MD00G1103000.v1.1

transmembrane receptor protein serine/threonine kinase activity

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
21758756 .. 21759871
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1103000.v1.1.491

Sequence Viewer

Length: 501 bp
ATGAGGTGTGGCATTGTCAAATTGTCAATTTTAAAAGATGGGGGAGTTCTATATCTCCATGAAGATTCAAGGCTTAGAGTTATACATCGTGATTTGAAAGCTAGCAATATTCTTTTAGATGATGATATGAATCTAATAATATCAGATTTTGGAATGGCAAAAGTGTTTGGAGTTGATGATCAAACTCACAGAAACACAAGCAGAATTTATACTACGAAGGGATTGTATTCCACACAATCCGATATCTTTCGCTTTGGGGTACTCTTGCTTGAGATCCTAACAGGGAGAAGGAACTTTTTGGGCTTTCATGTCACAAATTGTGCACCAACTCTTGTAGGATATGCTTGGGAATTATGGAACGAAGGGAAAGGGTTGGAGTTGATGGATCCATTATTGAAAGACTCATGTAATACCAATGAGTTCTTGAGATGCATCCATGTCAGATTATTGTGTGTTCAAGAGGATGCAAACAAAAGACAACCATGTCGTCGGTTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

167

Amino Acids

19.09

Weight (kDa)

8.24

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 15 - 100 5.9e-15 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 15 - 103 4.4e-14 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024230)

Species Orthologous Gene IDs
malus_domestica MD00G1103000.v1.1 MD10G1313000.v1.1
rosa_rugosa Rorug06G0063900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 483
AclWI GGATC 3 cut(s) 268, 380, 393
AcsI RAATTY 1 cut(s) 204
AfaI GTAC 1 cut(s) 261
AgsI TTSAA 4 cut(s) 69, 97, 397, 458
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw21I GWGCWC 1 cut(s) 325
Alw44I GTGCAC 1 cut(s) 321
AlwI GGATC 3 cut(s) 268, 380, 393
ApaLI GTGCAC 1 cut(s) 321
ApoI RAATTY 1 cut(s) 204
AsuNHI GCTAGC 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 325
BamHI GGATCC 1 cut(s) 385
Bbv12I GWGCWC 1 cut(s) 325
BccI CCATC 2 cut(s) 32, 376
BclI TGATCA 1 cut(s) 178
BfaI CTAG 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 387
BmsI GCATC 3 cut(s) 419, 441, 454
BmtI GCTAGC 1 cut(s) 105
BpuEI CTTGAG 2 cut(s) 290, 445
BsaBI GATNNNNATC 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 129
BseGI GGATG 2 cut(s) 432, 469
BseJI GATNNNNATC 1 cut(s) 129
BseSI GKGCMC 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 3 cut(s) 178, 273, 385
BspLI GGNNCC 1 cut(s) 387
BspOI GCTAGC 1 cut(s) 105
BspPI GGATC 3 cut(s) 268, 380, 393
BssMI GATC 3 cut(s) 178, 273, 385
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 74
BstF5I GGATG 2 cut(s) 432, 469
BstKTI GATC 3 cut(s) 181, 276, 388
BstMBI GATC 3 cut(s) 178, 273, 385
BstSLI GKGCMC 1 cut(s) 325
BstX2I RGATCY 2 cut(s) 273, 385
BstYI RGATCY 2 cut(s) 273, 385
BtsCI GGATG 2 cut(s) 432, 469
Cac8I GCNNGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 260
CviAII CATG 5 cut(s) 59, 308, 405, 437, 483
CviJI RGCY 3 cut(s) 73, 101, 303
CviKI_1 RGCY 3 cut(s) 73, 101, 303
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 1 cut(s) 74
DpnI GATC 3 cut(s) 180, 275, 387
DpnII GATC 3 cut(s) 178, 273, 385
DraI TTTAAA 1 cut(s) 33
DrdI GACNNNNNNGTC 1 cut(s) 483
DseDI GACNNNNNNGTC 1 cut(s) 483
Eco32I GATATC 1 cut(s) 244
EcoRV GATATC 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 434
FaeI CATG 5 cut(s) 62, 311, 408, 440, 486
FatI CATG 5 cut(s) 58, 307, 404, 436, 482
FbaI TGATCA 1 cut(s) 178
FokI GGATG 2 cut(s) 419, 476
FspBI CTAG 1 cut(s) 102
Hin1II CATG 5 cut(s) 62, 311, 408, 440, 486
HinfI GANTC 3 cut(s) 65, 130, 401
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 3 cut(s) 145, 241, 443
Hpy188III TCNNGA 3 cut(s) 89, 424, 458
Hpy8I GTNNAC 1 cut(s) 323
Hpy99I CGWCG 1 cut(s) 492
HpyAV CCTTC 3 cut(s) 211, 282, 356
HpyCH4V TGCA 3 cut(s) 323, 432, 467
HpyF3I CTNAG 1 cut(s) 74
Hsp92II CATG 5 cut(s) 62, 311, 408, 440, 486
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 3 cut(s) 178, 273, 385
LpnPI CCDG 1 cut(s) 267
LweI GCATC 3 cut(s) 419, 441, 454
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 310
MalI GATC 3 cut(s) 180, 275, 387
MboI GATC 3 cut(s) 178, 273, 385
MboII GAAGA 1 cut(s) 74
MflI RGATCY 2 cut(s) 273, 385
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 5 cut(s) 20, 27, 204, 316, 350
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 1 cut(s) 454
Mph1103I ATGCAT 1 cut(s) 434
MseI TTAA 1 cut(s) 32
NdeII GATC 3 cut(s) 178, 273, 385
NheI GCTAGC 1 cut(s) 101
NlaIII CATG 5 cut(s) 62, 311, 408, 440, 486
NlaIV GGNNCC 1 cut(s) 387
NmuCI GTSAC 1 cut(s) 310
NsiI ATGCAT 1 cut(s) 434
PfeI GAWTC 2 cut(s) 65, 130
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
PspN4I GGNNCC 1 cut(s) 387
PsuI RGATCY 2 cut(s) 273, 385
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 3 cut(s) 178, 273, 385
SchI GAGTC 1 cut(s) 395
SduI GDGCHC 1 cut(s) 325
SetI ASST 2 cut(s) 8, 103
SfaNI GCATC 3 cut(s) 419, 441, 454
SmlI CTYRAG 2 cut(s) 269, 424
SmoI CTYRAG 2 cut(s) 269, 424
Sse9I AATT 5 cut(s) 20, 27, 204, 316, 350
SspI AATATT 1 cut(s) 109
SspMI CTAG 1 cut(s) 102
TasI AATT 5 cut(s) 20, 27, 204, 316, 350
TfiI GAWTC 2 cut(s) 65, 130
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseFI GTSAC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 75, 143, 296
VneI GTGCAC 1 cut(s) 321
XapI RAATTY 1 cut(s) 204
XspI CTAG 1 cut(s) 102
Zsp2I ATGCAT 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.