Rorug06G0063900

Salt stress response/antifungal

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
8531297 .. 8533058
1762 bp
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UTR
Exon/CDS
Intron
Rorug06G0063900.1

Sequence Viewer

Length: 216 bp
ATGTTGGAGATGGACTACGATGGGGGTGGCGGCACACCAGGCAGTTTCCATTTCCACGTTCATATAAAACATCTGTATCGTGTACCAGAAGGTATGACAGCACCATTTCTTGCGGCGGGCCGGTTTCGACGAGTTTTTTTCATAGGTTGGCCGGTGTCAAAATTTGGAGGCATAATATGCAGTGCATGGACTTCTTGTATATCATCCTCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

71

Amino Acids

7.81

Weight (kDa)

8.8

Isoelectric Point (pI)

52.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024230)

Species Orthologous Gene IDs
malus_domestica MD00G1103000.v1.1 MD10G1313000.v1.1
rosa_rugosa Rorug06G0063900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 30, 113, 116
AcoI YGGCCR 1 cut(s) 149
AcsI RAATTY 1 cut(s) 161
AfaI GTAC 1 cut(s) 84
AjnI CCWGG 1 cut(s) 37
AoxI GGCC 2 cut(s) 118, 149
ApoI RAATTY 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 118
BaeI ACNNNNGTAYC 2 cut(s) 59, 92
BccI CCATC 2 cut(s) 4, 14
BciT130I CCWGG 1 cut(s) 39
BisI GCNGC 2 cut(s) 31, 114
BlsI GCNGC 2 cut(s) 32, 115
Bme1390I CCNGG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 39
Bse118I RCCGGY 2 cut(s) 120, 151
BseBI CCWGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 203
BshFI GGCC 2 cut(s) 120, 151
BsiSI CCGG 2 cut(s) 121, 152
BsnI GGCC 2 cut(s) 120, 151
BspACI CCGC 3 cut(s) 30, 113, 116
BspANI GGCC 2 cut(s) 120, 151
BspHI TCATGA 1 cut(s) 212
BsrFI RCCGGY 2 cut(s) 120, 151
BssAI RCCGGY 2 cut(s) 120, 151
Bst2UI CCWGG 1 cut(s) 39
BstAPI GCANNNNNTGC 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 118
BstF5I GGATG 1 cut(s) 203
BstMWI GCNNNNNNNGC 2 cut(s) 39, 177
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BsuRI GGCC 2 cut(s) 120, 151
BtsCI GGATG 1 cut(s) 203
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 118
CciI TCATGA 1 cut(s) 212
Cfr10I RCCGGY 2 cut(s) 120, 151
Cfr13I GGNCC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 83
CviAII CATG 2 cut(s) 186, 213
CviJI RGCY 2 cut(s) 120, 151
CviKI_1 RGCY 2 cut(s) 120, 151
CviQI GTAC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 2 cut(s) 189, 216
FaiI YATR 9 cut(s) 63, 65, 95, 143, 173, 178, 187, 200, 214
FatI CATG 2 cut(s) 185, 212
FauI CCCGC 1 cut(s) 109
Fnu4HI GCNGC 2 cut(s) 31, 114
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 2 cut(s) 31, 114
GluI GCNGC 2 cut(s) 31, 114
HaeIII GGCC 2 cut(s) 120, 151
HapII CCGG 2 cut(s) 121, 152
Hin1II CATG 2 cut(s) 189, 216
HpaII CCGG 2 cut(s) 121, 152
Hpy166II GTNNAC 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 213
Hpy8I GTNNAC 1 cut(s) 83
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 2 cut(s) 180, 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 177
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 2 cut(s) 189, 216
LpnPI CCDG 5 cut(s) 24, 51, 99, 134, 165
MaeII ACGT 1 cut(s) 57
MluCI AATT 1 cut(s) 161
MnlI CCTC 1 cut(s) 161
MspI CCGG 2 cut(s) 121, 152
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 39, 177
NlaIII CATG 2 cut(s) 189, 216
PagI TCATGA 1 cut(s) 212
PkrI GCNGC 2 cut(s) 32, 115
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspPI GGNCC 1 cut(s) 118
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SatI GCNGC 2 cut(s) 31, 114
Sau96I GGNCC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 39
SetI ASST 3 cut(s) 60, 94, 148
Sse9I AATT 1 cut(s) 161
SsiI CCGC 3 cut(s) 30, 113, 116
StyD4I CCNGG 1 cut(s) 37
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 127
TasI AATT 1 cut(s) 161
TauI GCSGC 2 cut(s) 33, 116
TscAI CASTG 1 cut(s) 187
TspDTI ATGAA 2 cut(s) 50, 130
TspRI CASTG 1 cut(s) 187
XapI RAATTY 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.