pycom01g08620

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
9587836 .. 9588538
703 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g08620.1

Sequence Viewer

Length: 186 bp
ATGACCAACGAAAAGAACAAAACTGAAAGAAAAAACAAAAAAGACTCTCGGCTGCTGTTCTTGACGGCTGGGCAGAGTTCTTCCCACTTGAAACTTCTGCTTATCGCTCATGTCGAAGAACCGATGAGTATGCCTTGTTCACCGTGGGTAATGGCTCCAGAAGGAGAATGTTGCTACCGACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

6.99

Weight (kDa)

8.55

Isoelectric Point (pI)

73.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022384)

Species Orthologous Gene IDs
malus_domestica MD01G1057200.v1.1
pyrus_communis pycom01g08370 pycom01g08510 pycom01g08620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 132
BbvI GCAGC 1 cut(s) 39
BceAI ACGGC 1 cut(s) 81
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 143
BseXI GCAGC 1 cut(s) 39
BseYI CCCAGC 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 144, 183
BstDSI CCRYGG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 143
CviAII CATG 1 cut(s) 110
CviJI RGCY 3 cut(s) 52, 68, 155
CviKI_1 RGCY 3 cut(s) 52, 68, 155
FaeI CATG 1 cut(s) 113
FaiI YATR 2 cut(s) 111, 131
FatI CATG 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 53
GsaI CCCAGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 141
Hin1II CATG 1 cut(s) 113
HinfI GANTC 1 cut(s) 44
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 140
Hpy188III TCNNGA 2 cut(s) 61, 158
Hpy8I GTNNAC 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 2 cut(s) 144, 183
Hsp92II CATG 1 cut(s) 113
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 2 cut(s) 54, 171
Lsp1109I GCAGC 1 cut(s) 39
MboII GAAGA 2 cut(s) 72, 128
MlyI GAGTC 1 cut(s) 38
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 1 cut(s) 156
NmeAIII GCCGAG 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
PspFI CCCAGC 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 156
PsrI GAACNNNNNNTAC 2 cut(s) 121, 153
SatI GCNGC 1 cut(s) 53
SchI GAGTC 1 cut(s) 38
SgeI CNNG 8 cut(s) 60, 73, 81, 100, 122, 147, 156, 170
TaaI ACNGT 2 cut(s) 144, 183
TaqI TCGA 1 cut(s) 114
TseI GCWGC 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.