Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0022384

Physical Location & Seq

Genomic Coordinates Forward (+)

16205372 .. 16206117

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1057200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGACACTAATTTGTTATTACCTTCCCAATAGTTACGTTCCACTGCAGCTCTCGTTCCAAATGTGGACTGACCAAATGCAGGAATCATTAGAATCAAAGAAAAAGGGGGATCCTGCTTTTAAGCACAAGGACTTCAGAACCGCAATTGAGTGTTATTCACAGGTTAGGTTCTTATTAGGATACTTGTGGGAAATTCTGAGTAGAGCTTTGATAATAGTTACTTTCATGTCCAGACCAATATCCGAATTTGGCCTTCAATGGGATGTTCGTTATCTGACCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

95

Amino Acids

11.23

Weight (kDa)

7.69

Isoelectric Point (pI)

54.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	11 - 55	1.8e-18	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0022384)

Species	Orthologous Gene IDs
malus_domestica	MD01G1057200.v1.1
pyrus_communis	pycom01g08370 pycom01g08510 pycom01g08620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	2 cut(s)	104, 117
AcsI	RAATTY	2 cut(s)	192, 245
AcuI	CTGAAG	1 cut(s)	118
AfiI	CCNNNNNNNGG	2 cut(s)	79, 259
AgsI	TTSAA	1 cut(s)	257
AluBI	AGCT	2 cut(s)	49, 206
AluI	AGCT	2 cut(s)	49, 206
AlwI	GGATC	2 cut(s)	104, 117
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	2 cut(s)	192, 245
BamHI	GGATCC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	58
BciVI	GTATCC	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	173
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 259
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	2 cut(s)	79, 259
BseMII	CTCAG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	79, 259
BsnI	GGCC	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	48
BspPI	GGATC	2 cut(s)	104, 117
BssMI	GATC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	268
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	41
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	3 cut(s)	49, 206, 252
CviKI_1	RGCY	3 cut(s)	49, 206, 252
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	118
FaeI	CATG	1 cut(s)	229
FaiI	YATR	1 cut(s)	227
FatI	CATG	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	47
GluI	GCNGC	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	229
HinfI	GANTC	2 cut(s)	83, 92
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	4 cut(s)	137, 198, 244, 276
Hpy188III	TCNNGA	1 cut(s)	231
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	2 cut(s)	32, 263
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	46, 79
HpyF3I	CTNAG	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	109
LpnPI	CCDG	4 cut(s)	65, 126, 146, 244
Lsp1109I	GCAGC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	32, 217
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	1 cut(s)	109
MluCI	AATT	4 cut(s)	9, 144, 192, 245
MseI	TTAA	2 cut(s)	120, 283
MunI	CAATTG	1 cut(s)	144
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	1 cut(s)	229
NlaIV	GGNNCC	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	83, 92
PkrI	GCNGC	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	109
SaqAI	TTAA	2 cut(s)	120, 283
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	1 cut(s)	109
SetI	ASST	7 cut(s)	24, 39, 51, 165, 170, 208, 281
SfcI	CTRYAG	1 cut(s)	44
SgeI	CNNG	8 cut(s)	64, 92, 125, 139, 173, 196, 238, 243
Sse9I	AATT	4 cut(s)	9, 144, 192, 245
SsiI	CCGC	1 cut(s)	141
TaiI	ACGT	1 cut(s)	39
TasI	AATT	4 cut(s)	9, 144, 192, 245
TfiI	GAWTC	2 cut(s)	83, 92
Tru1I	TTAA	2 cut(s)	120, 283
Tru9I	TTAA	2 cut(s)	120, 283
TscAI	CASTG	1 cut(s)	48
TseI	GCWGC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	48
XapI	RAATTY	2 cut(s)	192, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.