cut(s)	137, 546, 1093, 1204
HpyCH4IV	ACGT	1 cut(s)	575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	437, 1031, 1040
HpyF3I	CTNAG	6 cut(s)	314, 507, 528, 654, 945, 1155
HpySE526I	ACGT	1 cut(s)	575
Hsp92II	CATG	8 cut(s)	101, 127, 175, 311, 418, 767, 1198, 1234
HspAI	GCGC	1 cut(s)	247
Kpn2I	TCCGGA	1 cut(s)	916
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	5 cut(s)	322, 698, 924, 1123, 1191
LmnI	GCTCC	2 cut(s)	538, 919
Lsp1109I	GCAGC	3 cut(s)	201, 599, 1046
LweI	GCATC	6 cut(s)	234, 592, 940, 990, 1106, 1126
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	4 cut(s)	301, 358, 419, 640
MalI	GATC	5 cut(s)	324, 700, 926, 1125, 1193
MboI	GATC	5 cut(s)	322, 698, 924, 1123, 1191
MboII	GAAGA	1 cut(s)	309
MfeI	CAATTG	1 cut(s)	393
MflI	RGATCY	1 cut(s)	1123
MhlI	GDGCHC	2 cut(s)	340, 771
MluCI	AATT	7 cut(s)	352, 376, 393, 492, 674, 828, 834
MlyI	GAGTC	1 cut(s)	309
MmeI	TCCRAC	1 cut(s)	574
MroI	TCCGGA	1 cut(s)	916
MseI	TTAA	3 cut(s)	288, 831, 1088
MslI	CAYNNNNRTG	2 cut(s)	102, 1157
MspA1I	CMGCKG	1 cut(s)	906
MspI	CCGG	1 cut(s)	917
MspR9I	CCNGG	1 cut(s)	1141
MunI	CAATTG	1 cut(s)	393
Mva1269I	GAATGC	1 cut(s)	1173
MvaI	CCWGG	1 cut(s)	1141
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	3 cut(s)	437, 1031, 1040
NdeI	CATATG	1 cut(s)	757
NdeII	GATC	5 cut(s)	322, 698, 924, 1123, 1191
NlaIII	CATG	8 cut(s)	101, 127, 175, 311, 418, 767, 1198, 1234
NlaIV	GGNNCC	3 cut(s)	16, 915, 1125
NmeAIII	GCCGAG	1 cut(s)	750
NmuCI	GTSAC	3 cut(s)	301, 358, 419
NspI	RCATGY	1 cut(s)	127
OliI	CACNNNNGTG	1 cut(s)	1157
PaeR7I	CTCGAG	1 cut(s)	1172
PagI	TCATGA	1 cut(s)	1194
PceI	AGGCCT	3 cut(s)	39, 243, 505
PciI	ACATGT	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	1213
PctI	GAATGC	1 cut(s)	1173
PfeI	GAWTC	3 cut(s)	30, 212, 778
PkrI	GCNGC	4 cut(s)	191, 614, 690, 1036
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
PscI	ACATGT	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	1139
PspFI	CCCAGC	1 cut(s)	1119
PspGI	CCWGG	1 cut(s)	1139
PspN4I	GGNNCC	3 cut(s)	16, 915, 1125
PsuI	RGATCY	1 cut(s)	1123
RsaI	GTAC	4 cut(s)	118, 463, 669, 941
RsaNI	GTAC	4 cut(s)	117, 462, 668, 940
RseI	CAYNNNNRTG	2 cut(s)	102, 1157
SaqAI	TTAA	3 cut(s)	288, 831, 1088
SatI	GCNGC	4 cut(s)	190, 613, 689, 1035
Sau3AI	GATC	5 cut(s)	322, 698, 924, 1123, 1191
SchI	GAGTC	1 cut(s)	309
ScrFI	CCNGG	1 cut(s)	1141
SduI	GDGCHC	2 cut(s)	340, 771
SfaNI	GCATC	6 cut(s)	234, 592, 940, 990, 1106, 1126
SfcI	CTRYAG	1 cut(s)	177
Sfr274I	CTCGAG	1 cut(s)	1172
SlaI	CTCGAG	1 cut(s)	1172
SmiMI	CAYNNNNRTG	2 cut(s)	102, 1157
SmlI	CTYRAG	3 cut(s)	75, 371, 1172
SmoI	CTYRAG	3 cut(s)	75, 371, 1172
Sse9I	AATT	7 cut(s)	352, 376, 393, 492, 674, 828, 834
SseBI	AGGCCT	3 cut(s)	39, 243, 505
SsiI	CCGC	4 cut(s)	101, 294, 688, 904
SspMI	CTAG	1 cut(s)	147
StuI	AGGCCT	3 cut(s)	39, 243, 505
StyD4I	CCNGG	1 cut(s)	1139
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	4 cut(s)	137, 546, 1093, 1204
TaiI	ACGT	1 cut(s)	578
TaqI	TCGA	2 cut(s)	1013, 1173
TasI	AATT	7 cut(s)	352, 376, 393, 492, 674, 828, 834
TauI	GCSGC	1 cut(s)	691
TfiI	GAWTC	3 cut(s)	30, 212, 778
Tru1I	TTAA	3 cut(s)	288, 831, 1088
Tru9I	TTAA	3 cut(s)	288, 831, 1088
TscAI	CASTG	4 cut(s)	31, 322, 1032, 1159
TseFI	GTSAC	3 cut(s)	301, 358, 419
TseI	GCWGC	3 cut(s)	189, 612, 1034
Tsp45I	GTSAC	3 cut(s)	301, 358, 419
TspDTI	ATGAA	1 cut(s)	752
TspGWI	ACGGA	6 cut(s)	346, 486, 696, 887, 996, 1052
TspRI	CASTG	4 cut(s)	31, 322, 1032, 1159
XapI	RAATTY	1 cut(s)	492
XceI	RCATGY	1 cut(s)	127
XhoI	CTCGAG	1 cut(s)	1172
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.