Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0021174

Physical Location & Seq

Genomic Coordinates Forward (+)

21148149 .. 21149087

Gene Structure 939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1096800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCCTATCCTGGTAGTCGGAGAATATCGGATCGAGGATGTCAACGATCGTCAAAAACTTGACAGCAATGCGCTTTTTCATTTTTCGGATTGCGATATAAATATGCCGATGATCTTCATCCGTCGAATATTTGTGATCTCCGTATGCATGCTTAGCTTGGTCAGCTTGACCAGTGGCGGTGATCCTGATATTAACACTTTCCGTAGCTGCAACGCCACTACTCCCACCTATGACTGGGACAGTTCCGAATTCCCGTCCAATCTAAACAACCTCTTCTCCGCCCTCAACTCCAATGCCACCAACGAAACAGGCTACTACAACGCCACCTTTGGTAAGAAACTAACTGAAATGGCACACAGCTGCTTTCTCTGTCGTGGTGACGTTGAGGTAGACGTTTGCGCACAATGCGTGAATGCGGCAATCCTTATGGCAGTCTGGAGCTGCCCCACAAGTAAACGGGTTGTGTGGTGGTACGGCAAGAATTGTATGCTAAGGTACTCAGATGAGTCTTTCTTTTCTATTGTGCAATACTTGCCTGATTTCACCGACGGGCGGGTTTACATCCAGCCAGTACCGCAAGTTAATGCAACAATACCAGATGAACCAACCGGATTTAATCAGGTAATGGAGAGTATTTTGAATGATTTAGTCATCGAGGCTTCCAAGGCTTCTTCCAAGTTTGCAACCAAGGAAGCGCATGTTACAGGGTCGAATATTACGCTGTACAGCCTTGCGCAGTGCACGCATGACCTCTCCACTGCAGATTGCAATTCCTGTCTTAGGGTAGCCGTAGCACAAGTAGTTTCAACCAATAGAGGAATCAATGGAGGACTATTTATGTGTCCCAGTTGTAATGTCAGGTATGAAACTGTCCCCTTTTACGGGAAACCATGGGTTCATCACCTTCGTCGTCGTCATCGTCGTCCTCCTCCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

313

Amino Acids

34.98

Weight (kDa)

5.97

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	70 - 168	1.9e-18	Salt stress response/antifungal
Stress-antifung	PF01657	202 - 290	4.8e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021174)

Species	Orthologous Gene IDs
malus_domestica	MD01G1096800.v1.1 MD01G1098100.v1.1
pyrus_communis	pycom01g02380 pycom01g12210 pycom13g25000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	400, 735
AccI	GTMKAC	1 cut(s)	390
AciI	CCGC	5 cut(s)	177, 279, 416, 553, 575
AclWI	GGATC	2 cut(s)	38, 176
AcsI	RAATTY	1 cut(s)	248
AfaI	GTAC	4 cut(s)	473, 497, 573, 725
AfiI	CCNNNNNNNGG	5 cut(s)	234, 552, 780, 881, 882
AgsI	TTSAA	2 cut(s)	640, 807
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	5 cut(s)	156, 165, 207, 360, 441
AluI	AGCT	5 cut(s)	156, 165, 207, 360, 441
Alw21I	GWGCWC	1 cut(s)	743
Alw44I	GTGCAC	1 cut(s)	739
AlwI	GGATC	2 cut(s)	38, 176
ApaLI	GTGCAC	1 cut(s)	739
ApeKI	GCWGC	3 cut(s)	207, 360, 441
ApoI	RAATTY	1 cut(s)	248
AspLEI	GCGC	4 cut(s)	73, 401, 697, 736
AsuHPI	GGTGA	4 cut(s)	191, 389, 535, 893
BaeGI	GKGCMC	1 cut(s)	743
Bbv12I	GWGCWC	1 cut(s)	743
BbvI	GCAGC	3 cut(s)	194, 347, 428
BceAI	ACGGC	2 cut(s)	490, 773
BciT130I	CCWGG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	759
BisI	GCNGC	4 cut(s)	208, 361, 417, 442
BlpI	GCTNAGC	1 cut(s)	152
BlsI	GCNGC	4 cut(s)	209, 362, 418, 443
Bme1390I	CCNGG	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	11
BmrI	ACTGGG	2 cut(s)	244, 840
BmuI	ACTGGG	2 cut(s)	244, 840
BpmI	CTGGAG	1 cut(s)	457
Bpu10I	CCTNAGC	1 cut(s)	491
Bpu1102I	GCTNAGC	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	3 cut(s)	663, 687, 890
BsaWI	WCCGGW	1 cut(s)	608
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	5 cut(s)	234, 552, 780, 881, 882
Bse1I	ACTGG	4 cut(s)	171, 239, 569, 846
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	3 cut(s)	663, 687, 890
BseGI	GGATG	3 cut(s)	43, 117, 561
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	5 cut(s)	234, 552, 780, 881, 882
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	4 cut(s)	171, 239, 569, 846
BseRI	GAGGAG	2 cut(s)	918, 921
BseSI	GKGCMC	1 cut(s)	743
BseXI	GCAGC	3 cut(s)	194, 347, 428
Bsh1285I	CGRYCG	1 cut(s)	49
BsiEI	CGRYCG	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	743
BsiSI	CCGG	1 cut(s)	609
BslFI	GGGAC	3 cut(s)	251, 828, 857
BslI	CCNNNNNNNGG	5 cut(s)	234, 552, 780, 881, 882
BsmFI	GGGAC	3 cut(s)	251, 828, 857
BsmI	GAATGC	1 cut(s)	418
Bsp1286I	GDGCHC	1 cut(s)	743
Bsp1407I	TGTACA	1 cut(s)	723
Bsp143I	GATC	5 cut(s)	30, 46, 111, 135, 181
Bsp1720I	GCTNAGC	1 cut(s)	152
Bsp19I	CCATGG	1 cut(s)	890
BspACI	CCGC	5 cut(s)	177, 279, 416, 553, 575
BspCNI	CTCAG	1 cut(s)	512
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	2 cut(s)	38, 176
BsrDI	GCAATG	1 cut(s)	73
BsrGI	TGTACA	1 cut(s)	723
BsrI	ACTGG	4 cut(s)	171, 239, 569, 846
BssECI	CCNNGG	3 cut(s)	663, 687, 890
BssMI	GATC	5 cut(s)	30, 46, 111, 135, 181
BssT1I	CCWWGG	3 cut(s)	663, 687, 890
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	2 cut(s)	242, 871
Bst6I	CTCTTC	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	532
BstAUI	TGTACA	1 cut(s)	723
BstC8I	GCNNGC	2 cut(s)	149, 743
BstDEI	CTNAG	4 cut(s)	152, 491, 499, 779
BstDSI	CCRYGG	1 cut(s)	890
BstENI	CCTNNNNNAGG	1 cut(s)	778
BstF5I	GGATG	3 cut(s)	43, 117, 561
BstHHI	GCGC	4 cut(s)	73, 401, 697, 736
BstKTI	GATC	5 cut(s)	33, 49, 114, 138, 184
BstMBI	GATC	5 cut(s)	30, 46, 111, 135, 181
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	7 cut(s)	153, 162, 405, 532, 574, 665, 742
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	2 cut(s)	151, 701
BstSCI	CCNGG	1 cut(s)	9
BstSFI	CTRYAG	1 cut(s)	759
BstSLI	GKGCMC	1 cut(s)	743
BstV1I	GCAGC	3 cut(s)	194, 347, 428
BtgI	CCRYGG	1 cut(s)	890
BtsCI	GGATG	3 cut(s)	43, 117, 561
BtsI	GCAGTG	2 cut(s)	743, 756
BtsIMutI	CAGTG	3 cut(s)	178, 743, 756
Cac8I	GCNNGC	2 cut(s)	149, 743
CfoI	GCGC	4 cut(s)	73, 401, 697, 736
Csp6I	GTAC	4 cut(s)	472, 496, 572, 724
CviAII	CATG	4 cut(s)	148, 698, 746, 891
CviQI	GTAC	4 cut(s)	472, 496, 572, 724
DdeI	CTNAG	4 cut(s)	152, 491, 499, 779
DpnI	GATC	5 cut(s)	32, 48, 113, 137, 183
DpnII	GATC	5 cut(s)	30, 46, 111, 135, 181
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
EciI	GGCGGA	1 cut(s)	268
Eco130I	CCWWGG	3 cut(s)	663, 687, 890
EcoNI	CCTNNNNNAGG	1 cut(s)	778
EcoRI	GAATTC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	9
EcoT14I	CCWWGG	3 cut(s)	663, 687, 890
EcoT22I	ATGCAT	1 cut(s)	149
ErhI	CCWWGG	3 cut(s)	663, 687, 890
FaeI	CATG	4 cut(s)	151, 701, 749, 894
FaqI	GGGAC	3 cut(s)	251, 828, 857
FatI	CATG	4 cut(s)	147, 697, 745, 890
FauI	CCCGC	1 cut(s)	546
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	4 cut(s)	208, 361, 417, 442
FokI	GGATG	3 cut(s)	50, 104, 548
Fsp4HI	GCNGC	4 cut(s)	208, 361, 417, 442
FspI	TGCGCA	2 cut(s)	400, 735
GlaI	GCGC	4 cut(s)	72, 400, 696, 735
GluI	GCNGC	4 cut(s)	208, 361, 417, 442
GsuI	CTGGAG	1 cut(s)	457
HapII	CCGG	1 cut(s)	609
HhaI	GCGC	4 cut(s)	73, 401, 697, 736
Hin1II	CATG	4 cut(s)	151, 701, 749, 894
Hin6I	GCGC	4 cut(s)	71, 399, 695, 734
HinP1I	GCGC	4 cut(s)	71, 399, 695, 734
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	2 cut(s)	506, 819
HpaII	CCGG	1 cut(s)	609
HphI	GGTGA	4 cut(s)	191, 389, 535, 893
Hpy166II	GTNNAC	5 cut(s)	43, 391, 455, 559, 741
Hpy188I	TCNGA	5 cut(s)	20, 30, 88, 247, 502
Hpy188III	TCNNGA	2 cut(s)	185, 436
Hpy8I	GTNNAC	5 cut(s)	43, 391, 455, 559, 741
Hpy99I	CGWCG	5 cut(s)	126, 551, 912, 915, 924
HpyAV	CCTTC	1 cut(s)	914
HpyCH4III	ACNGT	2 cut(s)	242, 871
HpyCH4IV	ACGT	2 cut(s)	381, 393
HpyCH4V	TGCA	8 cut(s)	147, 210, 526, 587, 683, 741, 761, 768
HpyF10VI	GCNNNNNNNGC	7 cut(s)	153, 162, 405, 532, 574, 665, 742
HpyF3I	CTNAG	4 cut(s)	152, 491, 499, 779
HpySE526I	ACGT	2 cut(s)	381, 393
Hsp92II	CATG	4 cut(s)	151, 701, 749, 894
HspAI	GCGC	4 cut(s)	71, 399, 695, 734
Kzo9I	GATC	5 cut(s)	30, 46, 111, 135, 181
LmnI	GCTCC	1 cut(s)	438
Lsp1109I	GCAGC	3 cut(s)	194, 347, 428
MaeII	ACGT	2 cut(s)	381, 393
MaeIII	GTNAC	2 cut(s)	377, 700
MalI	GATC	5 cut(s)	32, 48, 113, 137, 183
MboI	GATC	5 cut(s)	30, 46, 111, 135, 181
MboII	GAAGA	3 cut(s)	106, 265, 663
MhlI	GDGCHC	1 cut(s)	743
MluCI	AATT	3 cut(s)	248, 481, 769
MlyI	GAGTC	1 cut(s)	515
Mph1103I	ATGCAT	1 cut(s)	149
MseI	TTAA	4 cut(s)	192, 582, 615, 937
MspA1I	CMGCKG	1 cut(s)	360
MspI	CCGG	1 cut(s)	609
MspR9I	CCNGG	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	7 cut(s)	153, 162, 405, 532, 574, 665, 742
NcoI	CCATGG	1 cut(s)	890
NdeII	GATC	5 cut(s)	30, 46, 111, 135, 181
NlaIII	CATG	4 cut(s)	151, 701, 749, 894
NmuCI	GTSAC	1 cut(s)	377
NsbI	TGCGCA	2 cut(s)	400, 735
NsiI	ATGCAT	1 cut(s)	149
NspI	RCATGY	2 cut(s)	151, 701
PaeI	GCATGC	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	2 cut(s)	916, 919
PctI	GAATGC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	819
PkrI	GCNGC	4 cut(s)	209, 362, 418, 443
Ple19I	CGATCG	1 cut(s)	49
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	763
PvuI	CGATCG	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	360
RsaI	GTAC	4 cut(s)	473, 497, 573, 725
RsaNI	GTAC	4 cut(s)	472, 496, 572, 724
SaqAI	TTAA	4 cut(s)	192, 582, 615, 937
SatI	GCNGC	4 cut(s)	208, 361, 417, 442
Sau3AI	GATC	5 cut(s)	30, 46, 111, 135, 181
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	743
SfcI	CTRYAG	1 cut(s)	759
SphI	GCATGC	1 cut(s)	151
Sse9I	AATT	3 cut(s)	248, 481, 769
SsiI	CCGC	5 cut(s)	177, 279, 416, 553, 575
SspI	AATATT	2 cut(s)	129, 715
StyD4I	CCNGG	1 cut(s)	9
StyI	CCWWGG	3 cut(s)	663, 687, 890
TaaI	ACNGT	2 cut(s)	242, 871
TaiI	ACGT	2 cut(s)	384, 396
TaqI	TCGA	4 cut(s)	33, 124, 654, 710
TasI	AATT	3 cut(s)	248, 481, 769
TatI	WGTACW	1 cut(s)	723
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	1 cut(s)	819
Tru1I	TTAA	4 cut(s)	192, 582, 615, 937
Tru9I	TTAA	4 cut(s)	192, 582, 615, 937
TscAI	CASTG	3 cut(s)	178, 743, 763
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	3 cut(s)	207, 360, 441
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	5 cut(s)	68, 106, 615, 879, 887
TspGWI	ACGGA	3 cut(s)	110, 130, 191
TspRI	CASTG	3 cut(s)	178, 743, 763
VneI	GTGCAC	1 cut(s)	739
XagI	CCTNNNNNAGG	1 cut(s)	778
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	2 cut(s)	151, 701
XmiI	GTMKAC	1 cut(s)	390
Zsp2I	ATGCAT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.